r-bioc-deseq2 (1.30.1+dfsg-1)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-bullseye
- Repository
- https://deb.debian.org/debian
- Codename
- bullseye
- Component
- main
- Source
- none
- Architecture
- arm64
- Section
- gnu-r
- Priority
- optional
- Maintainer
- Debian R Packages Maintainers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 1.9 kB
- Size expected
- 1.3 MB
- Size actual
- 1.3 MB
- Size match
Dependencies
Required package dependencies
- r-base-core (>= 4.0.4-1)
- r-api-4.0
- r-api-bioc-3.12
- r-bioc-s4vectors (>= 0.23.18)
- r-bioc-iranges
- r-bioc-genomicranges
- r-bioc-summarizedexperiment (>= 1.1.6)
- r-bioc-biocgenerics (>= 0.7.5)
- r-bioc-biobase
- r-bioc-biocparallel
- r-bioc-genefilter
- r-cran-locfit
- r-bioc-geneplotter
- r-cran-ggplot2
- r-cran-rcpp (>= 0.11.0)
- r-cran-rcpparmadillo
- libblas3 | libblas.so.3
- libc6 (>= 2.29)
- libgcc-s1 (>= 3.0)
- liblapack3 | liblapack.so.3
- libstdc++6 (>= 9)
Suggested packages
Recommended additional packages
Description
R package for RNA-Seq Differential Expression Analysis
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 7ec5c496…a7d2a222 | |
| SHA-1 | 09b95b05…6407eb93 | |
| SHA-256 | 6d9c0bfb…99fbda98 | |
| SHA-512 | 70a2804b…15ce512d |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/DESeq2 usr/lib/R/site-library/DESeq2/CITATION usr/lib/R/site-library/DESeq2/DESCRIPTION usr/lib/R/site-library/DESeq2/INDEX usr/lib/R/site-library/DESeq2/Meta usr/lib/R/site-library/DESeq2/Meta/Rd.rds usr/lib/R/site-library/DESeq2/Meta/features.rds usr/lib/R/site-library/DESeq2/Meta/hsearch.rds usr/lib/R/site-library/DESeq2/Meta/links.rds usr/lib/R/site-library/DESeq2/Meta/nsInfo.rds usr/lib/R/site-library/DESeq2/Meta/package.rds usr/lib/R/site-library/DESeq2/Meta/vignette.rds usr/lib/R/site-library/DESeq2/NAMESPACE usr/lib/R/site-library/DESeq2/NEWS usr/lib/R/site-library/DESeq2/R usr/lib/R/site-library/DESeq2/R/DESeq2 usr/lib/R/site-library/DESeq2/R/DESeq2.rdb usr/lib/R/site-library/DESeq2/R/DESeq2.rdx usr/lib/R/site-library/DESeq2/doc usr/lib/R/site-library/DESeq2/doc/DESeq2.R usr/lib/R/site-library/DESeq2/doc/DESeq2.Rmd usr/lib/R/site-library/DESeq2/doc/index.html usr/lib/R/site-library/DESeq2/extdata usr/lib/R/site-library/DESeq2/extdata/singleCellTab.csv usr/lib/R/site-library/DESeq2/help usr/lib/R/site-library/DESeq2/help/AnIndex usr/lib/R/site-library/DESeq2/help/DESeq2.rdb usr/lib/R/site-library/DESeq2/help/DESeq2.rdx usr/lib/R/site-library/DESeq2/help/aliases.rds usr/lib/R/site-library/DESeq2/help/paths.rds usr/lib/R/site-library/DESeq2/html usr/lib/R/site-library/DESeq2/html/00Index.html usr/lib/R/site-library/DESeq2/html/R.css usr/lib/R/site-library/DESeq2/libs usr/lib/R/site-library/DESeq2/libs/DESeq2.so usr/lib/R/site-library/DESeq2/script usr/lib/R/site-library/DESeq2/script/icobra.png usr/lib/R/site-library/DESeq2/script/icobra_benchmarks.R usr/lib/R/site-library/DESeq2/script/icobra_pkg_versions.txt usr/lib/R/site-library/DESeq2/script/makeSim.R usr/lib/R/site-library/DESeq2/script/runScripts.R usr/lib/R/site-library/DESeq2/script/testsuite.Rmd usr/lib/R/site-library/DESeq2/script/vst.nb usr/lib/R/site-library/DESeq2/script/vst.pdf usr/share usr/share/doc usr/share/doc/r-bioc-deseq2 usr/share/doc/r-bioc-deseq2/README.test usr/share/doc/r-bioc-deseq2/changelog.Debian.gz usr/share/doc/r-bioc-deseq2/copyright usr/share/doc/r-bioc-deseq2/examples usr/share/doc/r-bioc-deseq2/examples/vignettes usr/share/doc/r-bioc-deseq2/examples/vignettes/DESeq2.Rmd usr/share/doc/r-bioc-deseq2/examples/vignettes/library.bib usr/share/doc/r-bioc-deseq2/run-unit-test usr/share/doc/r-bioc-deseq2/tests usr/share/doc/r-bioc-deseq2/tests/testthat usr/share/doc/r-bioc-deseq2/tests/testthat/test_DESeq.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_LRT.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_QR.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_addMLE.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_betaFitting.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_collapse.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_construction_errors.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_design_matrix.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_dispersions.R.gz usr/share/doc/r-bioc-deseq2/tests/testthat/test_edge_case.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_factors.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_fpkm.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_interactions.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_lfcShrink.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_linear_mu.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_methods.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_model_matrix.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_nbinomWald.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_optim.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_outlier.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_parallel.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_plots.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_results.R.gz usr/share/doc/r-bioc-deseq2/tests/testthat/test_size_factor.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_txi.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_unmix.R usr/share/doc/r-bioc-deseq2/tests/testthat/test_weights.R.gz usr/share/doc/r-bioc-deseq2/tests/testthat/test_zero_zero.R usr/share/doc/r-bioc-deseq2/tests/testthat.R