prokka (1.14.6+dfsg-6)

Details

Core information at a glance

Distribution
debian
Origin
debian-forky
Repository
https://deb.debian.org/debian
Codename
forky
Component
main
Source
none
Architecture
s390x
Section
science
Priority
optional
Maintainer
Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
106.5 kB
Size expected
15.2 MB
Size actual
15.2 MB
Size match

Dependencies

Required package dependencies

  • perl:any
  • parallel
  • libbio-perl-perl
  • ncbi-blast+
  • hmmer
  • aragorn
  • prodigal
  • ncbi-tools-bin
  • infernal
  • libswiss-perl
  • libxml-simple-perl
  • default-jre
  • less
  • libbio-searchio-hmmer-perl

Suggested packages

Recommended additional packages

  • None

Description

rapid annotation of prokaryotic genomes

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5fcc66084…088dbdf3
SHA-1acf8decc…06ea492f
SHA-256f22be5b9…478153f7
SHA-512e452b475…efe4836e

Contents

Files and directories included

.
usr
usr/bin
usr/bin/prokka
usr/bin/prokka-biocyc_to_fasta_db
usr/bin/prokka-cdd_to_hmm
usr/bin/prokka-clusters_to_hmm
usr/bin/prokka-genbank_to_fasta_db
usr/bin/prokka-genpept_to_fasta_db
usr/bin/prokka-hamap_to_hmm
usr/bin/prokka-uniprot_to_fasta_db
usr/share
usr/share/doc
usr/share/doc/prokka
usr/share/doc/prokka/NEWS.Debian.gz
usr/share/doc/prokka/README.Debian
usr/share/doc/prokka/README.md.gz
usr/share/doc/prokka/changelog.Debian.gz
usr/share/doc/prokka/changelog.gz
usr/share/doc/prokka/copyright
usr/share/doc/prokka/get-additional-data
usr/share/man
usr/share/man/man1
usr/share/man/man1/prokka-biocyc_to_fasta_db.1.gz
usr/share/man/man1/prokka-cdd_to_hmm.1.gz
usr/share/man/man1/prokka-clusters_to_hmm.1.gz
usr/share/man/man1/prokka-genbank_to_fasta_db.1.gz
usr/share/man/man1/prokka-genpept_to_fasta_db.1.gz
usr/share/man/man1/prokka-hamap_to_hmm.1.gz
usr/share/man/man1/prokka-uniprot_to_fasta_db.1.gz
usr/share/man/man1/prokka.1.gz
usr/share/prokka
usr/share/prokka/db
usr/share/prokka/db/cm
usr/share/prokka/db/cm/Archaea
usr/share/prokka/db/cm/Bacteria
usr/share/prokka/db/cm/README
usr/share/prokka/db/cm/Viruses
usr/share/prokka/db/cm/__build
usr/share/prokka/db/cm/__build/.gitignore
usr/share/prokka/db/cm/__build/Rfam_archaea_14.1.txt
usr/share/prokka/db/cm/__build/Rfam_bacteria_14.1.txt
usr/share/prokka/db/cm/__build/Rfam_viruses_14.1.txt
usr/share/prokka/db/cm/__build/archaea.sql
usr/share/prokka/db/cm/__build/bacteria.sql
usr/share/prokka/db/cm/__build/update.sh
usr/share/prokka/db/cm/__build/viruses.sql
usr/share/prokka/db/genus
usr/share/prokka/db/genus/Enterococcus
usr/share/prokka/db/genus/Escherichia
usr/share/prokka/db/genus/Staphylococcus
usr/share/prokka/db/kingdom
usr/share/prokka/db/kingdom/Archaea
usr/share/prokka/db/kingdom/Archaea/sprot
usr/share/prokka/db/kingdom/Bacteria
usr/share/prokka/db/kingdom/Bacteria/sprot
usr/share/prokka/db/kingdom/Viruses
usr/share/prokka/db/kingdom/Viruses/sprot
var
var/lib
var/lib/prokka
var/lib/prokka/db
var/lib/prokka/db/cm
var/lib/prokka/db/cm/__build
var/lib/prokka/db/genus
var/lib/prokka/db/kingdom
var/lib/prokka/db/kingdom/Archaea
var/lib/prokka/db/kingdom/Bacteria
var/lib/prokka/db/kingdom/Viruses
var/lib/prokka/db/cm/Archaea
var/lib/prokka/db/cm/Bacteria
var/lib/prokka/db/cm/README
var/lib/prokka/db/cm/Viruses
var/lib/prokka/db/cm/__build/.gitignore
var/lib/prokka/db/cm/__build/Rfam_archaea_14.1.txt
var/lib/prokka/db/cm/__build/Rfam_bacteria_14.1.txt
var/lib/prokka/db/cm/__build/Rfam_viruses_14.1.txt
var/lib/prokka/db/cm/__build/archaea.sql
var/lib/prokka/db/cm/__build/bacteria.sql
var/lib/prokka/db/cm/__build/update.sh
var/lib/prokka/db/cm/__build/viruses.sql
var/lib/prokka/db/genus/Enterococcus
var/lib/prokka/db/genus/Escherichia
var/lib/prokka/db/genus/Staphylococcus
var/lib/prokka/db/kingdom/Archaea/sprot
var/lib/prokka/db/kingdom/Bacteria/sprot
var/lib/prokka/db/kingdom/Viruses/sprot