toil (5.9.2-2+deb12u1)

Details

Core information at a glance

Distribution
debian
Origin
debian-bookworm
Repository
https://deb.debian.org/debian
Codename
bookworm
Component
main
Source
none
Architecture
amd64
Section
net
Priority
optional
Maintainer
Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
3.4 kB
Size expected
674.6 kB
Size actual
674.6 kB
Size match

Dependencies

Required package dependencies

  • python3-dateutil
  • python3-dill
  • python3-docker
  • python3-enlighten
  • python3-psutil
  • python3-pubsub
  • python3-requests
  • python3-typing-extensions
  • python3-tz
  • python3:any
  • python3-distutils
  • cwltool (>= 3.1.20221201130942)
  • python3-schema-salad (>= 8.4.20230128170514)
  • python3-boto
  • python3-boto3

Suggested packages

Recommended additional packages

  • podman | docker.io | singularity-container | docker-ce
  • python3-azure
  • python3-azure-storage
  • python3-idna

Description

cross-platform workflow engine

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD584e85a67…4ae84d3b
SHA-110c579bf…ff89667d
SHA-25602b49fa4…96ac5433
SHA-512953ce0a2…4c4f7b9d

Contents

Files and directories included

.
usr
usr/bin
usr/bin/_toil_contained_executor
usr/bin/_toil_worker
usr/bin/toil
usr/bin/toil-cwl-runner
usr/bin/toil-wdl-runner
usr/bin/toil-wes-cwl-runner
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/toil
usr/lib/python3/dist-packages/toil/__init__.py
usr/lib/python3/dist-packages/toil/batchSystems
usr/lib/python3/dist-packages/toil/batchSystems/__init__.py
usr/lib/python3/dist-packages/toil/batchSystems/abstractBatchSystem.py
usr/lib/python3/dist-packages/toil/batchSystems/abstractGridEngineBatchSystem.py
usr/lib/python3/dist-packages/toil/batchSystems/awsBatch.py
usr/lib/python3/dist-packages/toil/batchSystems/cleanup_support.py
usr/lib/python3/dist-packages/toil/batchSystems/contained_executor.py
usr/lib/python3/dist-packages/toil/batchSystems/gridengine.py
usr/lib/python3/dist-packages/toil/batchSystems/htcondor.py
usr/lib/python3/dist-packages/toil/batchSystems/kubernetes.py
usr/lib/python3/dist-packages/toil/batchSystems/local_support.py
usr/lib/python3/dist-packages/toil/batchSystems/lsf.py
usr/lib/python3/dist-packages/toil/batchSystems/lsfHelper.py
usr/lib/python3/dist-packages/toil/batchSystems/mesos
usr/lib/python3/dist-packages/toil/batchSystems/mesos/__init__.py
usr/lib/python3/dist-packages/toil/batchSystems/mesos/batchSystem.py
usr/lib/python3/dist-packages/toil/batchSystems/mesos/conftest.py
usr/lib/python3/dist-packages/toil/batchSystems/mesos/executor.py
usr/lib/python3/dist-packages/toil/batchSystems/mesos/test
usr/lib/python3/dist-packages/toil/batchSystems/mesos/test/__init__.py
usr/lib/python3/dist-packages/toil/batchSystems/options.py
usr/lib/python3/dist-packages/toil/batchSystems/parasol.py
usr/lib/python3/dist-packages/toil/batchSystems/registry.py
usr/lib/python3/dist-packages/toil/batchSystems/singleMachine.py
usr/lib/python3/dist-packages/toil/batchSystems/slurm.py
usr/lib/python3/dist-packages/toil/batchSystems/tes.py
usr/lib/python3/dist-packages/toil/batchSystems/torque.py
usr/lib/python3/dist-packages/toil/bus.py
usr/lib/python3/dist-packages/toil/common.py
usr/lib/python3/dist-packages/toil/cwl
usr/lib/python3/dist-packages/toil/cwl/__init__.py
usr/lib/python3/dist-packages/toil/cwl/conftest.py
usr/lib/python3/dist-packages/toil/cwl/cwltoil.py
usr/lib/python3/dist-packages/toil/cwl/utils.py
usr/lib/python3/dist-packages/toil/deferred.py
usr/lib/python3/dist-packages/toil/fileStores
usr/lib/python3/dist-packages/toil/fileStores/__init__.py
usr/lib/python3/dist-packages/toil/fileStores/abstractFileStore.py
usr/lib/python3/dist-packages/toil/fileStores/cachingFileStore.py
usr/lib/python3/dist-packages/toil/fileStores/nonCachingFileStore.py
usr/lib/python3/dist-packages/toil/job.py
usr/lib/python3/dist-packages/toil/jobStores
usr/lib/python3/dist-packages/toil/jobStores/__init__.py
usr/lib/python3/dist-packages/toil/jobStores/abstractJobStore.py
usr/lib/python3/dist-packages/toil/jobStores/aws
usr/lib/python3/dist-packages/toil/jobStores/aws/__init__.py
usr/lib/python3/dist-packages/toil/jobStores/aws/jobStore.py
usr/lib/python3/dist-packages/toil/jobStores/aws/utils.py
usr/lib/python3/dist-packages/toil/jobStores/conftest.py
usr/lib/python3/dist-packages/toil/jobStores/fileJobStore.py
usr/lib/python3/dist-packages/toil/jobStores/googleJobStore.py
usr/lib/python3/dist-packages/toil/jobStores/utils.py
usr/lib/python3/dist-packages/toil/leader.py
usr/lib/python3/dist-packages/toil/lib
usr/lib/python3/dist-packages/toil/lib/__init__.py
usr/lib/python3/dist-packages/toil/lib/accelerators.py
usr/lib/python3/dist-packages/toil/lib/aws
usr/lib/python3/dist-packages/toil/lib/aws/__init__.py
usr/lib/python3/dist-packages/toil/lib/aws/ami.py
usr/lib/python3/dist-packages/toil/lib/aws/iam.py
usr/lib/python3/dist-packages/toil/lib/aws/session.py
usr/lib/python3/dist-packages/toil/lib/aws/utils.py
usr/lib/python3/dist-packages/toil/lib/bioio.py
usr/lib/python3/dist-packages/toil/lib/compatibility.py
usr/lib/python3/dist-packages/toil/lib/conversions.py
usr/lib/python3/dist-packages/toil/lib/docker.py
usr/lib/python3/dist-packages/toil/lib/ec2.py
usr/lib/python3/dist-packages/toil/lib/ec2nodes.py
usr/lib/python3/dist-packages/toil/lib/encryption
usr/lib/python3/dist-packages/toil/lib/encryption/__init__.py
usr/lib/python3/dist-packages/toil/lib/encryption/_dummy.py
usr/lib/python3/dist-packages/toil/lib/encryption/_nacl.py
usr/lib/python3/dist-packages/toil/lib/encryption/conftest.py
usr/lib/python3/dist-packages/toil/lib/exceptions.py
usr/lib/python3/dist-packages/toil/lib/expando.py
usr/lib/python3/dist-packages/toil/lib/generatedEC2Lists.py
usr/lib/python3/dist-packages/toil/lib/humanize.py
usr/lib/python3/dist-packages/toil/lib/io.py
usr/lib/python3/dist-packages/toil/lib/iterables.py
usr/lib/python3/dist-packages/toil/lib/memoize.py
usr/lib/python3/dist-packages/toil/lib/misc.py
usr/lib/python3/dist-packages/toil/lib/objects.py
usr/lib/python3/dist-packages/toil/lib/resources.py
usr/lib/python3/dist-packages/toil/lib/retry.py
usr/lib/python3/dist-packages/toil/lib/threading.py
usr/lib/python3/dist-packages/toil/lib/throttle.py
usr/lib/python3/dist-packages/toil/provisioners
usr/lib/python3/dist-packages/toil/provisioners/__init__.py
usr/lib/python3/dist-packages/toil/provisioners/abstractProvisioner.py
usr/lib/python3/dist-packages/toil/provisioners/aws
usr/lib/python3/dist-packages/toil/provisioners/aws/__init__.py
usr/lib/python3/dist-packages/toil/provisioners/aws/awsProvisioner.py
usr/lib/python3/dist-packages/toil/provisioners/clusterScaler.py
usr/lib/python3/dist-packages/toil/provisioners/gceProvisioner.py
usr/lib/python3/dist-packages/toil/provisioners/node.py
usr/lib/python3/dist-packages/toil/realtimeLogger.py
usr/lib/python3/dist-packages/toil/resource.py
usr/lib/python3/dist-packages/toil/server
usr/lib/python3/dist-packages/toil/server/__init__.py
usr/lib/python3/dist-packages/toil/server/api_spec
usr/lib/python3/dist-packages/toil/server/api_spec/__init__.py
usr/lib/python3/dist-packages/toil/server/api_spec/workflow_execution_service.swagger.yaml
usr/lib/python3/dist-packages/toil/server/app.py
usr/lib/python3/dist-packages/toil/server/celery_app.py
usr/lib/python3/dist-packages/toil/server/cli
usr/lib/python3/dist-packages/toil/server/cli/__init__.py
usr/lib/python3/dist-packages/toil/server/cli/wes_cwl_runner.py
usr/lib/python3/dist-packages/toil/server/utils.py
usr/lib/python3/dist-packages/toil/server/wes
usr/lib/python3/dist-packages/toil/server/wes/__init__.py
usr/lib/python3/dist-packages/toil/server/wes/abstract_backend.py
usr/lib/python3/dist-packages/toil/server/wes/amazon_wes_utils.py
usr/lib/python3/dist-packages/toil/server/wes/tasks.py
usr/lib/python3/dist-packages/toil/server/wes/toil_backend.py
usr/lib/python3/dist-packages/toil/server/wsgi_app.py
usr/lib/python3/dist-packages/toil/serviceManager.py
usr/lib/python3/dist-packages/toil/statsAndLogging.py
usr/lib/python3/dist-packages/toil/test
usr/lib/python3/dist-packages/toil/test/__init__.py
usr/lib/python3/dist-packages/toil/test/batchSystems
usr/lib/python3/dist-packages/toil/test/batchSystems/__init__.py
usr/lib/python3/dist-packages/toil/test/batchSystems/batchSystemTest.py
usr/lib/python3/dist-packages/toil/test/batchSystems/parasolTestSupport.py
usr/lib/python3/dist-packages/toil/test/batchSystems/test_lsf_helper.py
usr/lib/python3/dist-packages/toil/test/batchSystems/test_slurm.py
usr/lib/python3/dist-packages/toil/test/cwl
usr/lib/python3/dist-packages/toil/test/cwl/__init__.py
usr/lib/python3/dist-packages/toil/test/cwl/alwaysfails.cwl
usr/lib/python3/dist-packages/toil/test/cwl/colon_test_output.cwl
usr/lib/python3/dist-packages/toil/test/cwl/colon_test_output_job.yaml
usr/lib/python3/dist-packages/toil/test/cwl/conditional_wf.cwl
usr/lib/python3/dist-packages/toil/test/cwl/conditional_wf.yaml
usr/lib/python3/dist-packages/toil/test/cwl/conftest.py
usr/lib/python3/dist-packages/toil/test/cwl/cwlTest.py
usr/lib/python3/dist-packages/toil/test/cwl/directory_from_directory.cwl
usr/lib/python3/dist-packages/toil/test/cwl/download.cwl
usr/lib/python3/dist-packages/toil/test/cwl/download_directory.cwl
usr/lib/python3/dist-packages/toil/test/cwl/download_subdirectory.cwl
usr/lib/python3/dist-packages/toil/test/cwl/echo-stderr.cwl
usr/lib/python3/dist-packages/toil/test/cwl/echo-stdout-log-dir.cwl
usr/lib/python3/dist-packages/toil/test/cwl/echo.cwl
usr/lib/python3/dist-packages/toil/test/cwl/echo_string.cwl
usr/lib/python3/dist-packages/toil/test/cwl/echo_string_scatter_capture_stdout.cwl
usr/lib/python3/dist-packages/toil/test/cwl/file_from_directory.cwl
usr/lib/python3/dist-packages/toil/test/cwl/load_contents.cwl
usr/lib/python3/dist-packages/toil/test/cwl/mpi_simple.cwl
usr/lib/python3/dist-packages/toil/test/cwl/nvidia_smi.cwl
usr/lib/python3/dist-packages/toil/test/cwl/revsort.cwl
usr/lib/python3/dist-packages/toil/test/cwl/revsort2.cwl
usr/lib/python3/dist-packages/toil/test/cwl/revtool.cwl
usr/lib/python3/dist-packages/toil/test/cwl/revtool2.cwl
usr/lib/python3/dist-packages/toil/test/cwl/s3_secondary_file.cwl
usr/lib/python3/dist-packages/toil/test/cwl/seqtk_seq.cwl
usr/lib/python3/dist-packages/toil/test/cwl/sorttool.cwl
usr/lib/python3/dist-packages/toil/test/cwl/stream.cwl
usr/lib/python3/dist-packages/toil/test/cwl/test_filename_conflict_resolution.cwl
usr/lib/python3/dist-packages/toil/test/docs
usr/lib/python3/dist-packages/toil/test/docs/__init__.py
usr/lib/python3/dist-packages/toil/test/docs/scriptsTest.py
usr/lib/python3/dist-packages/toil/test/jobStores
usr/lib/python3/dist-packages/toil/test/jobStores/__init__.py
usr/lib/python3/dist-packages/toil/test/jobStores/jobStoreTest.py
usr/lib/python3/dist-packages/toil/test/lib
usr/lib/python3/dist-packages/toil/test/lib/__init__.py
usr/lib/python3/dist-packages/toil/test/lib/aws
usr/lib/python3/dist-packages/toil/test/lib/aws/__init__.py
usr/lib/python3/dist-packages/toil/test/lib/aws/test_iam.py
usr/lib/python3/dist-packages/toil/test/lib/aws/test_s3.py
usr/lib/python3/dist-packages/toil/test/lib/aws/test_utils.py
usr/lib/python3/dist-packages/toil/test/lib/dockerTest.py
usr/lib/python3/dist-packages/toil/test/lib/test_conversions.py
usr/lib/python3/dist-packages/toil/test/lib/test_ec2.py
usr/lib/python3/dist-packages/toil/test/lib/test_misc.py
usr/lib/python3/dist-packages/toil/test/mesos
usr/lib/python3/dist-packages/toil/test/mesos/MesosDataStructuresTest.py
usr/lib/python3/dist-packages/toil/test/mesos/__init__.py
usr/lib/python3/dist-packages/toil/test/mesos/helloWorld.py
usr/lib/python3/dist-packages/toil/test/mesos/stress.py
usr/lib/python3/dist-packages/toil/test/provisioners
usr/lib/python3/dist-packages/toil/test/provisioners/__init__.py
usr/lib/python3/dist-packages/toil/test/provisioners/aws
usr/lib/python3/dist-packages/toil/test/provisioners/aws/__init__.py
usr/lib/python3/dist-packages/toil/test/provisioners/aws/awsProvisionerTest.py
usr/lib/python3/dist-packages/toil/test/provisioners/clusterScalerTest.py
usr/lib/python3/dist-packages/toil/test/provisioners/clusterTest.py
usr/lib/python3/dist-packages/toil/test/provisioners/gceProvisionerTest.py
usr/lib/python3/dist-packages/toil/test/provisioners/provisionerTest.py
usr/lib/python3/dist-packages/toil/test/provisioners/restartScript.py
usr/lib/python3/dist-packages/toil/test/server
usr/lib/python3/dist-packages/toil/test/server/__init__.py
usr/lib/python3/dist-packages/toil/test/server/serverTest.py
usr/lib/python3/dist-packages/toil/test/sort
usr/lib/python3/dist-packages/toil/test/sort/__init__.py
usr/lib/python3/dist-packages/toil/test/sort/restart_sort.py
usr/lib/python3/dist-packages/toil/test/sort/sort.py
usr/lib/python3/dist-packages/toil/test/sort/sortTest.py
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usr/lib/python3/dist-packages/toil/test/src/__init__.py
usr/lib/python3/dist-packages/toil/test/src/autoDeploymentTest.py
usr/lib/python3/dist-packages/toil/test/src/busTest.py
usr/lib/python3/dist-packages/toil/test/src/checkpointTest.py
usr/lib/python3/dist-packages/toil/test/src/deferredFunctionTest.py
usr/lib/python3/dist-packages/toil/test/src/dockerCheckTest.py
usr/lib/python3/dist-packages/toil/test/src/fileStoreTest.py
usr/lib/python3/dist-packages/toil/test/src/helloWorldTest.py
usr/lib/python3/dist-packages/toil/test/src/importExportFileTest.py
usr/lib/python3/dist-packages/toil/test/src/jobDescriptionTest.py
usr/lib/python3/dist-packages/toil/test/src/jobEncapsulationTest.py
usr/lib/python3/dist-packages/toil/test/src/jobFileStoreTest.py
usr/lib/python3/dist-packages/toil/test/src/jobServiceTest.py
usr/lib/python3/dist-packages/toil/test/src/jobTest.py
usr/lib/python3/dist-packages/toil/test/src/miscTests.py
usr/lib/python3/dist-packages/toil/test/src/promisedRequirementTest.py
usr/lib/python3/dist-packages/toil/test/src/promisesTest.py
usr/lib/python3/dist-packages/toil/test/src/realtimeLoggerTest.py
usr/lib/python3/dist-packages/toil/test/src/regularLogTest.py
usr/lib/python3/dist-packages/toil/test/src/resourceTest.py
usr/lib/python3/dist-packages/toil/test/src/restartDAGTest.py
usr/lib/python3/dist-packages/toil/test/src/resumabilityTest.py
usr/lib/python3/dist-packages/toil/test/src/retainTempDirTest.py
usr/lib/python3/dist-packages/toil/test/src/systemTest.py
usr/lib/python3/dist-packages/toil/test/src/threadingTest.py
usr/lib/python3/dist-packages/toil/test/src/toilContextManagerTest.py
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usr/share
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