r-bioc-genomeinfodb (1.26.2-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-bullseye
Repository
https://deb.debian.org/debian
Codename
bullseye
Component
main
Source
none
Architecture
i386
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
5 kB
Size expected
3.9 MB
Size actual
3.9 MB
Size match

Dependencies

Required package dependencies

  • r-base-core (>= 4.0.4-1)
  • r-api-4.0
  • r-api-bioc-3.12
  • r-bioc-biocgenerics (>= 0.13.8)
  • r-bioc-s4vectors (>= 0.25.12)
  • r-bioc-iranges (>= 2.13.12)
  • r-cran-rcurl
  • r-bioc-genomeinfodbdata

Suggested packages

Recommended additional packages

  • r-bioc-rsamtools
  • r-bioc-genomicalignments
  • r-bioc-genomicfeatures
  • r-bioc-bsgenome
  • r-bioc-biocstyle
  • r-cran-knitr

Description

BioConductor utilities for manipulating chromosome identifiers

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD56525d2d2…a4acea38
SHA-1b80f7068…405511c7
SHA-256bf1d8a9a…779c8b2a
SHA-512253f9e14…8a7e2a23

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/GenomeInfoDb
usr/lib/R/site-library/GenomeInfoDb/DESCRIPTION
usr/lib/R/site-library/GenomeInfoDb/INDEX
usr/lib/R/site-library/GenomeInfoDb/Meta
usr/lib/R/site-library/GenomeInfoDb/Meta/Rd.rds
usr/lib/R/site-library/GenomeInfoDb/Meta/features.rds
usr/lib/R/site-library/GenomeInfoDb/Meta/hsearch.rds
usr/lib/R/site-library/GenomeInfoDb/Meta/links.rds
usr/lib/R/site-library/GenomeInfoDb/Meta/nsInfo.rds
usr/lib/R/site-library/GenomeInfoDb/Meta/package.rds
usr/lib/R/site-library/GenomeInfoDb/Meta/vignette.rds
usr/lib/R/site-library/GenomeInfoDb/NAMESPACE
usr/lib/R/site-library/GenomeInfoDb/NEWS
usr/lib/R/site-library/GenomeInfoDb/R
usr/lib/R/site-library/GenomeInfoDb/R/GenomeInfoDb
usr/lib/R/site-library/GenomeInfoDb/R/GenomeInfoDb.rdb
usr/lib/R/site-library/GenomeInfoDb/R/GenomeInfoDb.rdx
usr/lib/R/site-library/GenomeInfoDb/doc
usr/lib/R/site-library/GenomeInfoDb/doc/Accept-organism-for-GenomeInfoDb.R
usr/lib/R/site-library/GenomeInfoDb/doc/Accept-organism-for-GenomeInfoDb.Rnw
usr/lib/R/site-library/GenomeInfoDb/doc/Accept-organism-for-GenomeInfoDb.pdf
usr/lib/R/site-library/GenomeInfoDb/doc/GenomeInfoDb.R
usr/lib/R/site-library/GenomeInfoDb/doc/GenomeInfoDb.Rnw
usr/lib/R/site-library/GenomeInfoDb/doc/GenomeInfoDb.pdf
usr/lib/R/site-library/GenomeInfoDb/doc/index.html
usr/lib/R/site-library/GenomeInfoDb/extdata
usr/lib/R/site-library/GenomeInfoDb/extdata/assembly_accessions.rda
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Arabidopsis_thaliana.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Caenorhabditis_elegans.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Canis_familiaris.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Cyanidioschyzon_merolae.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Drosophila_melanogaster.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Homo_sapiens.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Mus_musculus.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Oryza_sativa.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Populus_trichocarpa.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/README
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Rattus_norvegicus.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Saccharomyces_cerevisiae.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/Zea_mays.txt
usr/lib/R/site-library/GenomeInfoDb/extdata/dataFiles/genomeMappingTbl.csv
usr/lib/R/site-library/GenomeInfoDb/help
usr/lib/R/site-library/GenomeInfoDb/help/AnIndex
usr/lib/R/site-library/GenomeInfoDb/help/GenomeInfoDb.rdb
usr/lib/R/site-library/GenomeInfoDb/help/GenomeInfoDb.rdx
usr/lib/R/site-library/GenomeInfoDb/help/aliases.rds
usr/lib/R/site-library/GenomeInfoDb/help/paths.rds
usr/lib/R/site-library/GenomeInfoDb/html
usr/lib/R/site-library/GenomeInfoDb/html/00Index.html
usr/lib/R/site-library/GenomeInfoDb/html/R.css
usr/lib/R/site-library/GenomeInfoDb/registered
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Apis_mellifera.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Arabidopsis_thaliana.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Betacoronavirus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Bos_taurus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Caenorhabditis_elegans.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Callithrix_jacchus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Camponotus_floridanus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Canis_lupus_familiaris.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Chlamydomonas_reinhardtii.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Danio_rerio.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Drosophila_melanogaster.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Drosophila_virilis.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Galleria_mellonella.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Gallus_gallus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Gasterosteus_aculeatus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Harpegnathos_saltator.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Homo_sapiens.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Macaca_fascicularis.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Macaca_mulatta.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Madurella_mycetomatis.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Microtus_ochrogaster.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Monodelphis_domestica.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Mus_musculus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Mustela_putorius_furo.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Pan_paniscus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Pan_troglodytes.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Rattus_norvegicus.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Saccharomyces_cerevisiae.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Sus_scrofa.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Taeniopygia_guttata.R
usr/lib/R/site-library/GenomeInfoDb/registered/NCBI_assemblies/Vitis_vinifera.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/README.TXT
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/apiMel1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/apiMel2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau4.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau7.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau8.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/bosTau9.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/calJac3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/canFam1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/canFam2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/canFam3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/canFam4.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/ce10.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/ce11.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/ce2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/ce4.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/ce6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/danRer10.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/danRer11.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/danRer5.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/danRer6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/danRer7.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/dm1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/dm2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/dm3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/dm6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/eboVir3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/galGal2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/galGal3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/galGal4.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/galGal5.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/galGal6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/gasAcu1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/hg15.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/hg16.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/hg17.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/hg18.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/hg19.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/hg38.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/macFas5.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/mm10.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/mm8.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/mm9.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/monDom5.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/musFur1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panPan1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panPan2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panPan3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panTro1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panTro2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panTro3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panTro4.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panTro5.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/panTro6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rheMac10.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rheMac2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rheMac3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rheMac8.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rn1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rn2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rn3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rn4.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rn5.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/rn6.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/sacCer1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/sacCer2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/sacCer3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/susScr11.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/susScr2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/susScr3.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/taeGut1.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/taeGut2.R
usr/lib/R/site-library/GenomeInfoDb/registered/UCSC_genomes/wuhCor1.R
usr/lib/R/site-library/GenomeInfoDb/unitTests
usr/lib/R/site-library/GenomeInfoDb/unitTests/test_Seqinfo-class.R
usr/lib/R/site-library/GenomeInfoDb/unitTests/test_mapGenomeBuilds.R
usr/lib/R/site-library/GenomeInfoDb/unitTests/test_rankSeqlevels.R
usr/lib/R/site-library/GenomeInfoDb/unitTests/test_seqlevels-wrappers.R
usr/lib/R/site-library/GenomeInfoDb/unitTests/test_seqlevelsStyle.R
usr/lib/R/site-library/GenomeInfoDb/unitTests/test_utils.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-genomeinfodb
usr/share/doc/r-bioc-genomeinfodb/README.test
usr/share/doc/r-bioc-genomeinfodb/changelog.Debian.gz
usr/share/doc/r-bioc-genomeinfodb/copyright