r-cran-susier (0.12.35+dfsg-1)

Details

Core information at a glance

Distribution
debian
Origin
debian-forky
Repository
https://deb.debian.org/debian
Codename
forky
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.9 kB
Size expected
1.8 MB
Size actual
1.8 MB
Size match

Dependencies

Required package dependencies

  • r-base-core (>= 4.2.2.20221110-2)
  • r-api-4.0
  • r-cran-matrix
  • r-cran-matrixstats
  • r-cran-mixsqp
  • r-cran-reshape
  • r-cran-crayon
  • r-cran-ggplot2
  • python3

Suggested packages

Recommended additional packages

  • r-cran-curl
  • r-cran-knitr
  • r-cran-rmarkdown
  • r-cran-cowplot
  • caviar
  • finemap

Description

GNU R sum of single effects linear regression

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5bbbd4745…36ab2f0a
SHA-19677b397…cd4c3c6d
SHA-2566ea0d0ce…8e68ac07
SHA-5129b731cea…a8a946bf

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/susieR
usr/lib/R/site-library/susieR/CITATION
usr/lib/R/site-library/susieR/DESCRIPTION
usr/lib/R/site-library/susieR/INDEX
usr/lib/R/site-library/susieR/Meta
usr/lib/R/site-library/susieR/Meta/Rd.rds
usr/lib/R/site-library/susieR/Meta/data.rds
usr/lib/R/site-library/susieR/Meta/features.rds
usr/lib/R/site-library/susieR/Meta/hsearch.rds
usr/lib/R/site-library/susieR/Meta/links.rds
usr/lib/R/site-library/susieR/Meta/nsInfo.rds
usr/lib/R/site-library/susieR/Meta/package.rds
usr/lib/R/site-library/susieR/Meta/vignette.rds
usr/lib/R/site-library/susieR/NAMESPACE
usr/lib/R/site-library/susieR/R
usr/lib/R/site-library/susieR/R/susieR
usr/lib/R/site-library/susieR/R/susieR.rdb
usr/lib/R/site-library/susieR/R/susieR.rdx
usr/lib/R/site-library/susieR/analysis
usr/lib/R/site-library/susieR/analysis/optimize.Rmd
usr/lib/R/site-library/susieR/analysis/test_susie_auto.Rmd
usr/lib/R/site-library/susieR/analysis/testing.Rmd
usr/lib/R/site-library/susieR/code
usr/lib/R/site-library/susieR/code/caviar.R
usr/lib/R/site-library/susieR/code/compute_ss_memory.R
usr/lib/R/site-library/susieR/code/dap-g.py
usr/lib/R/site-library/susieR/code/finemap.R
usr/lib/R/site-library/susieR/code/finemap_1p4.R
usr/lib/R/site-library/susieR/code/gen_original_results.R
usr/lib/R/site-library/susieR/code/monitor_memory.py
usr/lib/R/site-library/susieR/code/sparse_matrix_strategy.Rmd
usr/lib/R/site-library/susieR/code/susie_memory.R
usr/lib/R/site-library/susieR/code/susie_rss_memory.R
usr/lib/R/site-library/susieR/data
usr/lib/R/site-library/susieR/data/Rdata.rdb
usr/lib/R/site-library/susieR/data/Rdata.rds
usr/lib/R/site-library/susieR/data/Rdata.rdx
usr/lib/R/site-library/susieR/datafiles
usr/lib/R/site-library/susieR/datafiles/N3finemapping.CAVIAR.RData
usr/lib/R/site-library/susieR/datafiles/N3finemapping.DAP.RData
usr/lib/R/site-library/susieR/datafiles/N3finemapping.FINEMAP.RData
usr/lib/R/site-library/susieR/doc
usr/lib/R/site-library/susieR/doc/finemapping.R
usr/lib/R/site-library/susieR/doc/finemapping.Rmd
usr/lib/R/site-library/susieR/doc/finemapping_summary_statistics.R
usr/lib/R/site-library/susieR/doc/finemapping_summary_statistics.Rmd
usr/lib/R/site-library/susieR/doc/index.html
usr/lib/R/site-library/susieR/doc/mwe.R
usr/lib/R/site-library/susieR/doc/mwe.Rmd
usr/lib/R/site-library/susieR/doc/sparse_susie_eval.R
usr/lib/R/site-library/susieR/doc/sparse_susie_eval.Rmd
usr/lib/R/site-library/susieR/doc/susie_refine.R
usr/lib/R/site-library/susieR/doc/susie_refine.Rmd
usr/lib/R/site-library/susieR/doc/susie_rss.R
usr/lib/R/site-library/susieR/doc/susie_rss.Rmd
usr/lib/R/site-library/susieR/doc/susierss_diagnostic.R
usr/lib/R/site-library/susieR/doc/susierss_diagnostic.Rmd
usr/lib/R/site-library/susieR/doc/trend_filtering.R
usr/lib/R/site-library/susieR/doc/trend_filtering.Rmd
usr/lib/R/site-library/susieR/doc/trendfiltering_derivations.Rnw
usr/lib/R/site-library/susieR/doc/trendfiltering_derivations.pdf
usr/lib/R/site-library/susieR/help
usr/lib/R/site-library/susieR/help/AnIndex
usr/lib/R/site-library/susieR/help/aliases.rds
usr/lib/R/site-library/susieR/help/paths.rds
usr/lib/R/site-library/susieR/help/susieR.rdb
usr/lib/R/site-library/susieR/help/susieR.rdx
usr/lib/R/site-library/susieR/html
usr/lib/R/site-library/susieR/html/00Index.html
usr/lib/R/site-library/susieR/html/R.css
usr/lib/R/site-library/susieR/misc
usr/lib/R/site-library/susieR/misc/post-commit.sh
usr/lib/R/site-library/susieR/misc/pre-commit.sh
usr/share
usr/share/doc
usr/share/doc/r-cran-susier
usr/share/doc/r-cran-susier/changelog.Debian.gz
usr/share/doc/r-cran-susier/copyright
usr/share/doc/r-cran-susier/run-unit-test
usr/share/doc/r-cran-susier/tests
usr/share/doc/r-cran-susier/tests/README.md
usr/share/doc/r-cran-susier/tests/testthat
usr/share/doc/r-cran-susier/tests/testthat/ER2_original_res.rds
usr/share/doc/r-cran-susier/tests/testthat/ER2_rss_lambda0_res.rds
usr/share/doc/r-cran-susier/tests/testthat/ER2_rss_lambda1_res.rds
usr/share/doc/r-cran-susier/tests/testthat/Eloglik_original_res.rds
usr/share/doc/r-cran-susier/tests/testthat/Eloglik_rss_lambda0_res.rds
usr/share/doc/r-cran-susier/tests/testthat/Eloglik_rss_lambda1_res.rds
usr/share/doc/r-cran-susier/tests/testthat/SER_original_res.rds
usr/share/doc/r-cran-susier/tests/testthat/SER_rss_lambda0_res.rds
usr/share/doc/r-cran-susier/tests/testthat/SER_rss_lambda1_res.rds
usr/share/doc/r-cran-susier/tests/testthat/est_V_debug.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/helper_testthat.R.gz
usr/share/doc/r-cran-susier/tests/testthat/objective_original_res.rds
usr/share/doc/r-cran-susier/tests/testthat/objective_rss_lambda0_res.rds
usr/share/doc/r-cran-susier/tests/testthat/objective_rss_lambda1_res.rds
usr/share/doc/r-cran-susier/tests/testthat/singleReg_original_res.rds
usr/share/doc/r-cran-susier/tests/testthat/singleReg_rss_lambda0_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/singleReg_rss_lambda1_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/susiefit_original_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/susiefit_original_res2.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/susiefit_original_res3.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/susiefit_original_res4.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/susierssfit_lambda0_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/susierssfit_lambda1_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/test_Eloglik.R
usr/share/doc/r-cran-susier/tests/testthat/test_Eloglik_rss.R
usr/share/doc/r-cran-susier/tests/testthat/test_SER_posterior_e_loglik.R
usr/share/doc/r-cran-susier/tests/testthat/test_SER_posterior_e_loglik_rss.R
usr/share/doc/r-cran-susier/tests/testthat/test_comput_tf.R
usr/share/doc/r-cran-susier/tests/testthat/test_compute_colsds.R
usr/share/doc/r-cran-susier/tests/testthat/test_est_V.R
usr/share/doc/r-cran-susier/tests/testthat/test_get_ER2.R
usr/share/doc/r-cran-susier/tests/testthat/test_get_ER2_rss.R
usr/share/doc/r-cran-susier/tests/testthat/test_get_pip.R
usr/share/doc/r-cran-susier/tests/testthat/test_get_samples.R
usr/share/doc/r-cran-susier/tests/testthat/test_init.R
usr/share/doc/r-cran-susier/tests/testthat/test_intercept_standardize.R
usr/share/doc/r-cran-susier/tests/testthat/test_null_weight.R
usr/share/doc/r-cran-susier/tests/testthat/test_prior_weights.R
usr/share/doc/r-cran-susier/tests/testthat/test_single_effect_regression.R
usr/share/doc/r-cran-susier/tests/testthat/test_single_effect_regression_rss.R
usr/share/doc/r-cran-susier/tests/testthat/test_small_resid.R
usr/share/doc/r-cran-susier/tests/testthat/test_sparse_multiplication.R
usr/share/doc/r-cran-susier/tests/testthat/test_sparse_safe_colScale.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie_XtX_Xty.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie_beta_se.R.gz
usr/share/doc/r-cran-susier/tests/testthat/test_susie_get_cs.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie_get_objective.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie_rss.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie_rss_get_objective.R
usr/share/doc/r-cran-susier/tests/testthat/test_susie_trendfilter.R.gz
usr/share/doc/r-cran-susier/tests/testthat/test_update_each_effect.R
usr/share/doc/r-cran-susier/tests/testthat/test_update_each_effect_rss.R
usr/share/doc/r-cran-susier/tests/testthat/vbupdate_original_res.rds
usr/share/doc/r-cran-susier/tests/testthat/vbupdate_rss_lambda0_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat/vbupdate_rss_lambda1_res.rds.gz
usr/share/doc/r-cran-susier/tests/testthat.R