reapr (1.0.18+dfsg-7+b1)

Details

Core information at a glance

Distribution
debian
Origin
debian-forky
Repository
https://deb.debian.org/debian
Codename
forky
Component
main
Source
reapr (1.0.18+dfsg-7)
Architecture
s390x
Section
science
Priority
optional
Maintainer
Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
994 B
Size expected
198.9 kB
Size actual
198.9 kB
Size match

Dependencies

Required package dependencies

  • libbamtools2.5.3 (>= 2.5.3+dfsg)
  • libc6 (>= 2.38)
  • libgcc-s1 (>= 3.0)
  • libstdc++6 (>= 13.1)
  • libtabixpp0t64 (>= 1.0.0)
  • samtools
  • bamtools
  • smalt
  • r-base
  • snpomatic
  • tabix
  • libfile-copy-link-perl

Suggested packages

Recommended additional packages

  • None

Description

universal tool for genome assembly evaluation

Tags

Package classification tags

biology::nucleic-acids
field::biology
field::biology:bioinformatics

Checksums

Hash values and integrity verification status

TypeActualMatch
MD53fb57214…9400e020
SHA-153ee6dbc…c9e32688
SHA-256b27e6d9e…b7869975
SHA-512937b0b8a…4f953569

Contents

Files and directories included

.
usr
usr/bin
usr/lib
usr/lib/reapr
usr/lib/reapr/bam2fcdEstimate
usr/lib/reapr/bam2fragCov
usr/lib/reapr/bam2insert
usr/lib/reapr/bam2perfect
usr/lib/reapr/fa2gaps
usr/lib/reapr/fa2gc
usr/lib/reapr/make_plots
usr/lib/reapr/n50
usr/lib/reapr/reapr.pl
usr/lib/reapr/scaff2contig
usr/lib/reapr/task_break
usr/lib/reapr/task_facheck.pl
usr/lib/reapr/task_fcdrate
usr/lib/reapr/task_gapresize
usr/lib/reapr/task_perfectfrombam.pl
usr/lib/reapr/task_perfectmap.pl
usr/lib/reapr/task_pipeline.pl
usr/lib/reapr/task_plots.pl
usr/lib/reapr/task_preprocess.pl
usr/lib/reapr/task_score
usr/lib/reapr/task_seqrename.pl
usr/lib/reapr/task_smaltmap.pl
usr/lib/reapr/task_stats
usr/lib/reapr/task_summary.pl
usr/share
usr/share/doc
usr/share/doc/reapr
usr/share/doc/reapr/changelog.Debian.gz
usr/share/doc/reapr/changelog.Debian.s390x.gz
usr/share/doc/reapr/changelog.gz
usr/share/doc/reapr/copyright
usr/share/man
usr/share/man/man1
usr/share/man/man1/reapr-break.1.gz
usr/share/man/man1/reapr-facheck.1.gz
usr/share/man/man1/reapr-gapresize.1.gz
usr/share/man/man1/reapr-perfectfrombam.1.gz
usr/share/man/man1/reapr-perfectmap.1.gz
usr/share/man/man1/reapr-pipeline.1.gz
usr/share/man/man1/reapr-plots.1.gz
usr/share/man/man1/reapr-preprocess.1.gz
usr/share/man/man1/reapr-score.1.gz
usr/share/man/man1/reapr-seqrename.1.gz
usr/share/man/man1/reapr-smaltmap.1.gz
usr/share/man/man1/reapr-stats.1.gz
usr/share/man/man1/reapr-summary.1.gz
usr/share/man/man1/reapr.1.gz
usr/bin/reapr