r-bioc-deseq2 (1.38.3+dfsg-1)

Details

Core information at a glance

Distribution
debian
Origin
debian-bookworm
Repository
https://deb.debian.org/debian
Codename
bookworm
Component
main
Source
none
Architecture
armhf
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.7 kB
Size expected
1.3 MB
Size actual
1.3 MB
Size match

Dependencies

Required package dependencies

  • r-base-core (>= 4.2.2.20221110-2)
  • r-api-4.0
  • r-api-bioc-3.16
  • r-bioc-s4vectors (>= 0.23.18)
  • r-bioc-iranges
  • r-bioc-genomicranges
  • r-bioc-summarizedexperiment (>= 1.1.6)
  • r-bioc-biocgenerics (>= 0.7.5)
  • r-bioc-biobase
  • r-bioc-biocparallel
  • r-cran-matrixstats
  • r-cran-locfit
  • r-bioc-geneplotter
  • r-cran-ggplot2
  • r-cran-rcpp (>= 0.11.0)
  • r-cran-rcpparmadillo
  • libblas3 | libblas.so.3
  • libc6 (>= 2.29)
  • libgcc-s1 (>= 3.5)
  • liblapack3 | liblapack.so.3
  • libstdc++6 (>= 5.2)

Suggested packages

Recommended additional packages

  • r-cran-testthat
  • r-cran-knitr
  • r-cran-rmarkdown
  • r-cran-pheatmap
  • r-cran-rcolorbrewer
  • r-bioc-tximport
  • r-bioc-tximeta
  • r-bioc-tximportdata
  • r-cran-readr
  • r-cran-pbapply
  • r-bioc-glmgampoi
  • r-cran-biocmanager

Description

R package for RNA-Seq Differential Expression Analysis

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5f14eab57…8a9b6976
SHA-107407144…72905bd7
SHA-256b16e7cc7…400365c4
SHA-51289cc0bc6…bbc540ab

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/DESeq2
usr/lib/R/site-library/DESeq2/CITATION
usr/lib/R/site-library/DESeq2/DESCRIPTION
usr/lib/R/site-library/DESeq2/INDEX
usr/lib/R/site-library/DESeq2/Meta
usr/lib/R/site-library/DESeq2/Meta/Rd.rds
usr/lib/R/site-library/DESeq2/Meta/features.rds
usr/lib/R/site-library/DESeq2/Meta/hsearch.rds
usr/lib/R/site-library/DESeq2/Meta/links.rds
usr/lib/R/site-library/DESeq2/Meta/nsInfo.rds
usr/lib/R/site-library/DESeq2/Meta/package.rds
usr/lib/R/site-library/DESeq2/Meta/vignette.rds
usr/lib/R/site-library/DESeq2/NAMESPACE
usr/lib/R/site-library/DESeq2/NEWS
usr/lib/R/site-library/DESeq2/R
usr/lib/R/site-library/DESeq2/R/DESeq2
usr/lib/R/site-library/DESeq2/R/DESeq2.rdb
usr/lib/R/site-library/DESeq2/R/DESeq2.rdx
usr/lib/R/site-library/DESeq2/doc
usr/lib/R/site-library/DESeq2/doc/DESeq2.R
usr/lib/R/site-library/DESeq2/doc/DESeq2.Rmd
usr/lib/R/site-library/DESeq2/doc/index.html
usr/lib/R/site-library/DESeq2/extdata
usr/lib/R/site-library/DESeq2/extdata/singleCellTab.csv
usr/lib/R/site-library/DESeq2/help
usr/lib/R/site-library/DESeq2/help/AnIndex
usr/lib/R/site-library/DESeq2/help/DESeq2.rdb
usr/lib/R/site-library/DESeq2/help/DESeq2.rdx
usr/lib/R/site-library/DESeq2/help/aliases.rds
usr/lib/R/site-library/DESeq2/help/paths.rds
usr/lib/R/site-library/DESeq2/html
usr/lib/R/site-library/DESeq2/html/00Index.html
usr/lib/R/site-library/DESeq2/html/R.css
usr/lib/R/site-library/DESeq2/libs
usr/lib/R/site-library/DESeq2/libs/DESeq2.so
usr/lib/R/site-library/DESeq2/script
usr/lib/R/site-library/DESeq2/script/icobra.png
usr/lib/R/site-library/DESeq2/script/icobra_benchmarks.R
usr/lib/R/site-library/DESeq2/script/icobra_pkg_versions.txt
usr/lib/R/site-library/DESeq2/script/makeSim.R
usr/lib/R/site-library/DESeq2/script/runScripts.R
usr/lib/R/site-library/DESeq2/script/testsuite.Rmd
usr/lib/R/site-library/DESeq2/script/vst.nb
usr/lib/R/site-library/DESeq2/script/vst.pdf
usr/share
usr/share/doc
usr/share/doc/r-bioc-deseq2
usr/share/doc/r-bioc-deseq2/changelog.Debian.gz
usr/share/doc/r-bioc-deseq2/copyright