python3-pbcore (2.1.2+dfsg-13)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-sid
- Repository
- https://deb.debian.org/debian
- Codename
- sid
- Component
- main
- Source
- python-pbcore
- Architecture
- s390x
- Section
- python
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 3.7 kB
- Size expected
- 2.8 MB
- Size actual
- 2.8 MB
- Size match
Description
Python 3 library for processing PacBio data files
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | e5517a8a…597c07df | |
| SHA-1 | d5ee035f…66db30ee | |
| SHA-256 | 24256234…605ae34c | |
| SHA-512 | e633b979…86d925af |
Contents
Files and directories included
. usr usr/bin usr/bin/pbopen usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/pbcore usr/lib/python3/dist-packages/pbcore/__init__.py usr/lib/python3/dist-packages/pbcore/chemistry usr/lib/python3/dist-packages/pbcore/chemistry/__init__.py usr/lib/python3/dist-packages/pbcore/chemistry/chemistry.py usr/lib/python3/dist-packages/pbcore/chemistry/resources usr/lib/python3/dist-packages/pbcore/chemistry/resources/mapping.xml usr/lib/python3/dist-packages/pbcore/data usr/lib/python3/dist-packages/pbcore/data/Fluidigm_human_amplicons.fasta usr/lib/python3/dist-packages/pbcore/data/Fluidigm_human_amplicons.fasta.fai usr/lib/python3/dist-packages/pbcore/data/Fluidigm_human_amplicons_tiny.fasta usr/lib/python3/dist-packages/pbcore/data/__init__.py usr/lib/python3/dist-packages/pbcore/data/barcodes-ed65-450.fasta usr/lib/python3/dist-packages/pbcore/data/barcodes-ed65-450.fasta.fai usr/lib/python3/dist-packages/pbcore/data/blasr-output.m4 usr/lib/python3/dist-packages/pbcore/data/blasr-output.m5 usr/lib/python3/dist-packages/pbcore/data/chemistry.xml usr/lib/python3/dist-packages/pbcore/data/datasets usr/lib/python3/dist-packages/pbcore/data/datasets/CollectionMetadata.xml usr/lib/python3/dist-packages/pbcore/data/datasets/__init__.py usr/lib/python3/dist-packages/pbcore/data/datasets/alignment.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/barcode.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/ccsaligned.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/ccsread.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/contig.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/empty_lambda.aligned.bam usr/lib/python3/dist-packages/pbcore/data/datasets/empty_lambda.aligned.bam.bai usr/lib/python3/dist-packages/pbcore/data/datasets/empty_lambda.aligned.bam.pbi usr/lib/python3/dist-packages/pbcore/data/datasets/fofn.fofn usr/lib/python3/dist-packages/pbcore/data/datasets/lambda.alignmentset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/lambda.referenceset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam usr/lib/python3/dist-packages/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai usr/lib/python3/dist-packages/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi usr/lib/python3/dist-packages/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml usr/lib/python3/dist-packages/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim.alignmentset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.alignmentset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.pbalign.bam usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.reference.fasta usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.referenceset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreads.bam usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim0.subreadset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.alignmentset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.pbalign.bam usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreads.bam usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi usr/lib/python3/dist-packages/pbcore/data/datasets/pbalchemysim1.subreadset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/reference.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/subread.dataset.xml usr/lib/python3/dist-packages/pbcore/data/datasets/subreadSetWithStats.xml usr/lib/python3/dist-packages/pbcore/data/empty.aligned_subreads.bam usr/lib/python3/dist-packages/pbcore/data/empty.aligned_subreads.bam.pbi usr/lib/python3/dist-packages/pbcore/data/empty.ccs.bam usr/lib/python3/dist-packages/pbcore/data/empty.ccs.bam.pbi usr/lib/python3/dist-packages/pbcore/data/empty2.bam usr/lib/python3/dist-packages/pbcore/data/empty2.bam.pbi usr/lib/python3/dist-packages/pbcore/data/lambdaNEB.fa usr/lib/python3/dist-packages/pbcore/data/lambdaNEB.fa.fai usr/lib/python3/dist-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam usr/lib/python3/dist-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai usr/lib/python3/dist-packages/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam usr/lib/python3/dist-packages/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi usr/lib/python3/dist-packages/pbcore/data/variants.gff usr/lib/python3/dist-packages/pbcore/data/weird.fa usr/lib/python3/dist-packages/pbcore/data/weird.fa.fai usr/lib/python3/dist-packages/pbcore/io usr/lib/python3/dist-packages/pbcore/io/FastaIO.py usr/lib/python3/dist-packages/pbcore/io/FastqIO.py usr/lib/python3/dist-packages/pbcore/io/FofnIO.py usr/lib/python3/dist-packages/pbcore/io/GffIO.py usr/lib/python3/dist-packages/pbcore/io/VcfIO.py usr/lib/python3/dist-packages/pbcore/io/__init__.py usr/lib/python3/dist-packages/pbcore/io/_utils.py usr/lib/python3/dist-packages/pbcore/io/align usr/lib/python3/dist-packages/pbcore/io/align/BamAlignment.py usr/lib/python3/dist-packages/pbcore/io/align/BamIO.py usr/lib/python3/dist-packages/pbcore/io/align/BlasrIO.py usr/lib/python3/dist-packages/pbcore/io/align/PacBioBamIndex.py usr/lib/python3/dist-packages/pbcore/io/align/_AlignmentMixin.py usr/lib/python3/dist-packages/pbcore/io/align/_BamSupport.py usr/lib/python3/dist-packages/pbcore/io/align/__init__.py usr/lib/python3/dist-packages/pbcore/io/base.py usr/lib/python3/dist-packages/pbcore/io/dataset usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetErrors.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetIO.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetMembers.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetReader.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetUtils.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetValidator.py usr/lib/python3/dist-packages/pbcore/io/dataset/DataSetWriter.py usr/lib/python3/dist-packages/pbcore/io/dataset/__init__.py usr/lib/python3/dist-packages/pbcore/io/dataset/run_split.py usr/lib/python3/dist-packages/pbcore/io/dataset/utils.py usr/lib/python3/dist-packages/pbcore/io/opener.py usr/lib/python3/dist-packages/pbcore/model usr/lib/python3/dist-packages/pbcore/model/__init__.py usr/lib/python3/dist-packages/pbcore/model/baseRegions.py usr/lib/python3/dist-packages/pbcore/sequence.py usr/lib/python3/dist-packages/pbcore/util usr/lib/python3/dist-packages/pbcore/util/ToolRunner.py usr/lib/python3/dist-packages/pbcore/util/__init__.py usr/lib/python3/dist-packages/pbcore/util/decorators.py usr/lib/python3/dist-packages/pbcore/util/statistics.py usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/PKG-INFO usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/dependency_links.txt usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/entry_points.txt usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/not-zip-safe usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/requires.txt usr/lib/python3/dist-packages/pbcore-2.2.0.egg-info/top_level.txt usr/share usr/share/doc usr/share/doc/python3-pbcore usr/share/doc/python3-pbcore/README.Debian usr/share/doc/python3-pbcore/README.md usr/share/doc/python3-pbcore/changelog.Debian.gz usr/share/doc/python3-pbcore/changelog.gz usr/share/doc/python3-pbcore/copyright usr/share/man usr/share/man/man1 usr/share/man/man1/pbopen.1.gz