r-bioc-beachmat (2.14.0+ds-1)

Details

Core information at a glance

Distribution
debian
Origin
debian-bookworm
Repository
https://deb.debian.org/debian
Codename
bookworm
Component
main
Source
none
Architecture
armel
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.1 kB
Size expected
185.7 kB
Size actual
185.7 kB
Size match

Dependencies

Required package dependencies

  • r-base-core (>= 4.2.2.20221110-1)
  • r-api-4.0
  • r-api-bioc-3.16
  • r-bioc-delayedarray (>= 0.15.14)
  • r-bioc-biocgenerics
  • r-cran-matrix
  • r-cran-rcpp
  • libc6 (>= 2.4)
  • libgcc-s1 (>= 3.5)
  • libstdc++6 (>= 5.2)

Suggested packages

Recommended additional packages

  • r-cran-testthat
  • r-bioc-biocstyle
  • r-cran-knitr
  • r-cran-rmarkdown
  • r-cran-rcmdcheck
  • r-bioc-biocparallel
  • r-bioc-hdf5array

Description

I/O for several formats storing matrix data

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD569035f24…8003684c
SHA-16107084d…20e7cbad
SHA-25622848830…d20c1aee
SHA-5122c701779…fa58ad75

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/beachmat
usr/lib/R/site-library/beachmat/CITATION
usr/lib/R/site-library/beachmat/DESCRIPTION
usr/lib/R/site-library/beachmat/INDEX
usr/lib/R/site-library/beachmat/Meta
usr/lib/R/site-library/beachmat/Meta/Rd.rds
usr/lib/R/site-library/beachmat/Meta/features.rds
usr/lib/R/site-library/beachmat/Meta/hsearch.rds
usr/lib/R/site-library/beachmat/Meta/links.rds
usr/lib/R/site-library/beachmat/Meta/nsInfo.rds
usr/lib/R/site-library/beachmat/Meta/package.rds
usr/lib/R/site-library/beachmat/Meta/vignette.rds
usr/lib/R/site-library/beachmat/NAMESPACE
usr/lib/R/site-library/beachmat/NEWS.Rd
usr/lib/R/site-library/beachmat/R
usr/lib/R/site-library/beachmat/R/beachmat
usr/lib/R/site-library/beachmat/R/beachmat.rdb
usr/lib/R/site-library/beachmat/R/beachmat.rdx
usr/lib/R/site-library/beachmat/doc
usr/lib/R/site-library/beachmat/doc/external.R
usr/lib/R/site-library/beachmat/doc/external.Rmd
usr/lib/R/site-library/beachmat/doc/index.html
usr/lib/R/site-library/beachmat/doc/input.R
usr/lib/R/site-library/beachmat/doc/input.Rmd
usr/lib/R/site-library/beachmat/doc/linking.R
usr/lib/R/site-library/beachmat/doc/linking.Rmd
usr/lib/R/site-library/beachmat/doc/output.R
usr/lib/R/site-library/beachmat/doc/output.Rmd
usr/lib/R/site-library/beachmat/easy_register.sh
usr/lib/R/site-library/beachmat/extensions
usr/lib/R/site-library/beachmat/extensions/DESCRIPTION
usr/lib/R/site-library/beachmat/extensions/NAMESPACE
usr/lib/R/site-library/beachmat/extensions/R
usr/lib/R/site-library/beachmat/extensions/R/beachmat.R
usr/lib/R/site-library/beachmat/extensions/R/class.R
usr/lib/R/site-library/beachmat/extensions/src
usr/lib/R/site-library/beachmat/extensions/src/aaron_matrix.h
usr/lib/R/site-library/beachmat/extensions/src/aaron_output.h
usr/lib/R/site-library/beachmat/extensions/src/character_access.cpp
usr/lib/R/site-library/beachmat/extensions/src/character_output.cpp
usr/lib/R/site-library/beachmat/extensions/src/exports.cpp
usr/lib/R/site-library/beachmat/extensions/src/exports.h
usr/lib/R/site-library/beachmat/extensions/src/integer_access.cpp
usr/lib/R/site-library/beachmat/extensions/src/integer_output.cpp
usr/lib/R/site-library/beachmat/extensions/tests
usr/lib/R/site-library/beachmat/extensions/tests/testthat
usr/lib/R/site-library/beachmat/extensions/tests/testthat/setup-all.R
usr/lib/R/site-library/beachmat/extensions/tests/testthat/test-character.R
usr/lib/R/site-library/beachmat/extensions/tests/testthat/test-integer.R
usr/lib/R/site-library/beachmat/extensions/tests/testthat.R
usr/lib/R/site-library/beachmat/help
usr/lib/R/site-library/beachmat/help/AnIndex
usr/lib/R/site-library/beachmat/help/aliases.rds
usr/lib/R/site-library/beachmat/help/beachmat.rdb
usr/lib/R/site-library/beachmat/help/beachmat.rdx
usr/lib/R/site-library/beachmat/help/paths.rds
usr/lib/R/site-library/beachmat/html
usr/lib/R/site-library/beachmat/html/00Index.html
usr/lib/R/site-library/beachmat/html/R.css
usr/lib/R/site-library/beachmat/include
usr/lib/R/site-library/beachmat/include/beachmat
usr/lib/R/site-library/beachmat/include/beachmat/character_matrix.h
usr/lib/R/site-library/beachmat/include/beachmat/input
usr/lib/R/site-library/beachmat/include/beachmat/input/Csparse_reader.h
usr/lib/R/site-library/beachmat/include/beachmat/input/LIN_matrix.h
usr/lib/R/site-library/beachmat/include/beachmat/input/LIN_methods.h
usr/lib/R/site-library/beachmat/include/beachmat/input/delayed_reader.h
usr/lib/R/site-library/beachmat/include/beachmat/input/dense_reader.h
usr/lib/R/site-library/beachmat/include/beachmat/input/external_reader.h
usr/lib/R/site-library/beachmat/include/beachmat/input/simple_reader.h
usr/lib/R/site-library/beachmat/include/beachmat/input/unknown_reader.h
usr/lib/R/site-library/beachmat/include/beachmat/integer_matrix.h
usr/lib/R/site-library/beachmat/include/beachmat/logical_matrix.h
usr/lib/R/site-library/beachmat/include/beachmat/numeric_matrix.h
usr/lib/R/site-library/beachmat/include/beachmat/output
usr/lib/R/site-library/beachmat/include/beachmat/output/Csparse_writer.h
usr/lib/R/site-library/beachmat/include/beachmat/output/LIN_methods.h
usr/lib/R/site-library/beachmat/include/beachmat/output/LIN_output.h
usr/lib/R/site-library/beachmat/include/beachmat/output/external_writer.h
usr/lib/R/site-library/beachmat/include/beachmat/output/output_param.h
usr/lib/R/site-library/beachmat/include/beachmat/output/simple_writer.h
usr/lib/R/site-library/beachmat/include/beachmat/utils
usr/lib/R/site-library/beachmat/include/beachmat/utils/const_column.h
usr/lib/R/site-library/beachmat/include/beachmat/utils/copyable_vector.h
usr/lib/R/site-library/beachmat/include/beachmat/utils/dim_checker.h
usr/lib/R/site-library/beachmat/include/beachmat/utils/dispatch.h
usr/lib/R/site-library/beachmat/include/beachmat/utils/external.h
usr/lib/R/site-library/beachmat/include/beachmat/utils/raw_structure.h
usr/lib/R/site-library/beachmat/include/beachmat/utils/utils.h
usr/lib/R/site-library/beachmat/include/beachmat3
usr/lib/R/site-library/beachmat/include/beachmat3/Csparse_reader.h
usr/lib/R/site-library/beachmat/include/beachmat3/as_gCMatrix.h
usr/lib/R/site-library/beachmat/include/beachmat3/beachmat.h
usr/lib/R/site-library/beachmat/include/beachmat3/dim_checker.h
usr/lib/R/site-library/beachmat/include/beachmat3/lin_matrix.h
usr/lib/R/site-library/beachmat/include/beachmat3/ordinary_reader.h
usr/lib/R/site-library/beachmat/include/beachmat3/read_lin_block.h
usr/lib/R/site-library/beachmat/include/beachmat3/utils.h
usr/lib/R/site-library/beachmat/include/byteme
usr/lib/R/site-library/beachmat/include/byteme/GzipFileReader.hpp
usr/lib/R/site-library/beachmat/include/byteme/IstreamReader.hpp
usr/lib/R/site-library/beachmat/include/byteme/RawBufferReader.hpp
usr/lib/R/site-library/beachmat/include/byteme/RawFileReader.hpp
usr/lib/R/site-library/beachmat/include/byteme/Reader.hpp
usr/lib/R/site-library/beachmat/include/byteme/SomeFileReader.hpp
usr/lib/R/site-library/beachmat/include/byteme/ZlibBufferReader.hpp
usr/lib/R/site-library/beachmat/include/byteme/temp_file_path.hpp
usr/lib/R/site-library/beachmat/include/fetch.sh
usr/lib/R/site-library/beachmat/include/raticate
usr/lib/R/site-library/beachmat/include/raticate/CSparseMatrix.hpp
usr/lib/R/site-library/beachmat/include/raticate/DelayedAbind.hpp
usr/lib/R/site-library/beachmat/include/raticate/DelayedAperm.hpp
usr/lib/R/site-library/beachmat/include/raticate/DelayedMatrix.hpp
usr/lib/R/site-library/beachmat/include/raticate/DelayedSubset.hpp
usr/lib/R/site-library/beachmat/include/raticate/SimpleMatrix.hpp
usr/lib/R/site-library/beachmat/include/raticate/SparseArraySeed.hpp
usr/lib/R/site-library/beachmat/include/raticate/UnknownMatrix.hpp
usr/lib/R/site-library/beachmat/include/raticate/parallelize.hpp
usr/lib/R/site-library/beachmat/include/raticate/raticate.hpp
usr/lib/R/site-library/beachmat/include/raticate/utils.hpp
usr/lib/R/site-library/beachmat/include/tatami
usr/lib/R/site-library/beachmat/include/tatami/base
usr/lib/R/site-library/beachmat/include/tatami/base/CompressedSparseMatrix.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/DelayedBind.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/DelayedIsometricOp.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/DelayedSubset.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/DelayedSubsetBlock.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/DelayedTranspose.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/DenseMatrix.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/Matrix.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/SparseRange.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/Workspace.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/arith_scalar_helpers.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/arith_vector_helpers.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/has_data.hpp
usr/lib/R/site-library/beachmat/include/tatami/base/math_helpers.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext
usr/lib/R/site-library/beachmat/include/tatami/ext/ArrayView.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/HDF5CompressedSparseMatrix.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/HDF5DenseMatrix.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/LayeredMatrixData.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/MatrixMarket.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/MatrixMarket_layered.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/SomeNumericArray.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/convert_to_layered_sparse.hpp
usr/lib/R/site-library/beachmat/include/tatami/ext/layered_utils.hpp
usr/lib/R/site-library/beachmat/include/tatami/stats
usr/lib/R/site-library/beachmat/include/tatami/stats/apply.hpp
usr/lib/R/site-library/beachmat/include/tatami/stats/config.hpp
usr/lib/R/site-library/beachmat/include/tatami/stats/medians.hpp
usr/lib/R/site-library/beachmat/include/tatami/stats/ranges.hpp
usr/lib/R/site-library/beachmat/include/tatami/stats/sums.hpp
usr/lib/R/site-library/beachmat/include/tatami/stats/variances.hpp
usr/lib/R/site-library/beachmat/include/tatami/tatami.h
usr/lib/R/site-library/beachmat/include/tatami/tatami.hpp
usr/lib/R/site-library/beachmat/include/tatami/utils
usr/lib/R/site-library/beachmat/include/tatami/utils/NakedArray.hpp
usr/lib/R/site-library/beachmat/include/tatami/utils/bind_intersection.hpp
usr/lib/R/site-library/beachmat/include/tatami/utils/compress_sparse_triplets.hpp
usr/lib/R/site-library/beachmat/include/tatami/utils/convert_to_dense.hpp
usr/lib/R/site-library/beachmat/include/tatami/utils/convert_to_sparse.hpp
usr/lib/R/site-library/beachmat/include/tatami/utils/wrap_shared_ptr.hpp
usr/lib/R/site-library/beachmat/libs
usr/lib/R/site-library/beachmat/libs/beachmat.so
usr/lib/R/site-library/beachmat/newtests
usr/lib/R/site-library/beachmat/newtests/DESCRIPTION
usr/lib/R/site-library/beachmat/newtests/NAMESPACE
usr/lib/R/site-library/beachmat/newtests/R
usr/lib/R/site-library/beachmat/newtests/R/RcppExports.R
usr/lib/R/site-library/beachmat/newtests/R/namespace.R
usr/lib/R/site-library/beachmat/newtests/src
usr/lib/R/site-library/beachmat/newtests/src/RcppExports.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_clone.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_errors.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_get_column.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_get_row.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_get_sparse_column.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_get_sparse_row.cpp
usr/lib/R/site-library/beachmat/newtests/src/test_promotion.cpp
usr/lib/R/site-library/beachmat/newtests/tests
usr/lib/R/site-library/beachmat/newtests/tests/testthat
usr/lib/R/site-library/beachmat/newtests/tests/testthat/setup.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-clone.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-dense-column.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-dense-row.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-error.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-promotion.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-sparse-column.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat/test-sparse-row.R
usr/lib/R/site-library/beachmat/newtests/tests/testthat.R
usr/lib/R/site-library/beachmat/testpkg
usr/lib/R/site-library/beachmat/testpkg/DESCRIPTION
usr/lib/R/site-library/beachmat/testpkg/NAMESPACE
usr/lib/R/site-library/beachmat/testpkg/R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_all.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_class.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_const.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_errors.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_indexed.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_multi.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_slice.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_type.R
usr/lib/R/site-library/beachmat/testpkg/R/check_read_varslice.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_all.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_class.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_errors.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_indexed.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_slice.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_type.R
usr/lib/R/site-library/beachmat/testpkg/R/check_write_varslice.R
usr/lib/R/site-library/beachmat/testpkg/R/delayed_funs.R
usr/lib/R/site-library/beachmat/testpkg/R/namespace.R
usr/lib/R/site-library/beachmat/testpkg/R/utils.R
usr/lib/R/site-library/beachmat/testpkg/man
usr/lib/R/site-library/beachmat/testpkg/man/check_read.Rd
usr/lib/R/site-library/beachmat/testpkg/man/check_write.Rd
usr/lib/R/site-library/beachmat/testpkg/man/delayed_funs.Rd
usr/lib/R/site-library/beachmat/testpkg/src
usr/lib/R/site-library/beachmat/testpkg/src/beachtest.h
usr/lib/R/site-library/beachmat/testpkg/src/get_all.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_all.h
usr/lib/R/site-library/beachmat/testpkg/src/get_class.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_const.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_const.h
usr/lib/R/site-library/beachmat/testpkg/src/get_errors.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_errors.h
usr/lib/R/site-library/beachmat/testpkg/src/get_indexed.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_indexed.h
usr/lib/R/site-library/beachmat/testpkg/src/get_multi.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_multi.h
usr/lib/R/site-library/beachmat/testpkg/src/get_slice.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_slice.h
usr/lib/R/site-library/beachmat/testpkg/src/get_types.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_varslice.cpp
usr/lib/R/site-library/beachmat/testpkg/src/get_varslice.h
usr/lib/R/site-library/beachmat/testpkg/src/set_all.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_all.h
usr/lib/R/site-library/beachmat/testpkg/src/set_class.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_errors.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_errors.h
usr/lib/R/site-library/beachmat/testpkg/src/set_indexed.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_indexed.h
usr/lib/R/site-library/beachmat/testpkg/src/set_slice.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_slice.h
usr/lib/R/site-library/beachmat/testpkg/src/set_types.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_varslice.cpp
usr/lib/R/site-library/beachmat/testpkg/src/set_varslice.h
usr/lib/R/site-library/beachmat/testpkg/tests
usr/lib/R/site-library/beachmat/testpkg/tests/testthat
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/setup-fun.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-character-input.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-character-output.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-error.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-integer-input.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-integer-output.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-logical-input.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-logical-output.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-numeric-input.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat/test-numeric-output.R
usr/lib/R/site-library/beachmat/testpkg/tests/testthat.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-beachmat
usr/share/doc/r-bioc-beachmat/changelog.Debian.gz
usr/share/doc/r-bioc-beachmat/copyright