python-pysam-tests (0.23.3+ds-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-forky
- Repository
- https://deb.debian.org/debian
- Codename
- forky
- Component
- main
- Source
- python-pysam
- Architecture
- s390x
- Section
- python
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 2.8 kB
- Size expected
- 1.4 MB
- Size actual
- 1.4 MB
- Size match
Dependencies
Required package dependencies
- None
Suggested packages
Recommended additional packages
- None
Description
interface for the SAM/BAM sequence alignment and mapping format (test data)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 916cf58f…2bc65920 | |
| SHA-1 | 36a96598…6ee7211e | |
| SHA-256 | 25c85458…3a285192 | |
| SHA-512 | 1cf99e18…234b68ec |
Contents
Files and directories included
. usr usr/share usr/share/doc usr/share/doc/python-pysam usr/share/doc/python-pysam/tests usr/share/doc/python-pysam/tests/00README.txt usr/share/doc/python-pysam/tests/AlignedSegment_bench.py usr/share/doc/python-pysam/tests/AlignedSegment_test.py.gz usr/share/doc/python-pysam/tests/AlignmentFileFetchTestUtils.py usr/share/doc/python-pysam/tests/AlignmentFileFetch_bench.py usr/share/doc/python-pysam/tests/AlignmentFileHeader_test.py.gz usr/share/doc/python-pysam/tests/AlignmentFilePileup_bench.py.gz usr/share/doc/python-pysam/tests/AlignmentFilePileup_test.py.gz usr/share/doc/python-pysam/tests/AlignmentFile_bench.py usr/share/doc/python-pysam/tests/AlignmentFile_test.py.gz usr/share/doc/python-pysam/tests/PileupTestUtils.py.gz usr/share/doc/python-pysam/tests/StreamFiledescriptors_test.py usr/share/doc/python-pysam/tests/TestUtils.py.gz usr/share/doc/python-pysam/tests/VariantFileFetchTestUtils.py usr/share/doc/python-pysam/tests/VariantFile_bench.py usr/share/doc/python-pysam/tests/VariantFile_test.py.gz usr/share/doc/python-pysam/tests/VariantRecord_test.py usr/share/doc/python-pysam/tests/_compile_test.pyx usr/share/doc/python-pysam/tests/_compile_test.pyxbld usr/share/doc/python-pysam/tests/_cython_flagstat.pyx usr/share/doc/python-pysam/tests/_cython_flagstat.pyxbld usr/share/doc/python-pysam/tests/cbcf_data usr/share/doc/python-pysam/tests/cbcf_data/Makefile usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf usr/share/doc/python-pysam/tests/cbcf_data/example_vcf40.vcf usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42.vcf usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42_only_header.vcf usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42_withcontigs.vcf usr/share/doc/python-pysam/tests/cbcf_data/example_vcf43.vcf usr/share/doc/python-pysam/tests/cbcf_data/example_vcf43_with_utf8.vcf usr/share/doc/python-pysam/tests/cbcf_data/gnomad.vcf.gz usr/share/doc/python-pysam/tests/cbcf_data/gnomad_fixed.vcf.gz usr/share/doc/python-pysam/tests/cbcf_data/missing_genotypes.vcf usr/share/doc/python-pysam/tests/compile_test.py usr/share/doc/python-pysam/tests/faidx_bench.py usr/share/doc/python-pysam/tests/faidx_test.py.gz usr/share/doc/python-pysam/tests/linking_test.py usr/share/doc/python-pysam/tests/pysam_data usr/share/doc/python-pysam/tests/pysam_data/0example_no_seq_in_header.bam usr/share/doc/python-pysam/tests/pysam_data/0example_no_seq_in_header_null_bytes.bam usr/share/doc/python-pysam/tests/pysam_data/MM-chebi.bam usr/share/doc/python-pysam/tests/pysam_data/MM-chebi.sam usr/share/doc/python-pysam/tests/pysam_data/MM-double.bam usr/share/doc/python-pysam/tests/pysam_data/MM-double.sam usr/share/doc/python-pysam/tests/pysam_data/MM-explicit.bam usr/share/doc/python-pysam/tests/pysam_data/MM-explicit.sam usr/share/doc/python-pysam/tests/pysam_data/MM-multi.bam usr/share/doc/python-pysam/tests/pysam_data/MM-multi.sam usr/share/doc/python-pysam/tests/pysam_data/MM-orient.bam usr/share/doc/python-pysam/tests/pysam_data/MM-orient.sam usr/share/doc/python-pysam/tests/pysam_data/Makefile usr/share/doc/python-pysam/tests/pysam_data/empty.bam usr/share/doc/python-pysam/tests/pysam_data/ex1.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex1.bed usr/share/doc/python-pysam/tests/pysam_data/ex1.fa usr/share/doc/python-pysam/tests/pysam_data/ex1.sam.gz usr/share/doc/python-pysam/tests/pysam_data/ex1.vcf.gz usr/share/doc/python-pysam/tests/pysam_data/ex1.vcf.gz.tbi.gz usr/share/doc/python-pysam/tests/pysam_data/ex10.bam usr/share/doc/python-pysam/tests/pysam_data/ex10.sam usr/share/doc/python-pysam/tests/pysam_data/ex1_csi.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex2.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex2_corrupt.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex2_truncated.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex3.bam usr/share/doc/python-pysam/tests/pysam_data/ex3.sam usr/share/doc/python-pysam/tests/pysam_data/ex4.bam usr/share/doc/python-pysam/tests/pysam_data/ex4.sam usr/share/doc/python-pysam/tests/pysam_data/ex5.bam usr/share/doc/python-pysam/tests/pysam_data/ex5.sam usr/share/doc/python-pysam/tests/pysam_data/ex6.bam usr/share/doc/python-pysam/tests/pysam_data/ex6.sam usr/share/doc/python-pysam/tests/pysam_data/ex7.sam.donottest usr/share/doc/python-pysam/tests/pysam_data/ex8.bam usr/share/doc/python-pysam/tests/pysam_data/ex8.sam usr/share/doc/python-pysam/tests/pysam_data/ex9_fail.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex9_fail.sam.gz usr/share/doc/python-pysam/tests/pysam_data/ex9_nofail.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex9_nofail.sam.gz usr/share/doc/python-pysam/tests/pysam_data/ex_spliced.bam.gz usr/share/doc/python-pysam/tests/pysam_data/ex_spliced.sam.gz usr/share/doc/python-pysam/tests/pysam_data/example_aligned_pairs.bam.gz usr/share/doc/python-pysam/tests/pysam_data/example_aligned_pairs.sam.gz usr/share/doc/python-pysam/tests/pysam_data/example_bai.bam.gz usr/share/doc/python-pysam/tests/pysam_data/example_btag.bam usr/share/doc/python-pysam/tests/pysam_data/example_btag.sam usr/share/doc/python-pysam/tests/pysam_data/example_dash_in_chr.bam usr/share/doc/python-pysam/tests/pysam_data/example_dash_in_chr.sam usr/share/doc/python-pysam/tests/pysam_data/example_empty_header.bam.gz usr/share/doc/python-pysam/tests/pysam_data/example_empty_header.sam.gz usr/share/doc/python-pysam/tests/pysam_data/example_empty_with_header.bam usr/share/doc/python-pysam/tests/pysam_data/example_empty_with_header.sam usr/share/doc/python-pysam/tests/pysam_data/example_reverse_complement.bam usr/share/doc/python-pysam/tests/pysam_data/example_reverse_complement.sam usr/share/doc/python-pysam/tests/pysam_data/example_unmapped_reads_no_sq.bam usr/share/doc/python-pysam/tests/pysam_data/example_unmapped_reads_no_sq.sam usr/share/doc/python-pysam/tests/pysam_data/explicit_index.bam.gz usr/share/doc/python-pysam/tests/pysam_data/faidx_empty_seq.fq usr/share/doc/python-pysam/tests/pysam_data/faidx_ex1.fa.gz usr/share/doc/python-pysam/tests/pysam_data/faidx_ex1.fq.gz usr/share/doc/python-pysam/tests/pysam_data/issue100.bam.gz usr/share/doc/python-pysam/tests/pysam_data/issue100.sam.gz usr/share/doc/python-pysam/tests/pysam_data/rg_with_tab.bam.gz usr/share/doc/python-pysam/tests/pysam_data/rg_with_tab.sam.gz usr/share/doc/python-pysam/tests/pysam_data/softclip.bam usr/share/doc/python-pysam/tests/pysam_data/softclip.sam usr/share/doc/python-pysam/tests/pysam_data/tag_bug.bam usr/share/doc/python-pysam/tests/pysam_data/tag_bug.sam usr/share/doc/python-pysam/tests/pysam_data/test.gtf usr/share/doc/python-pysam/tests/pysam_data/test_mapped_unmapped.bam usr/share/doc/python-pysam/tests/pysam_data/test_mapped_unmapped.sam usr/share/doc/python-pysam/tests/pysam_data/test_query_position.bam usr/share/doc/python-pysam/tests/pysam_data/test_query_position.sam usr/share/doc/python-pysam/tests/pysam_data/test_unaligned.bam usr/share/doc/python-pysam/tests/pysam_data/test_unaligned.sam usr/share/doc/python-pysam/tests/pysam_data/uncompressed.bam.gz usr/share/doc/python-pysam/tests/pysam_data/with_md.bam.gz usr/share/doc/python-pysam/tests/refactoring.txt.gz usr/share/doc/python-pysam/tests/samtools_test.py.gz usr/share/doc/python-pysam/tests/tabix_bench.py.gz usr/share/doc/python-pysam/tests/tabix_data usr/share/doc/python-pysam/tests/tabix_data/Makefile usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz usr/share/doc/python-pysam/tests/tabix_data/example.bed usr/share/doc/python-pysam/tests/tabix_data/example.gff2.gz usr/share/doc/python-pysam/tests/tabix_data/example.gff3.gz usr/share/doc/python-pysam/tests/tabix_data/example.gtf.gz usr/share/doc/python-pysam/tests/tabix_data/example.gtf.gz.tbi usr/share/doc/python-pysam/tests/tabix_data/example.sam.gz usr/share/doc/python-pysam/tests/tabix_data/example.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/example.vcf40 usr/share/doc/python-pysam/tests/tabix_data/example_0v23.bed.gz usr/share/doc/python-pysam/tests/tabix_data/example_0v23.bed.gz.tbi usr/share/doc/python-pysam/tests/tabix_data/example_0v23.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/example_0v23.vcf.gz.tbi usr/share/doc/python-pysam/tests/tabix_data/example_0v26.bed.gz usr/share/doc/python-pysam/tests/tabix_data/example_0v26.bed.gz.tbi usr/share/doc/python-pysam/tests/tabix_data/example_0v26.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/example_0v26.vcf.gz.tbi usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.bed.gz usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.gtf.gz usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.sam.gz usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/example_comments.bed.gz usr/share/doc/python-pysam/tests/tabix_data/example_comments.gtf.gz usr/share/doc/python-pysam/tests/tabix_data/example_comments.sam.gz usr/share/doc/python-pysam/tests/tabix_data/example_comments.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/example_large.bed.gz usr/share/doc/python-pysam/tests/tabix_data/example_unicode.vcf usr/share/doc/python-pysam/tests/tabix_data/fivecolumns.bed usr/share/doc/python-pysam/tests/tabix_data/gtf_toofew_fields.gtf.gz usr/share/doc/python-pysam/tests/tabix_data/gtf_toomany_fields.gtf.gz usr/share/doc/python-pysam/tests/tabix_data/gtf_wrong_fields.gtf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf usr/share/doc/python-pysam/tests/tabix_data/vcf/10.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/11.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/12.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/13.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/15.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/16.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/18.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/2.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/20.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/21.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/22.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/23.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/24.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/3.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/4.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/5.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/6.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/7.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/8.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/9.vcf.gz usr/share/doc/python-pysam/tests/tabix_data/vcf/README.txt usr/share/doc/python-pysam/tests/tabix_data/vcf/issue85.vcf usr/share/doc/python-pysam/tests/tabix_data/vcf/vcf_v42.vcf usr/share/doc/python-pysam/tests/tabix_test.py.gz usr/share/doc/python-pysam/tests/tabixproxies_test.py.gz usr/share/doc/python-pysam/tests/test_samtools_python.py usr/share/doc/python-pysam/tests/typechecking_test.py usr/share/doc/python-pysam-tests usr/share/doc/python-pysam-tests/README.Debian usr/share/doc/python-pysam-tests/changelog.Debian.gz usr/share/doc/python-pysam-tests/copyright usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/python-pysam-tests