r-bioc-genomicfeatures (1.50.4+dfsg-1)

Details

Core information at a glance

Distribution
debian
Origin
debian-bookworm
Repository
https://deb.debian.org/debian
Codename
bookworm
Component
main
Source
none
Architecture
amd64
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
4.6 kB
Size expected
1.7 MB
Size actual
1.7 MB
Size match

Dependencies

Required package dependencies

  • r-base-core (>= 4.2.2.20221110-2)
  • r-api-4.0
  • r-api-bioc-3.16
  • r-bioc-biocgenerics (>= 0.1.0)
  • r-bioc-s4vectors (>= 0.17.29)
  • r-bioc-iranges (>= 2.13.23)
  • r-bioc-genomeinfodb (>= 1.34.7)
  • r-bioc-genomicranges (>= 1.31.17)
  • r-bioc-annotationdbi (>= 1.41.4)
  • r-cran-dbi
  • r-cran-rsqlite (>= 2.0)
  • r-cran-rcurl
  • r-bioc-xvector (>= 0.19.7)
  • r-bioc-biostrings (>= 2.47.6)
  • r-bioc-biocio
  • r-bioc-rtracklayer (>= 1.51.5)
  • r-bioc-biomart (>= 2.17.1)
  • r-bioc-biobase (>= 2.15.1)

Suggested packages

Recommended additional packages

  • r-bioc-org.hs.eg.db
  • r-bioc-bsgenome
  • r-bioc-rsamtools
  • r-bioc-genomicalignments (>= 1.15.7)
  • r-bioc-ensembldb
  • r-bioc-annotationfilter
  • r-cran-runit
  • r-bioc-biocstyle
  • r-cran-knitr
  • r-cran-markdown

Description

GNU R tools for making and manipulating transcript centric annotations

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD50020ce84…562d6864
SHA-1297e8959…c327b525
SHA-256ff6d885d…ff5d86cf
SHA-512c099b530…adb924b6

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/GenomicFeatures
usr/lib/R/site-library/GenomicFeatures/CITATION
usr/lib/R/site-library/GenomicFeatures/DESCRIPTION
usr/lib/R/site-library/GenomicFeatures/INDEX
usr/lib/R/site-library/GenomicFeatures/Meta
usr/lib/R/site-library/GenomicFeatures/Meta/Rd.rds
usr/lib/R/site-library/GenomicFeatures/Meta/features.rds
usr/lib/R/site-library/GenomicFeatures/Meta/hsearch.rds
usr/lib/R/site-library/GenomicFeatures/Meta/links.rds
usr/lib/R/site-library/GenomicFeatures/Meta/nsInfo.rds
usr/lib/R/site-library/GenomicFeatures/Meta/package.rds
usr/lib/R/site-library/GenomicFeatures/Meta/vignette.rds
usr/lib/R/site-library/GenomicFeatures/NAMESPACE
usr/lib/R/site-library/GenomicFeatures/NEWS
usr/lib/R/site-library/GenomicFeatures/R
usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures
usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdb
usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdx
usr/lib/R/site-library/GenomicFeatures/doc
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.R
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.Rmd
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.html
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.md
usr/lib/R/site-library/GenomicFeatures/doc/index.html
usr/lib/R/site-library/GenomicFeatures/extdata
usr/lib/R/site-library/GenomicFeatures/extdata/Biomart_Ensembl_sample.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/FeatureDb.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v2.gff3
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff
usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files
usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/Aedes_aegypti.partial.gtf
usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/Aedes_aegypti.partial.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/test1.gtf
usr/lib/R/site-library/GenomicFeatures/extdata/hg19_knownGene_sample.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/sacCer2_sgdGene_txdb.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/sample_ranges.rds
usr/lib/R/site-library/GenomicFeatures/help
usr/lib/R/site-library/GenomicFeatures/help/AnIndex
usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdb
usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdx
usr/lib/R/site-library/GenomicFeatures/help/aliases.rds
usr/lib/R/site-library/GenomicFeatures/help/paths.rds
usr/lib/R/site-library/GenomicFeatures/html
usr/lib/R/site-library/GenomicFeatures/html/00Index.html
usr/lib/R/site-library/GenomicFeatures/html/R.css
usr/lib/R/site-library/GenomicFeatures/script
usr/lib/R/site-library/GenomicFeatures/script/makeTxDbs.R
usr/lib/R/site-library/GenomicFeatures/script/maketRNAFDb.R
usr/lib/R/site-library/GenomicFeatures/txdb-template
usr/lib/R/site-library/GenomicFeatures/txdb-template/DESCRIPTION
usr/lib/R/site-library/GenomicFeatures/txdb-template/NAMESPACE
usr/lib/R/site-library/GenomicFeatures/txdb-template/R
usr/lib/R/site-library/GenomicFeatures/txdb-template/R/zzz.R
usr/lib/R/site-library/GenomicFeatures/txdb-template/man
usr/lib/R/site-library/GenomicFeatures/txdb-template/man/package.Rd
usr/lib/R/site-library/GenomicFeatures/unitTests
usr/lib/R/site-library/GenomicFeatures/unitTests/test_TxDb_seqinfo.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_coordinate-mapping-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_exonicParts.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_getPromoterSeq-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeIdsForUniqueDataFrameRows.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDb.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromBiomart.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromGFF.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromGRanges.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromUCSC.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_mapIdsToRanges.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_nearest-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_select-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcripts.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsBy.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsByOverlaps.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-genomicfeatures
usr/share/doc/r-bioc-genomicfeatures/changelog.Debian.gz
usr/share/doc/r-bioc-genomicfeatures/copyright