python3-pychopper (2.7.10-1)

Details

Core information at a glance

Distribution: debian
Origin: debian-sid
Repository: https://deb.debian.org/debian
Codename: sid
Component: main
Source: pychopper
Architecture: s390x
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 405 B
Size expected: 137 kB
Size actual: 137 kB
Size match

Dependencies

Required package dependencies

python3-biopython
python3-matplotlib
python3-numpy
python3-pandas
python3-parasail
python3-pysam
python3-pytest
python3-tqdm
python3:any

Suggested packages

Recommended additional packages

None

Description

identify, orient and trim full-length Nanopore cDNA reads

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	450b7263…95312e99	450b7263…95312e99
SHA-1	Not provided	e65fcb89…9f4fee46
SHA-256	52549e35…efd909b1	52549e35…efd909b1
SHA-512	Not provided	556a4eb8…2355b6e7

Files and directories included

.
usr
usr/bin
usr/bin/pychopper
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/pychopper
usr/lib/python3/dist-packages/pychopper/__init__.py
usr/lib/python3/dist-packages/pychopper/alignment_hits.py
usr/lib/python3/dist-packages/pychopper/chopper.py
usr/lib/python3/dist-packages/pychopper/common_structures.py
usr/lib/python3/dist-packages/pychopper/edlib_backend.py
usr/lib/python3/dist-packages/pychopper/hmmer_backend.py
usr/lib/python3/dist-packages/pychopper/parasail_backend.py
usr/lib/python3/dist-packages/pychopper/phmm_data
usr/lib/python3/dist-packages/pychopper/phmm_data/PCS110_primers.hmm
usr/lib/python3/dist-packages/pychopper/phmm_data/PCS110_primers.hmm.h3f
usr/lib/python3/dist-packages/pychopper/phmm_data/PCS110_primers.hmm.h3i
usr/lib/python3/dist-packages/pychopper/phmm_data/PCS110_primers.hmm.h3m
usr/lib/python3/dist-packages/pychopper/phmm_data/PCS110_primers.hmm.h3p
usr/lib/python3/dist-packages/pychopper/phmm_data/__init__.py
usr/lib/python3/dist-packages/pychopper/phmm_data/cDNA_SSP_VNP.hmm
usr/lib/python3/dist-packages/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3f
usr/lib/python3/dist-packages/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3i
usr/lib/python3/dist-packages/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3m
usr/lib/python3/dist-packages/pychopper/phmm_data/cDNA_SSP_VNP.hmm.h3p
usr/lib/python3/dist-packages/pychopper/primer_data
usr/lib/python3/dist-packages/pychopper/primer_data/LSK114_primers.fas
usr/lib/python3/dist-packages/pychopper/primer_data/PCS110_primers.fas
usr/lib/python3/dist-packages/pychopper/primer_data/PCS111_primers.fas
usr/lib/python3/dist-packages/pychopper/primer_data/__init__.py
usr/lib/python3/dist-packages/pychopper/primer_data/cDNA_SSP_VNP.fas
usr/lib/python3/dist-packages/pychopper/report.py
usr/lib/python3/dist-packages/pychopper/scripts
usr/lib/python3/dist-packages/pychopper/scripts/__init__.py
usr/lib/python3/dist-packages/pychopper/scripts/pychopper
usr/lib/python3/dist-packages/pychopper/scripts/pychopper.py
usr/lib/python3/dist-packages/pychopper/seq_utils.py
usr/lib/python3/dist-packages/pychopper/tests
usr/lib/python3/dist-packages/pychopper/tests/__init__.py
usr/lib/python3/dist-packages/pychopper/tests/data
usr/lib/python3/dist-packages/pychopper/tests/data/PCS111_umi_test_reads.fastq.gz
usr/lib/python3/dist-packages/pychopper/tests/data/PCS111_umi_test_reads_expected.fastq
usr/lib/python3/dist-packages/pychopper/tests/data/barcodes.fas
usr/lib/python3/dist-packages/pychopper/tests/data/expected_output.fas
usr/lib/python3/dist-packages/pychopper/tests/data/ref.fas.gz
usr/lib/python3/dist-packages/pychopper/tests/data/ref.fq.gz
usr/lib/python3/dist-packages/pychopper/tests/test_detector.py
usr/lib/python3/dist-packages/pychopper/tests/test_regression_simple.py
usr/lib/python3/dist-packages/pychopper/utils.py
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info/PKG-INFO
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info/dependency_links.txt
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info/entry_points.txt
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info/not-zip-safe
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info/requires.txt
usr/lib/python3/dist-packages/pychopper-2.7.10.egg-info/top_level.txt
usr/share
usr/share/doc
usr/share/doc/python3-pychopper
usr/share/doc/python3-pychopper/changelog.Debian.gz
usr/share/doc/python3-pychopper/changelog.gz
usr/share/doc/python3-pychopper/copyright
usr/share/man
usr/share/man/man1
usr/share/man/man1/pychopper.1.gz