resfinder-example (4.4.2-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-forky
- Repository
- https://deb.debian.org/debian
- Codename
- forky
- Component
- main
- Source
- resfinder
- Architecture
- s390x
- Section
- science
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 858 B
- Size expected
- 574.9 kB
- Size actual
- 574.9 kB
- Size match
Dependencies
Required package dependencies
- None
Suggested packages
Recommended additional packages
- None
Description
identify acquired antimicrobial resistance genes (example data)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 117d4b6a…fb16ff8e | |
| SHA-1 | 1473b9bd…849152bb | |
| SHA-256 | eaeb3c53…76d96b04 | |
| SHA-512 | fe2a8bd7…c89640ef |
Contents
Files and directories included
. usr usr/share usr/share/doc usr/share/doc/resfinder usr/share/doc/resfinder/examples usr/share/doc/resfinder/examples/data usr/share/doc/resfinder/examples/data/env_var_test_fail.md usr/share/doc/resfinder/examples/data/test_isolate_01.fa.gz usr/share/doc/resfinder/examples/data/test_isolate_01_1.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_01_2.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_02.fa usr/share/doc/resfinder/examples/data/test_isolate_03.fa.gz usr/share/doc/resfinder/examples/data/test_isolate_05.fa.gz usr/share/doc/resfinder/examples/data/test_isolate_05_1.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_05_2.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_09a.fa usr/share/doc/resfinder/examples/data/test_isolate_09a_1.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_09a_2.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_09b.fa usr/share/doc/resfinder/examples/data/test_isolate_09b_1.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_09b_2.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_10.fa usr/share/doc/resfinder/examples/data/test_isolate_11.fa usr/share/doc/resfinder/examples/data/test_isolate_11_1.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_11_2.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_12.fa usr/share/doc/resfinder/examples/data/test_isolate_14.fa usr/share/doc/resfinder/examples/data/test_isolate_14_1.fq.gz usr/share/doc/resfinder/examples/data/test_isolate_14_2.fq.gz usr/share/doc/resfinder/examples/data/wdl_input.tsv usr/share/doc/resfinder/examples/db_pointfinder usr/share/doc/resfinder/examples/db_pointfinder/INSTALL.py.gz usr/share/doc/resfinder/examples/db_pointfinder/README.md.gz usr/share/doc/resfinder/examples/db_pointfinder/VERSION usr/share/doc/resfinder/examples/db_pointfinder/campylobacter usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/23S.fsa usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/campylobacter.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/gyrA.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/gyrA_2.fsa usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/phenotypes.txt usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/resistens-overview.txt usr/share/doc/resfinder/examples/db_pointfinder/campylobacter/rpsL.fsa usr/share/doc/resfinder/examples/db_pointfinder/config usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/enterococcus_faecalis.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/phenotypes.txt usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecalis/resistens-overview.txt usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/enterococcus_faecium.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/pbp5.fsa usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/enterococcus_faecium/resistens-overview.txt usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/16S-rrsB.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/16S-rrsC.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/16S-rrsH.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/23S.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/ampC-promoter-size-53bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/escherichia_coli.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/folP.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/gyrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/parE.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/pmrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/pmrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/resistens-overview.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/escherichia_coli/rpoB.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori/helicobacter_pylori.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori/phenotypes.txt usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori/resistens-overview.txt usr/share/doc/resfinder/examples/db_pointfinder/helicobacter_pylori/rpoB.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/klebsiella usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/acrR.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/gene_accessions.txt usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/gyrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/klebsiella.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/ompK35.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/ompK36.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/ompK37.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/ramR.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/resistens-overview.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/retired_genes usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/retired_genes/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/retired_genes/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/klebsiella/rpsL.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/Rv0678.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/ahpC-promoter-size-180bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/alr.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/drrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/eis-promoter-size-119bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/embA-promoter-size-115bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/embB.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/embC.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/embR.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/ethA-promoter-size-74bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/ethR.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/fabG1-promoter-size-223bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/folC.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/gidB.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/gyrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/idsA2-promoter-size-181bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/inhA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/iniA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/kasA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/katG-promoter-size-107bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/mycobacterium_tuberculosis.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/nuoA-promoter-size-365bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/panD.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/pncA-promoter-size-107bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/resistens-overview.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/ribD.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rplC.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rpoB.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rpoC.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rpsA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rpsL.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rrl.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/rrs.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/thyA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/thyX-promoter-size-259bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/tlyA.fsa usr/share/doc/resfinder/examples/db_pointfinder/mycobacterium_tuberculosis/ubiA.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/16S-rRNA.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/23S-rRNA-a1.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/23S-rRNA-a2.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/23S-rRNA-a3.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/23S-rRNA-a4.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/macAB-promoter-size-225bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/mtrC-promoter-size-174bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/mtrR-promoter-size-66bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/neisseria_gonorrhoeae.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/penA.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/pilQ.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/ponA.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/porB.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/resistens-overview.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/rpsE.fsa usr/share/doc/resfinder/examples/db_pointfinder/neisseria_gonorrhoeae/rpsJ.fsa usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/CRT.fsa usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/DHFR.fsa usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/DHPS.fsa usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/K13.fsa usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/MDR.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/PIP.fsa usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/config usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/phenotypes.txt usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/plasmodium_falciparum.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/plasmodium_falciparum/resistens-overview.txt usr/share/doc/resfinder/examples/db_pointfinder/salmonella usr/share/doc/resfinder/examples/db_pointfinder/salmonella/16S-rrsD.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/salmonella/acrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/salmonella/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/gyrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/parC.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/parE.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/salmonella/pmrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/pmrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/salmonella/resistens-overview.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/salmonella/salmonella.fsa.gz usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/23S.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/RNA_genes.txt usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/dfrB.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/fusA.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/genes.txt usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/grlA.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/grlB.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/gyrA.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/ileS.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/pbp2.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/pbp4-promoter-size-304bp.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/pbp4.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/phenotypes.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/resistens-overview.txt.gz usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/rpoB.fsa usr/share/doc/resfinder/examples/db_pointfinder/staphylococcus_aureus/staphylococcus_aureus.fsa.gz usr/share/doc/resfinder/examples/deprecated usr/share/doc/resfinder/examples/deprecated/functional_tests.py.gz usr/share/doc/resfinder/examples/deprecated/unit_tests.py usr/share/doc/resfinder/examples/resfinder usr/share/doc/resfinder/examples/resfinder/cge usr/share/doc/resfinder/examples/resfinder/cge/output usr/share/doc/resfinder/examples/resfinder/cge/output/test_gene_result.md.gz usr/share/doc/resfinder/examples/resfinder/cge/output/test_phenotype_result.md.gz usr/share/doc/resfinder/examples/resfinder/cge/output/test_seq_variation_result.md.gz usr/share/doc/resfinder/examples/resfinder/cge/output/test_std_results.md.gz usr/share/doc/resfinder/examples/resfinder/cge/phenotype2genotype usr/share/doc/resfinder/examples/resfinder/cge/phenotype2genotype/test_antibiotics.md usr/share/doc/resfinder/examples/resfinder/cge/phenotype2genotype/test_isolate.md.gz usr/share/doc/resfinder/examples/resfinder/cge/test_config.md.gz usr/share/doc/resfinder/examples/resfinder/cge/test_pointfinder.md usr/share/doc/resfinder/examples/resfinder/test_run_resfinder.md usr/share/doc/resfinder/run-unit-test usr/share/doc/resfinder-example usr/share/doc/resfinder-example/changelog.Debian.gz usr/share/doc/resfinder-example/changelog.gz usr/share/doc/resfinder-example/copyright