r-bioc-genomicfeatures (1.42.1+dfsg-1)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-bullseye
- Repository
- https://deb.debian.org/debian
- Codename
- bullseye
- Component
- main
- Source
- none
- Architecture
- all
- Section
- gnu-r
- Priority
- optional
- Maintainer
- Debian R Packages Maintainers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 4.7 kB
- Size expected
- 1.8 MB
- Size actual
- 1.8 MB
- Size match
Dependencies
Required package dependencies
- r-base-core (>= 4.0.3-1)
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-biocgenerics (>= 0.1.0)
- r-bioc-s4vectors (>= 0.17.29)
- r-bioc-iranges (>= 2.13.23)
- r-bioc-genomeinfodb (>= 1.25.7)
- r-bioc-genomicranges (>= 1.31.17)
- r-bioc-annotationdbi (>= 1.41.4)
- r-cran-dbi
- r-cran-rsqlite (>= 2.0)
- r-cran-rcurl
- r-bioc-xvector (>= 0.19.7)
- r-bioc-biostrings (>= 2.47.6)
- r-bioc-rtracklayer (>= 1.39.7)
- r-bioc-biomart (>= 2.17.1)
- r-bioc-biobase (>= 2.15.1)
Suggested packages
Recommended additional packages
Description
GNU R tools for making and manipulating transcript centric annotations
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 50de32ec…f90173c5 | |
| SHA-1 | 14f6a35b…28e75940 | |
| SHA-256 | 95ce2979…34b409c7 | |
| SHA-512 | aec16102…258bce57 |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/GenomicFeatures usr/lib/R/site-library/GenomicFeatures/CITATION usr/lib/R/site-library/GenomicFeatures/DESCRIPTION usr/lib/R/site-library/GenomicFeatures/INDEX usr/lib/R/site-library/GenomicFeatures/Meta usr/lib/R/site-library/GenomicFeatures/Meta/Rd.rds usr/lib/R/site-library/GenomicFeatures/Meta/features.rds usr/lib/R/site-library/GenomicFeatures/Meta/hsearch.rds usr/lib/R/site-library/GenomicFeatures/Meta/links.rds usr/lib/R/site-library/GenomicFeatures/Meta/nsInfo.rds usr/lib/R/site-library/GenomicFeatures/Meta/package.rds usr/lib/R/site-library/GenomicFeatures/Meta/vignette.rds usr/lib/R/site-library/GenomicFeatures/NAMESPACE usr/lib/R/site-library/GenomicFeatures/NEWS usr/lib/R/site-library/GenomicFeatures/R usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdb usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdx usr/lib/R/site-library/GenomicFeatures/doc usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.R usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.Rnw usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.pdf usr/lib/R/site-library/GenomicFeatures/doc/index.html usr/lib/R/site-library/GenomicFeatures/extdata usr/lib/R/site-library/GenomicFeatures/extdata/Biomart_Ensembl_sample.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/FeatureDb.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/NC_011025.gff usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v1.gff3 usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/TheCanonicalGene_v2.gff3 usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.gff3 usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/a.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff usr/lib/R/site-library/GenomicFeatures/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/Aedes_aegypti.partial.gtf usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/Aedes_aegypti.partial.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/GTF_files/test1.gtf usr/lib/R/site-library/GenomicFeatures/extdata/hg19_knownGene_sample.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/sacCer2_sgdGene_txdb.sqlite usr/lib/R/site-library/GenomicFeatures/extdata/sample_ranges.rds usr/lib/R/site-library/GenomicFeatures/help usr/lib/R/site-library/GenomicFeatures/help/AnIndex usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdb usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdx usr/lib/R/site-library/GenomicFeatures/help/aliases.rds usr/lib/R/site-library/GenomicFeatures/help/paths.rds usr/lib/R/site-library/GenomicFeatures/html usr/lib/R/site-library/GenomicFeatures/html/00Index.html usr/lib/R/site-library/GenomicFeatures/html/R.css usr/lib/R/site-library/GenomicFeatures/script usr/lib/R/site-library/GenomicFeatures/script/makeTxDbs.R usr/lib/R/site-library/GenomicFeatures/script/maketRNAFDb.R usr/lib/R/site-library/GenomicFeatures/txdb-template usr/lib/R/site-library/GenomicFeatures/txdb-template/DESCRIPTION usr/lib/R/site-library/GenomicFeatures/txdb-template/NAMESPACE usr/lib/R/site-library/GenomicFeatures/txdb-template/R usr/lib/R/site-library/GenomicFeatures/txdb-template/R/zzz.R usr/lib/R/site-library/GenomicFeatures/txdb-template/man usr/lib/R/site-library/GenomicFeatures/txdb-template/man/package.Rd usr/lib/R/site-library/GenomicFeatures/unitTests usr/lib/R/site-library/GenomicFeatures/unitTests/test_TxDb_seqinfo.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_coordinate-mapping-methods.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_disjointExons.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_getPromoterSeq-methods.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeIdsForUniqueDataFrameRows.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDb.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromBiomart.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromGFF.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromGRanges.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeTxDbFromUCSC.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_mapIdsToRanges.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_nearest-methods.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_select-methods.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcripts.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsBy.R usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsByOverlaps.R usr/share usr/share/doc usr/share/doc/r-bioc-genomicfeatures usr/share/doc/r-bioc-genomicfeatures/changelog.Debian.gz usr/share/doc/r-bioc-genomicfeatures/copyright usr/share/doc/r-bioc-genomicfeatures/run-unit-test usr/share/doc/r-bioc-genomicfeatures/tests usr/share/doc/r-bioc-genomicfeatures/tests/run_unitTests.R