r-bioc-bsseq (1.42.0+dfsg-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
3.6 kB
Size expected
3.1 MB
Size actual
3.1 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-biocgenerics
  • r-bioc-genomicranges (>= 1.41.5)
  • r-bioc-summarizedexperiment (>= 1.19.5)
  • r-bioc-iranges (>= 2.23.9)
  • r-bioc-genomeinfodb
  • r-cran-scales
  • r-bioc-biobase
  • r-cran-locfit
  • r-cran-gtools
  • r-cran-data.table (>= 1.11.8)
  • r-bioc-s4vectors (>= 0.27.12)
  • r-cran-r.utils (>= 2.0.0)
  • r-bioc-delayedmatrixstats (>= 1.5.2)
  • r-cran-permute
  • r-bioc-limma
  • r-bioc-delayedarray (>= 0.15.16)
  • r-cran-rcpp
  • r-bioc-biocparallel
  • r-bioc-bsgenome
  • r-bioc-biostrings
  • r-bioc-hdf5array (>= 1.19.11)
  • r-bioc-rhdf5
  • r-bioc-beachmat
  • libc6 (>= 2.11)
  • libgcc-s1 (>= 3.0)
  • libstdc++6 (>= 14)

Suggested packages

Recommended additional packages

  • r-cran-testthat
  • r-bioc-biocstyle
  • r-cran-rmarkdown
  • r-cran-knitr
  • r-cran-matrix
  • r-cran-doparallel
  • r-bioc-rtracklayer
  • r-bioc-beachmat (>= 1.5.2)
  • r-cran-batchtools

Description

Bioconductor analyze, manage and store bisulfite sequencing data

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD556145b26…6a33a533
SHA-17c2b067c…59fe06c3
SHA-2569b6db42e…4483fa4f
SHA-5123b971d8e…7c38bd97

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/bsseq
usr/lib/R/site-library/bsseq/CITATION
usr/lib/R/site-library/bsseq/DESCRIPTION
usr/lib/R/site-library/bsseq/INDEX
usr/lib/R/site-library/bsseq/Meta
usr/lib/R/site-library/bsseq/Meta/Rd.rds
usr/lib/R/site-library/bsseq/Meta/data.rds
usr/lib/R/site-library/bsseq/Meta/features.rds
usr/lib/R/site-library/bsseq/Meta/hsearch.rds
usr/lib/R/site-library/bsseq/Meta/links.rds
usr/lib/R/site-library/bsseq/Meta/nsInfo.rds
usr/lib/R/site-library/bsseq/Meta/package.rds
usr/lib/R/site-library/bsseq/Meta/vignette.rds
usr/lib/R/site-library/bsseq/NAMESPACE
usr/lib/R/site-library/bsseq/NEWS.Rd
usr/lib/R/site-library/bsseq/R
usr/lib/R/site-library/bsseq/R/bsseq
usr/lib/R/site-library/bsseq/R/bsseq.rdb
usr/lib/R/site-library/bsseq/R/bsseq.rdx
usr/lib/R/site-library/bsseq/data
usr/lib/R/site-library/bsseq/data/BS.chr22.rda
usr/lib/R/site-library/bsseq/data/datalist
usr/lib/R/site-library/bsseq/doc
usr/lib/R/site-library/bsseq/doc/bsseq.R
usr/lib/R/site-library/bsseq/doc/bsseq.Rmd
usr/lib/R/site-library/bsseq/doc/bsseq_analysis.R
usr/lib/R/site-library/bsseq/doc/bsseq_analysis.Rmd
usr/lib/R/site-library/bsseq/doc/index.html
usr/lib/R/site-library/bsseq/extdata
usr/lib/R/site-library/bsseq/extdata/modbam2bed
usr/lib/R/site-library/bsseq/extdata/modbam2bed/ctr1.chr10.chr11.bed.gz
usr/lib/R/site-library/bsseq/extdata/modbam2bed/ctr2.chr10.chr11.bed.gz
usr/lib/R/site-library/bsseq/extdata/modbam2bed/ctr3.chr10.chr11.bed.gz
usr/lib/R/site-library/bsseq/extdata/modbam2bed/tret1.chr10.chr11.bed.gz
usr/lib/R/site-library/bsseq/extdata/modbam2bed/tret2.chr10.chr11.bed.gz
usr/lib/R/site-library/bsseq/extdata/modbam2bed/tret3.chr10.chr11.bed.gz
usr/lib/R/site-library/bsseq/extdata/modkit
usr/lib/R/site-library/bsseq/extdata/modkit/Hypo1.first50Bed.txt
usr/lib/R/site-library/bsseq/extdata/modkit/chr21.chr22.HG002.top1000.bed.gz
usr/lib/R/site-library/bsseq/extdata/test_data.cytosineReport.gz
usr/lib/R/site-library/bsseq/extdata/test_data.fastq_bismark.bismark.cov.gz
usr/lib/R/site-library/bsseq/help
usr/lib/R/site-library/bsseq/help/AnIndex
usr/lib/R/site-library/bsseq/help/aliases.rds
usr/lib/R/site-library/bsseq/help/bsseq.rdb
usr/lib/R/site-library/bsseq/help/bsseq.rdx
usr/lib/R/site-library/bsseq/help/paths.rds
usr/lib/R/site-library/bsseq/html
usr/lib/R/site-library/bsseq/html/00Index.html
usr/lib/R/site-library/bsseq/html/R.css
usr/lib/R/site-library/bsseq/libs
usr/lib/R/site-library/bsseq/libs/bsseq.so
usr/lib/R/site-library/bsseq/scripts
usr/lib/R/site-library/bsseq/scripts/get_BS.chr22.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-bsseq
usr/share/doc/r-bioc-bsseq/changelog.Debian.gz
usr/share/doc/r-bioc-bsseq/copyright