python3-bx (0.13.0-2+b1)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-forky
- Repository
- https://deb.debian.org/debian
- Codename
- forky
- Component
- main
- Source
- python-bx (0.13.0-2)
- Architecture
- s390x
- Section
- python
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 5.6 kB
- Size expected
- 952.4 kB
- Size actual
- 952.4 kB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
library to manage genomic data and its alignment
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | b2ec0474…942a5665 | |
| SHA-1 | 9ca1b7b3…376873b7 | |
| SHA-256 | eea30b13…929454d5 | |
| SHA-512 | 05754758…b47544fe |
Contents
Files and directories included
. usr usr/bin usr/bin/aggregate_scores_in_intervals.py usr/bin/align_print_template.py usr/bin/axt_extract_ranges.py usr/bin/axt_to_fasta.py usr/bin/axt_to_lav.py usr/bin/axt_to_maf.py usr/bin/bed_bigwig_profile.py usr/bin/bed_build_windows.py usr/bin/bed_complement.py usr/bin/bed_count_by_interval.py usr/bin/bed_count_overlapping.py usr/bin/bed_coverage.py usr/bin/bed_coverage_by_interval.py usr/bin/bed_diff_basewise_summary.py usr/bin/bed_extend_to.py usr/bin/bed_intersect.py usr/bin/bed_intersect_basewise.py usr/bin/bed_merge_overlapping.py usr/bin/bed_rand_intersect.py usr/bin/bed_subtract_basewise.py usr/bin/bnMapper.py usr/bin/div_snp_table_chr.py usr/bin/find_in_sorted_file.py usr/bin/gene_fourfold_sites.py usr/bin/get_scores_in_intervals.py usr/bin/int_seqs_to_char_strings.py usr/bin/interval_count_intersections.py usr/bin/interval_join.py usr/bin/lav_to_axt.py usr/bin/lav_to_maf.py usr/bin/line_select.py usr/bin/lzop_build_offset_table.py usr/bin/mMK_bitset.py usr/bin/maf_build_index.py usr/bin/maf_chop.py usr/bin/maf_chunk.py usr/bin/maf_col_counts.py usr/bin/maf_col_counts_all.py usr/bin/maf_count.py usr/bin/maf_covered_ranges.py usr/bin/maf_covered_regions.py usr/bin/maf_div_sites.py usr/bin/maf_drop_overlapping.py usr/bin/maf_extract_chrom_ranges.py usr/bin/maf_extract_ranges.py usr/bin/maf_extract_ranges_indexed.py usr/bin/maf_filter.py usr/bin/maf_filter_max_wc.py usr/bin/maf_gap_frequency.py usr/bin/maf_gc_content.py usr/bin/maf_interval_alignibility.py usr/bin/maf_limit_to_species.py usr/bin/maf_mapping_word_frequency.py usr/bin/maf_mask_cpg.py usr/bin/maf_mean_length_ungapped_piece.py usr/bin/maf_percent_columns_matching.py usr/bin/maf_percent_identity.py usr/bin/maf_print_chroms.py usr/bin/maf_print_scores.py usr/bin/maf_randomize.py usr/bin/maf_region_coverage_by_src.py usr/bin/maf_select.py usr/bin/maf_shuffle_columns.py usr/bin/maf_species_in_all_files.py usr/bin/maf_split_by_src.py usr/bin/maf_thread_for_species.py usr/bin/maf_tile.py usr/bin/maf_tile_2.py usr/bin/maf_tile_2bit.py usr/bin/maf_to_axt.py usr/bin/maf_to_concat_fasta.py usr/bin/maf_to_fasta.py usr/bin/maf_to_int_seqs.py usr/bin/maf_translate_chars.py usr/bin/maf_truncate.py usr/bin/maf_word_frequency.py usr/bin/mask_quality.py usr/bin/nib_chrom_intervals_to_fasta.py usr/bin/nib_intervals_to_fasta.py usr/bin/nib_length.py usr/bin/one_field_per_line.py usr/bin/out_to_chain.py usr/bin/prefix_lines.py usr/bin/pretty_table.py usr/bin/qv_to_bqv.py usr/bin/random_lines.py usr/bin/table_add_column.py usr/bin/table_filter.py usr/bin/tfloc_summary.py usr/bin/ucsc_gene_table_to_intervals.py usr/bin/wiggle_to_array_tree.py usr/bin/wiggle_to_binned_array.py usr/bin/wiggle_to_chr_binned_array.py usr/bin/wiggle_to_simple.py usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/bx usr/lib/python3/dist-packages/bx/__init__.py usr/lib/python3/dist-packages/bx/_seqmapping.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/_seqmapping.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align usr/lib/python3/dist-packages/bx/align/__init__.py usr/lib/python3/dist-packages/bx/align/_core.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align/_core.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align/_epo.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align/_epo.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align/axt.py usr/lib/python3/dist-packages/bx/align/core.py usr/lib/python3/dist-packages/bx/align/epo.py usr/lib/python3/dist-packages/bx/align/epo_tests.py usr/lib/python3/dist-packages/bx/align/lav.py usr/lib/python3/dist-packages/bx/align/lav_tests.py usr/lib/python3/dist-packages/bx/align/maf.py usr/lib/python3/dist-packages/bx/align/maf_tests.py usr/lib/python3/dist-packages/bx/align/score.py usr/lib/python3/dist-packages/bx/align/score_tests.py usr/lib/python3/dist-packages/bx/align/sitemask usr/lib/python3/dist-packages/bx/align/sitemask/__init__.py usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align/sitemask/_cpg.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/align/sitemask/core.py usr/lib/python3/dist-packages/bx/align/sitemask/cpg.py usr/lib/python3/dist-packages/bx/align/sitemask/quality.py usr/lib/python3/dist-packages/bx/align/sitemask/sitemask_tests.py usr/lib/python3/dist-packages/bx/align/tools usr/lib/python3/dist-packages/bx/align/tools/__init__.py usr/lib/python3/dist-packages/bx/align/tools/chop.py usr/lib/python3/dist-packages/bx/align/tools/fuse.py usr/lib/python3/dist-packages/bx/align/tools/thread.py usr/lib/python3/dist-packages/bx/align/tools/tile.py usr/lib/python3/dist-packages/bx/arrays usr/lib/python3/dist-packages/bx/arrays/__init__.py usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/arrays/array_tree.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/arrays/array_tree_tests.py usr/lib/python3/dist-packages/bx/arrays/bed.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/arrays/bed.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/arrays/wiggle.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi usr/lib/python3/dist-packages/bx/bbi/__init__.py usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bbi_file.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bigbed_file.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bigwig_file.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bigwig_tests.py usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/bpt_file.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bbi/cirtree_file.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/binned_array.py usr/lib/python3/dist-packages/bx/binned_array_tests.py usr/lib/python3/dist-packages/bx/bitset.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bitset.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/bitset_builders.py usr/lib/python3/dist-packages/bx/bitset_tests.py usr/lib/python3/dist-packages/bx/bitset_utils.py usr/lib/python3/dist-packages/bx/cookbook usr/lib/python3/dist-packages/bx/cookbook/__init__.py usr/lib/python3/dist-packages/bx/cookbook/attribute.py usr/lib/python3/dist-packages/bx/cookbook/doc_optparse.py usr/lib/python3/dist-packages/bx/filter.py usr/lib/python3/dist-packages/bx/gene_reader.py usr/lib/python3/dist-packages/bx/interval_index_file.py usr/lib/python3/dist-packages/bx/interval_index_file_tests.py usr/lib/python3/dist-packages/bx/intervals usr/lib/python3/dist-packages/bx/intervals/__init__.py usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/intervals/cluster.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/intervals/cluster_tests.py usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/intervals/intersection.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/intervals/intersection_tests.py usr/lib/python3/dist-packages/bx/intervals/io.py usr/lib/python3/dist-packages/bx/intervals/operations usr/lib/python3/dist-packages/bx/intervals/operations/__init__.py usr/lib/python3/dist-packages/bx/intervals/operations/base_coverage.py usr/lib/python3/dist-packages/bx/intervals/operations/complement.py usr/lib/python3/dist-packages/bx/intervals/operations/concat.py usr/lib/python3/dist-packages/bx/intervals/operations/coverage.py usr/lib/python3/dist-packages/bx/intervals/operations/find_clusters.py usr/lib/python3/dist-packages/bx/intervals/operations/intersect.py usr/lib/python3/dist-packages/bx/intervals/operations/join.py usr/lib/python3/dist-packages/bx/intervals/operations/merge.py usr/lib/python3/dist-packages/bx/intervals/operations/quicksect.py usr/lib/python3/dist-packages/bx/intervals/operations/subtract.py usr/lib/python3/dist-packages/bx/intervals/random_intervals.py usr/lib/python3/dist-packages/bx/intseq usr/lib/python3/dist-packages/bx/intseq/__init__.py usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/intseq/ngramcount.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/misc usr/lib/python3/dist-packages/bx/misc/__init__.py usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/misc/_seekbzip2.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/misc/bgzf.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/misc/bgzf_tests.py usr/lib/python3/dist-packages/bx/misc/binary_file.py usr/lib/python3/dist-packages/bx/misc/cdb.py usr/lib/python3/dist-packages/bx/misc/cdb_tests.py usr/lib/python3/dist-packages/bx/misc/filecache.py usr/lib/python3/dist-packages/bx/misc/filecache_tests.py usr/lib/python3/dist-packages/bx/misc/readlengths.py usr/lib/python3/dist-packages/bx/misc/seekbzip2.py usr/lib/python3/dist-packages/bx/misc/seekbzip2_tests.py usr/lib/python3/dist-packages/bx/misc/seeklzop.py usr/lib/python3/dist-packages/bx/misc/seeklzop_tests.py usr/lib/python3/dist-packages/bx/motif usr/lib/python3/dist-packages/bx/motif/__init__.py usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/motif/_pwm.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/motif/io usr/lib/python3/dist-packages/bx/motif/io/__init__.py usr/lib/python3/dist-packages/bx/motif/io/transfac.py usr/lib/python3/dist-packages/bx/motif/io/transfac_tests.py usr/lib/python3/dist-packages/bx/motif/logo usr/lib/python3/dist-packages/bx/motif/logo/__init__.py usr/lib/python3/dist-packages/bx/motif/logo/template.ps usr/lib/python3/dist-packages/bx/motif/pwm.py usr/lib/python3/dist-packages/bx/motif/pwm_tests.py usr/lib/python3/dist-packages/bx/phylo usr/lib/python3/dist-packages/bx/phylo/__init__.py usr/lib/python3/dist-packages/bx/phylo/newick.py usr/lib/python3/dist-packages/bx/phylo/newick_tests.py usr/lib/python3/dist-packages/bx/phylo/phast.py usr/lib/python3/dist-packages/bx/phylo/phast_tests.py usr/lib/python3/dist-packages/bx/pwm usr/lib/python3/dist-packages/bx/pwm/__init__.py usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/pwm/_position_weight_matrix.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_pwm.py usr/lib/python3/dist-packages/bx/pwm/bed_score_aligned_string.py usr/lib/python3/dist-packages/bx/pwm/maf_select_motifs.py usr/lib/python3/dist-packages/bx/pwm/position_weight_matrix.py usr/lib/python3/dist-packages/bx/pwm/pwm_score_maf.py usr/lib/python3/dist-packages/bx/pwm/pwm_score_motifs.py usr/lib/python3/dist-packages/bx/pwm/pwm_score_positions.py usr/lib/python3/dist-packages/bx/pwm/pwm_tests.py usr/lib/python3/dist-packages/bx/seq usr/lib/python3/dist-packages/bx/seq/__init__.py usr/lib/python3/dist-packages/bx/seq/_nib.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/seq/_nib.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-313-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/seq/_twobit.cpython-314-s390x-linux-gnu.so usr/lib/python3/dist-packages/bx/seq/core.py usr/lib/python3/dist-packages/bx/seq/fasta.py usr/lib/python3/dist-packages/bx/seq/fasta_tests.py usr/lib/python3/dist-packages/bx/seq/nib.py usr/lib/python3/dist-packages/bx/seq/nib_tests.py usr/lib/python3/dist-packages/bx/seq/qdna.py usr/lib/python3/dist-packages/bx/seq/qdna_tests.py usr/lib/python3/dist-packages/bx/seq/seq.py usr/lib/python3/dist-packages/bx/seq/seq_tests.py usr/lib/python3/dist-packages/bx/seq/twobit.py usr/lib/python3/dist-packages/bx/seq/twobit_tests.py usr/lib/python3/dist-packages/bx/seqmapping.py usr/lib/python3/dist-packages/bx/seqmapping_tests.py usr/lib/python3/dist-packages/bx/tabular usr/lib/python3/dist-packages/bx/tabular/__init__.py usr/lib/python3/dist-packages/bx/tabular/io.py usr/lib/python3/dist-packages/bx/wiggle.py usr/lib/python3/dist-packages/bx/wiggle_tests.py usr/lib/python3/dist-packages/bx_extras usr/lib/python3/dist-packages/bx_extras/__init__.py usr/lib/python3/dist-packages/bx_extras/fpconst.py usr/lib/python3/dist-packages/bx_extras/fpconst_tests.py usr/lib/python3/dist-packages/bx_extras/lrucache.py usr/lib/python3/dist-packages/bx_extras/pstat.py usr/lib/python3/dist-packages/bx_extras/stats.py usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/INSTALLER usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/METADATA usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/WHEEL usr/lib/python3/dist-packages/bx_python-0.13.0.dist-info/top_level.txt usr/share usr/share/doc usr/share/doc/python3-bx usr/share/doc/python3-bx/README.Debian usr/share/doc/python3-bx/changelog.Debian.gz usr/share/doc/python3-bx/changelog.Debian.s390x.gz usr/share/doc/python3-bx/copyright usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/python3-bx