r-bioc-fishpond (2.12.0+ds-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
3.1 kB
Size expected
1.7 MB
Size actual
1.7 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-cran-abind
  • r-cran-gtools
  • r-bioc-qvalue
  • r-bioc-s4vectors
  • r-bioc-iranges
  • r-bioc-summarizedexperiment
  • r-bioc-genomicranges
  • r-cran-matrixstats
  • r-cran-svmisc
  • r-cran-matrix
  • r-bioc-singlecellexperiment
  • r-cran-jsonlite

Suggested packages

Recommended additional packages

  • r-cran-testthat
  • r-cran-knitr
  • r-cran-rmarkdown
  • r-bioc-tximeta
  • r-bioc-org.hs.eg.db
  • r-cran-samr
  • r-bioc-deseq2
  • r-bioc-tximportdata
  • r-bioc-limma
  • r-bioc-ensembldb
  • r-bioc-genomicfeatures
  • r-bioc-annotationdbi
  • r-cran-pheatmap
  • r-bioc-gviz
  • r-bioc-genomeinfodb
  • r-cran-data.table

Description

Differential transcript and gene expression with inferential replicates

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD54fe3db66…b7f1b5bb
SHA-1a6193007…cae3e913
SHA-256567d6048…cb58a4a0
SHA-51291e4cded…76a4575e

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/fishpond
usr/lib/R/site-library/fishpond/CITATION
usr/lib/R/site-library/fishpond/DESCRIPTION
usr/lib/R/site-library/fishpond/INDEX
usr/lib/R/site-library/fishpond/Meta
usr/lib/R/site-library/fishpond/Meta/Rd.rds
usr/lib/R/site-library/fishpond/Meta/features.rds
usr/lib/R/site-library/fishpond/Meta/hsearch.rds
usr/lib/R/site-library/fishpond/Meta/links.rds
usr/lib/R/site-library/fishpond/Meta/nsInfo.rds
usr/lib/R/site-library/fishpond/Meta/package.rds
usr/lib/R/site-library/fishpond/Meta/vignette.rds
usr/lib/R/site-library/fishpond/NAMESPACE
usr/lib/R/site-library/fishpond/NEWS.md
usr/lib/R/site-library/fishpond/R
usr/lib/R/site-library/fishpond/R/fishpond
usr/lib/R/site-library/fishpond/R/fishpond.rdb
usr/lib/R/site-library/fishpond/R/fishpond.rdx
usr/lib/R/site-library/fishpond/doc
usr/lib/R/site-library/fishpond/doc/allelic.R
usr/lib/R/site-library/fishpond/doc/allelic.Rmd
usr/lib/R/site-library/fishpond/doc/allelic.html
usr/lib/R/site-library/fishpond/doc/index.html
usr/lib/R/site-library/fishpond/doc/swish.R
usr/lib/R/site-library/fishpond/doc/swish.Rmd
usr/lib/R/site-library/fishpond/extdata
usr/lib/R/site-library/fishpond/extdata/Snakefile
usr/lib/R/site-library/fishpond/extdata/alevin
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic/alevin
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic/alevin/quants_mat.mtx
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic/alevin/quants_mat_cols.txt
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic/alevin/quants_mat_rows.txt
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic/example-dat.csv
usr/lib/R/site-library/fishpond/extdata/alevin/example-quants/fry-usa-basic/meta_info.json
usr/lib/R/site-library/fishpond/extdata/animation-code.R
usr/lib/R/site-library/fishpond/help
usr/lib/R/site-library/fishpond/help/AnIndex
usr/lib/R/site-library/fishpond/help/aliases.rds
usr/lib/R/site-library/fishpond/help/figures
usr/lib/R/site-library/fishpond/help/figures/fishpond.png
usr/lib/R/site-library/fishpond/help/figures/plotInfReps.png
usr/lib/R/site-library/fishpond/help/fishpond.rdb
usr/lib/R/site-library/fishpond/help/fishpond.rdx
usr/lib/R/site-library/fishpond/help/paths.rds
usr/lib/R/site-library/fishpond/html
usr/lib/R/site-library/fishpond/html/00Index.html
usr/lib/R/site-library/fishpond/html/R.css
usr/lib/R/site-library/fishpond/script
usr/lib/R/site-library/fishpond/script/timing.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-fishpond
usr/share/doc/r-bioc-fishpond/changelog.Debian.gz
usr/share/doc/r-bioc-fishpond/copyright