r-cran-seurat (4.3.0-1)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-bookworm
- Repository
- https://deb.debian.org/debian
- Codename
- bookworm
- Component
- main
- Source
- none
- Architecture
- arm64
- Section
- gnu-r
- Priority
- optional
- Maintainer
- Debian R Packages Maintainers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 3.6 kB
- Size expected
- 3 MB
- Size actual
- 3 MB
- Size match
Dependencies
Required package dependencies
- r-base-core (>= 4.2.2.20221110-1)
- r-api-4.0
- r-cran-cluster
- r-cran-cowplot
- r-cran-fitdistrplus
- r-cran-future
- r-cran-future.apply
- r-cran-ggplot2 (>= 3.3.0)
- r-cran-ggrepel
- r-cran-ggridges
- r-cran-httr
- r-cran-ica
- r-cran-igraph
- r-cran-irlba
- r-cran-jsonlite
- r-cran-kernsmooth
- r-cran-leiden (>= 0.3.1)
- r-cran-lmtest
- r-cran-mass
- r-cran-matrix (>= 1.5-0)
- r-cran-matrixstats
- r-cran-miniui
- r-cran-patchwork
- r-cran-pbapply
- r-cran-plotly (>= 4.9.0)
- r-cran-png
- r-cran-progressr
- r-cran-rann
- r-cran-rcolorbrewer
- r-cran-rcpp (>= 1.0.7)
- r-cran-rcppannoy (>= 0.0.18)
- r-cran-reticulate
- r-cran-rlang
- r-cran-rocr
- r-cran-rtsne
- r-cran-scales
- r-cran-scattermore (>= 0.7)
- r-cran-sctransform (>= 0.3.5)
- r-cran-seuratobject (>= 4.1.3)
- r-cran-shiny
- r-cran-spatstat.explore
- r-cran-spatstat.geom
- r-cran-tibble
- r-cran-uwot (>= 0.1.14)
- r-cran-rcppeigen
- r-cran-rcppprogress
- libc6 (>= 2.32)
- libgcc-s1 (>= 3.0)
- libstdc++6 (>= 11)
Suggested packages
Recommended additional packages
- r-cran-ape
- r-cran-rsvd
- r-bioc-s4vectors
- r-bioc-summarizedexperiment
- r-bioc-singlecellexperiment
- r-bioc-deseq2
- r-bioc-biocgenerics
- r-bioc-genomicranges
- r-bioc-genomeinfodb
- r-bioc-iranges
- r-bioc-rtracklayer
- r-bioc-monocle
- r-bioc-biobase
- r-cran-vgam
- r-bioc-limma
- r-cran-metap
- r-cran-mixtools
- r-cran-ggrastr
- r-cran-data.table
- r-cran-r.utils
Description
Tools for Single Cell Genomics
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | e850f008…70f1c5a1 | |
| SHA-1 | 52c63ce8…b59e3cd7 | |
| SHA-256 | 0e074004…d6b79e20 | |
| SHA-512 | 856592f7…4090fc52 |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/Seurat usr/lib/R/site-library/Seurat/CITATION usr/lib/R/site-library/Seurat/DESCRIPTION usr/lib/R/site-library/Seurat/INDEX usr/lib/R/site-library/Seurat/Meta usr/lib/R/site-library/Seurat/Meta/Rd.rds usr/lib/R/site-library/Seurat/Meta/data.rds usr/lib/R/site-library/Seurat/Meta/features.rds usr/lib/R/site-library/Seurat/Meta/hsearch.rds usr/lib/R/site-library/Seurat/Meta/links.rds usr/lib/R/site-library/Seurat/Meta/nsInfo.rds usr/lib/R/site-library/Seurat/Meta/package.rds usr/lib/R/site-library/Seurat/NAMESPACE usr/lib/R/site-library/Seurat/NEWS.md usr/lib/R/site-library/Seurat/R usr/lib/R/site-library/Seurat/R/Seurat usr/lib/R/site-library/Seurat/R/Seurat.rdb usr/lib/R/site-library/Seurat/R/Seurat.rdx usr/lib/R/site-library/Seurat/data usr/lib/R/site-library/Seurat/data/Rdata.rdb usr/lib/R/site-library/Seurat/data/Rdata.rds usr/lib/R/site-library/Seurat/data/Rdata.rdx usr/lib/R/site-library/Seurat/extdata usr/lib/R/site-library/Seurat/extdata/pbmc_raw.txt usr/lib/R/site-library/Seurat/help usr/lib/R/site-library/Seurat/help/AnIndex usr/lib/R/site-library/Seurat/help/Seurat.rdb usr/lib/R/site-library/Seurat/help/Seurat.rdx usr/lib/R/site-library/Seurat/help/aliases.rds usr/lib/R/site-library/Seurat/help/paths.rds usr/lib/R/site-library/Seurat/html usr/lib/R/site-library/Seurat/html/00Index.html usr/lib/R/site-library/Seurat/html/R.css usr/lib/R/site-library/Seurat/libs usr/lib/R/site-library/Seurat/libs/Seurat.so usr/share usr/share/doc usr/share/doc/r-cran-seurat usr/share/doc/r-cran-seurat/changelog.Debian.gz usr/share/doc/r-cran-seurat/copyright usr/share/doc/r-cran-seurat/run-unit-test usr/share/doc/r-cran-seurat/tests usr/share/doc/r-cran-seurat/tests/testdata usr/share/doc/r-cran-seurat/tests/testdata/barcodes.tsv usr/share/doc/r-cran-seurat/tests/testdata/cr3.0 usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/barcodes.tsv.gz usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/features.tsv.gz usr/share/doc/r-cran-seurat/tests/testdata/cr3.0/matrix.mtx.gz usr/share/doc/r-cran-seurat/tests/testdata/genes.tsv.gz usr/share/doc/r-cran-seurat/tests/testdata/matrix.mtx.gz usr/share/doc/r-cran-seurat/tests/testdata/nbt_small.Rdata.gz usr/share/doc/r-cran-seurat/tests/testdata/visium usr/share/doc/r-cran-seurat/tests/testdata/visium/filtered_feature_bc_matrix.h5.gz usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/scalefactors_json.json usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_lowres_image.png usr/share/doc/r-cran-seurat/tests/testdata/visium/spatial/tissue_positions_list.csv.gz usr/share/doc/r-cran-seurat/tests/testthat usr/share/doc/r-cran-seurat/tests/testthat/test_data_manipulation.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_differential_expression.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_dimensional_reduction.R usr/share/doc/r-cran-seurat/tests/testthat/test_integratedata.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_integration.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_load_10X.R usr/share/doc/r-cran-seurat/tests/testthat/test_modularity_optimizer.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_objects.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_preprocessing.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_read_mtx.R usr/share/doc/r-cran-seurat/tests/testthat/test_transferdata.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_utilities.R.gz usr/share/doc/r-cran-seurat/tests/testthat/test_visualization.R usr/share/doc/r-cran-seurat/tests/testthat.R