r-bioc-cummerbund (2.48.0-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
9.3 kB
Size expected
2.9 MB
Size actual
2.9 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-biocgenerics (>= 0.3.2)
  • r-cran-rsqlite
  • r-cran-ggplot2
  • r-cran-reshape2
  • r-cran-fastcluster
  • r-bioc-rtracklayer
  • r-bioc-gviz
  • r-cran-plyr
  • r-bioc-s4vectors (>= 0.9.25)
  • r-bioc-biobase

Suggested packages

Recommended additional packages

  • r-cran-cluster
  • r-cran-stringr
  • r-bioc-genomicfeatures
  • r-bioc-genomicranges
  • r-cran-rjson

Description

tool for analysis of Cufflinks RNA-Seq output

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5786244c0…9c9198e3
SHA-19b86e2fd…6e373c2b
SHA-25697be7042…5c9984ed
SHA-5127dc05379…3930342c

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/cummeRbund
usr/lib/R/site-library/cummeRbund/DESCRIPTION
usr/lib/R/site-library/cummeRbund/INDEX
usr/lib/R/site-library/cummeRbund/Meta
usr/lib/R/site-library/cummeRbund/Meta/Rd.rds
usr/lib/R/site-library/cummeRbund/Meta/data.rds
usr/lib/R/site-library/cummeRbund/Meta/features.rds
usr/lib/R/site-library/cummeRbund/Meta/hsearch.rds
usr/lib/R/site-library/cummeRbund/Meta/links.rds
usr/lib/R/site-library/cummeRbund/Meta/nsInfo.rds
usr/lib/R/site-library/cummeRbund/Meta/package.rds
usr/lib/R/site-library/cummeRbund/Meta/vignette.rds
usr/lib/R/site-library/cummeRbund/NAMESPACE
usr/lib/R/site-library/cummeRbund/NEWS
usr/lib/R/site-library/cummeRbund/R
usr/lib/R/site-library/cummeRbund/R/cummeRbund
usr/lib/R/site-library/cummeRbund/R/cummeRbund.rdb
usr/lib/R/site-library/cummeRbund/R/cummeRbund.rdx
usr/lib/R/site-library/cummeRbund/data
usr/lib/R/site-library/cummeRbund/data/sampleData.RData
usr/lib/R/site-library/cummeRbund/data/sampleData.rda
usr/lib/R/site-library/cummeRbund/doc
usr/lib/R/site-library/cummeRbund/doc/cummeRbund-example-workflow.R
usr/lib/R/site-library/cummeRbund/doc/cummeRbund-example-workflow.Rnw
usr/lib/R/site-library/cummeRbund/doc/cummeRbund-example-workflow.pdf
usr/lib/R/site-library/cummeRbund/doc/cummeRbund-manual.R
usr/lib/R/site-library/cummeRbund/doc/cummeRbund-manual.Rnw
usr/lib/R/site-library/cummeRbund/doc/cummeRbund-manual.pdf
usr/lib/R/site-library/cummeRbund/doc/index.html
usr/lib/R/site-library/cummeRbund/extdata
usr/lib/R/site-library/cummeRbund/extdata/cds.count_tracking
usr/lib/R/site-library/cummeRbund/extdata/cds.diff
usr/lib/R/site-library/cummeRbund/extdata/cds.fpkm_tracking
usr/lib/R/site-library/cummeRbund/extdata/cds.read_group_tracking
usr/lib/R/site-library/cummeRbund/extdata/cds_exp.diff
usr/lib/R/site-library/cummeRbund/extdata/chr1_snippet.gtf
usr/lib/R/site-library/cummeRbund/extdata/cuffData_schema.sql
usr/lib/R/site-library/cummeRbund/extdata/gene_exp.diff
usr/lib/R/site-library/cummeRbund/extdata/genes.count_tracking
usr/lib/R/site-library/cummeRbund/extdata/genes.fpkm_tracking
usr/lib/R/site-library/cummeRbund/extdata/genes.read_group_tracking
usr/lib/R/site-library/cummeRbund/extdata/isoform_exp.diff
usr/lib/R/site-library/cummeRbund/extdata/isoforms.count_tracking
usr/lib/R/site-library/cummeRbund/extdata/isoforms.fpkm_tracking
usr/lib/R/site-library/cummeRbund/extdata/isoforms.read_group_tracking
usr/lib/R/site-library/cummeRbund/extdata/promoters.diff
usr/lib/R/site-library/cummeRbund/extdata/read_groups.info
usr/lib/R/site-library/cummeRbund/extdata/run.info
usr/lib/R/site-library/cummeRbund/extdata/splicing.diff
usr/lib/R/site-library/cummeRbund/extdata/tss_group_exp.diff
usr/lib/R/site-library/cummeRbund/extdata/tss_groups.count_tracking
usr/lib/R/site-library/cummeRbund/extdata/tss_groups.fpkm_tracking
usr/lib/R/site-library/cummeRbund/extdata/tss_groups.read_group_tracking
usr/lib/R/site-library/cummeRbund/help
usr/lib/R/site-library/cummeRbund/help/AnIndex
usr/lib/R/site-library/cummeRbund/help/aliases.rds
usr/lib/R/site-library/cummeRbund/help/cummeRbund.rdb
usr/lib/R/site-library/cummeRbund/help/cummeRbund.rdx
usr/lib/R/site-library/cummeRbund/help/paths.rds
usr/lib/R/site-library/cummeRbund/html
usr/lib/R/site-library/cummeRbund/html/00Index.html
usr/lib/R/site-library/cummeRbund/html/R.css
usr/lib/R/site-library/cummeRbund/reports
usr/lib/R/site-library/cummeRbund/reports/runReport.Rmd
usr/lib/R/site-library/cummeRbund/reports/styles
usr/lib/R/site-library/cummeRbund/reports/styles/report_style.css
usr/share
usr/share/doc
usr/share/doc/r-bioc-cummerbund
usr/share/doc/r-bioc-cummerbund/changelog.Debian.gz
usr/share/doc/r-bioc-cummerbund/copyright