r-bioc-bsgenome (1.66.3-1)

Details

Core information at a glance

Distribution
debian
Origin
debian-bookworm
Repository
https://deb.debian.org/debian
Codename
bookworm
Component
main
Source
none
Architecture
i386
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
8.1 kB
Size expected
7 MB
Size actual
7 MB
Size match

Dependencies

Required package dependencies

  • r-base-core (>= 4.2.2.20221110-2)
  • r-api-4.0
  • r-api-bioc-3.16
  • r-bioc-biocgenerics (>= 0.13.8)
  • r-bioc-s4vectors (>= 0.17.28)
  • r-bioc-iranges (>= 2.13.16)
  • r-bioc-genomeinfodb (>= 1.25.6)
  • r-bioc-genomicranges (>= 1.31.10)
  • r-bioc-biostrings (>= 2.47.6)
  • r-bioc-rtracklayer (>= 1.39.7)
  • r-cran-matrixstats
  • r-bioc-xvector (>= 0.29.3)
  • r-bioc-rsamtools

Suggested packages

Recommended additional packages

  • r-cran-biocmanager
  • r-bioc-biobase
  • r-cran-runit

Description

BioConductor infrastructure for Biostrings-based genome data packages

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD500048a78…93b382d0
SHA-11da20c9a…3db49237
SHA-2569745731c…de83de59
SHA-512a2f8b00a…c5128a6f

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/BSgenome
usr/lib/R/site-library/BSgenome/DESCRIPTION
usr/lib/R/site-library/BSgenome/INDEX
usr/lib/R/site-library/BSgenome/Meta
usr/lib/R/site-library/BSgenome/Meta/Rd.rds
usr/lib/R/site-library/BSgenome/Meta/features.rds
usr/lib/R/site-library/BSgenome/Meta/hsearch.rds
usr/lib/R/site-library/BSgenome/Meta/links.rds
usr/lib/R/site-library/BSgenome/Meta/nsInfo.rds
usr/lib/R/site-library/BSgenome/Meta/package.rds
usr/lib/R/site-library/BSgenome/Meta/vignette.rds
usr/lib/R/site-library/BSgenome/NAMESPACE
usr/lib/R/site-library/BSgenome/NEWS
usr/lib/R/site-library/BSgenome/R
usr/lib/R/site-library/BSgenome/R/BSgenome
usr/lib/R/site-library/BSgenome/R/BSgenome.rdb
usr/lib/R/site-library/BSgenome/R/BSgenome.rdx
usr/lib/R/site-library/BSgenome/doc
usr/lib/R/site-library/BSgenome/doc/BSgenomeForge.R
usr/lib/R/site-library/BSgenome/doc/BSgenomeForge.Rnw
usr/lib/R/site-library/BSgenome/doc/BSgenomeForge.pdf
usr/lib/R/site-library/BSgenome/doc/GenomeSearching.R
usr/lib/R/site-library/BSgenome/doc/GenomeSearching.Rnw
usr/lib/R/site-library/BSgenome/doc/GenomeSearching.pdf
usr/lib/R/site-library/BSgenome/doc/index.html
usr/lib/R/site-library/BSgenome/extdata
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/NOTES.TXT
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.BeeBase.assembly4-tools/splitbigfasta.sh
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.NCBI.AmelHAv3.1-tools/fasta_to_sorted_2bit.R
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Amellifera.UCSC.apiMel2.masked-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.04232008-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR10.1-tools/splitbigfasta.R
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Athaliana.TAIR.TAIR9-tools/NOTES.TXT
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6-tools
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau6.masked-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau8-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9-tools
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Btaurus.UCSC.bosTau9.masked-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce2-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Celegans.UCSC.ce6-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam2.masked-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3-tools/splitbigfasta.R
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cfamiliaris.UCSC.canFam3.masked-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac3-tools/sort_calJac3.2bit.R
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Cjacchus.UCSC.calJac4-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Creinhardtii.JGI.v5.6-tools/fasta_to_2bit.R
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/NOTES.TXT
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer5-tools/splitbigfasta.sh
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/NOTES.TXT
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer6-tools/splitbigfasta.R
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Drerio.UCSC.danRer7-tools/splitbigfasta.R
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.NCBI.GRCh38-tools
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg17-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Hsapiens.UCSC.hg38-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mdomestica.UCSC.monDom5-tools
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.5.0-tools/fasta_to_sorted2bit.R
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.6.0-seed
usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mfascicularis.NCBI.6.0-tools
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mfuro.UCSC.musFur1-seed
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usr/lib/R/site-library/BSgenome/extdata/GentlemanLab/BSgenome.Mmulatta.UCSC.rheMac10-tools
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