r-bioc-biostrings (2.74.1+dfsg-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
14.3 kB
Size expected
13.4 MB
Size actual
13.4 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-biocgenerics (>= 0.37.0)
  • r-bioc-s4vectors (>= 0.27.12)
  • r-bioc-iranges (>= 2.31.2)
  • r-bioc-xvector (>= 0.37.1)
  • r-bioc-genomeinfodb
  • r-cran-crayon
  • libc6 (>= 2.7)

Suggested packages

Recommended additional packages

  • r-bioc-pwalign
  • r-bioc-bsgenome (>= 1.13.14)
  • r-bioc-genomicfeatures (>= 1.3.14)
  • r-bioc-affy (>= 1.41.3)
  • r-cran-runit
  • r-bioc-biocstyle
  • r-cran-knitr
  • r-cran-testthat (>= 3.0.0)
  • r-cran-covr

Description

GNU R string objects representing biological sequences

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD55e295cf2…3ecd8e89
SHA-17e4f6ae5…6ee0324b
SHA-256530271a4…437c2757
SHA-5123aee8795…eae7fc1b

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/Biostrings
usr/lib/R/site-library/Biostrings/DESCRIPTION
usr/lib/R/site-library/Biostrings/INDEX
usr/lib/R/site-library/Biostrings/Meta
usr/lib/R/site-library/Biostrings/Meta/Rd.rds
usr/lib/R/site-library/Biostrings/Meta/data.rds
usr/lib/R/site-library/Biostrings/Meta/features.rds
usr/lib/R/site-library/Biostrings/Meta/hsearch.rds
usr/lib/R/site-library/Biostrings/Meta/links.rds
usr/lib/R/site-library/Biostrings/Meta/nsInfo.rds
usr/lib/R/site-library/Biostrings/Meta/package.rds
usr/lib/R/site-library/Biostrings/Meta/vignette.rds
usr/lib/R/site-library/Biostrings/NAMESPACE
usr/lib/R/site-library/Biostrings/NEWS
usr/lib/R/site-library/Biostrings/R
usr/lib/R/site-library/Biostrings/R/Biostrings
usr/lib/R/site-library/Biostrings/R/Biostrings.rdb
usr/lib/R/site-library/Biostrings/R/Biostrings.rdx
usr/lib/R/site-library/Biostrings/data
usr/lib/R/site-library/Biostrings/data/BLOSUM100.rda
usr/lib/R/site-library/Biostrings/data/BLOSUM45.rda
usr/lib/R/site-library/Biostrings/data/BLOSUM50.rda
usr/lib/R/site-library/Biostrings/data/BLOSUM62.rda
usr/lib/R/site-library/Biostrings/data/BLOSUM80.rda
usr/lib/R/site-library/Biostrings/data/HNF4alpha.rda
usr/lib/R/site-library/Biostrings/data/PAM120.rda
usr/lib/R/site-library/Biostrings/data/PAM250.rda
usr/lib/R/site-library/Biostrings/data/PAM30.rda
usr/lib/R/site-library/Biostrings/data/PAM40.rda
usr/lib/R/site-library/Biostrings/data/PAM70.rda
usr/lib/R/site-library/Biostrings/data/yeastSEQCHR1.rda
usr/lib/R/site-library/Biostrings/doc
usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.R
usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.Rnw
usr/lib/R/site-library/Biostrings/doc/Biostrings2Classes.pdf
usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.Rnw
usr/lib/R/site-library/Biostrings/doc/BiostringsQuickOverview.pdf
usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.R
usr/lib/R/site-library/Biostrings/doc/MultipleAlignments.Rmd
usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.Rnw
usr/lib/R/site-library/Biostrings/doc/PairwiseAlignments.pdf
usr/lib/R/site-library/Biostrings/doc/index.html
usr/lib/R/site-library/Biostrings/doc/matchprobes.R
usr/lib/R/site-library/Biostrings/doc/matchprobes.Rmd
usr/lib/R/site-library/Biostrings/extdata
usr/lib/R/site-library/Biostrings/extdata/Phylip.txt
usr/lib/R/site-library/Biostrings/extdata/README
usr/lib/R/site-library/Biostrings/extdata/Sc.fa
usr/lib/R/site-library/Biostrings/extdata/Sp.fa
usr/lib/R/site-library/Biostrings/extdata/dm3_upstream2000.fa.gz
usr/lib/R/site-library/Biostrings/extdata/fastaEx.fa
usr/lib/R/site-library/Biostrings/extdata/hg18chr8_gap.txt
usr/lib/R/site-library/Biostrings/extdata/hg18chrY_gap.txt
usr/lib/R/site-library/Biostrings/extdata/msx2_mRNA.aln
usr/lib/R/site-library/Biostrings/extdata/s_1_sequence.txt
usr/lib/R/site-library/Biostrings/extdata/someORF.fa
usr/lib/R/site-library/Biostrings/extdata/someORF.fa.gz
usr/lib/R/site-library/Biostrings/help
usr/lib/R/site-library/Biostrings/help/AnIndex
usr/lib/R/site-library/Biostrings/help/Biostrings.rdb
usr/lib/R/site-library/Biostrings/help/Biostrings.rdx
usr/lib/R/site-library/Biostrings/help/aliases.rds
usr/lib/R/site-library/Biostrings/help/paths.rds
usr/lib/R/site-library/Biostrings/html
usr/lib/R/site-library/Biostrings/html/00Index.html
usr/lib/R/site-library/Biostrings/html/R.css
usr/lib/R/site-library/Biostrings/include
usr/lib/R/site-library/Biostrings/include/Biostrings_defines.h
usr/lib/R/site-library/Biostrings/include/Biostrings_interface.h
usr/lib/R/site-library/Biostrings/include/_Biostrings_stubs.c
usr/lib/R/site-library/Biostrings/libs
usr/lib/R/site-library/Biostrings/libs/Biostrings.so
usr/lib/R/site-library/Biostrings/unitTests
usr/lib/R/site-library/Biostrings/unitTests/test_MultipleAlignment.R
usr/lib/R/site-library/Biostrings/unitTests/test_XString.R
usr/lib/R/site-library/Biostrings/unitTests/test_matchDNAPattern.R.FIXME
usr/lib/R/site-library/Biostrings/unitTests/test_seqinfo-methods.R
usr/lib/R/site-library/Biostrings/unitTests/test_twoWayAlphabetFrequency.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-biostrings
usr/share/doc/r-bioc-biostrings/changelog.Debian.gz
usr/share/doc/r-bioc-biostrings/copyright