r-bioc-genomicalignments (1.34.0-1)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-bookworm
- Repository
- https://deb.debian.org/debian
- Codename
- bookworm
- Component
- main
- Source
- none
- Architecture
- mipsel
- Section
- gnu-r
- Priority
- optional
- Maintainer
- Debian R Packages Maintainers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 2.9 kB
- Size expected
- 2.1 MB
- Size actual
- 2.1 MB
- Size match
Dependencies
Required package dependencies
- r-base-core (>= 4.2.2.20221110-1)
- r-api-4.0
- r-api-bioc-3.16
- r-bioc-biocgenerics (>= 0.37.0)
- r-bioc-s4vectors (>= 0.27.12)
- r-bioc-iranges (>= 2.23.9)
- r-bioc-genomeinfodb (>= 1.13.1)
- r-bioc-genomicranges (>= 1.41.5)
- r-bioc-summarizedexperiment (>= 1.9.13)
- r-bioc-biostrings (>= 2.55.7)
- r-bioc-rsamtools (>= 1.31.2)
- r-bioc-biocparallel
- libc6 (>= 2.4)
Suggested packages
Recommended additional packages
Description
BioConductor representation and manipulation of short genomic alignments
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 283da3ce…178a774b | |
| SHA-1 | 7b31008d…b9419c73 | |
| SHA-256 | 1062218f…8289c2d8 | |
| SHA-512 | 575fad42…61c84421 |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/GenomicAlignments usr/lib/R/site-library/GenomicAlignments/CITATION usr/lib/R/site-library/GenomicAlignments/DESCRIPTION usr/lib/R/site-library/GenomicAlignments/INDEX usr/lib/R/site-library/GenomicAlignments/Meta usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds usr/lib/R/site-library/GenomicAlignments/Meta/features.rds usr/lib/R/site-library/GenomicAlignments/Meta/hsearch.rds usr/lib/R/site-library/GenomicAlignments/Meta/links.rds usr/lib/R/site-library/GenomicAlignments/Meta/nsInfo.rds usr/lib/R/site-library/GenomicAlignments/Meta/package.rds usr/lib/R/site-library/GenomicAlignments/Meta/vignette.rds usr/lib/R/site-library/GenomicAlignments/NAMESPACE usr/lib/R/site-library/GenomicAlignments/NEWS usr/lib/R/site-library/GenomicAlignments/R usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdb usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx usr/lib/R/site-library/GenomicAlignments/doc usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rnw usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.pdf usr/lib/R/site-library/GenomicAlignments/doc/index.html usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.Rnw usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf usr/lib/R/site-library/GenomicAlignments/extdata usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam usr/lib/R/site-library/GenomicAlignments/help usr/lib/R/site-library/GenomicAlignments/help/AnIndex usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx usr/lib/R/site-library/GenomicAlignments/help/aliases.rds usr/lib/R/site-library/GenomicAlignments/help/paths.rds usr/lib/R/site-library/GenomicAlignments/html usr/lib/R/site-library/GenomicAlignments/html/00Index.html usr/lib/R/site-library/GenomicAlignments/html/R.css usr/lib/R/site-library/GenomicAlignments/libs usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so usr/lib/R/site-library/GenomicAlignments/unitTests usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_intra-range-methods.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignments.R usr/lib/R/site-library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R usr/share usr/share/doc usr/share/doc/r-bioc-genomicalignments usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz usr/share/doc/r-bioc-genomicalignments/copyright