r-bioc-genomicalignments (1.42.0-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
3.4 kB
Size expected
2.2 MB
Size actual
2.2 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-biocgenerics (>= 0.37.0)
  • r-bioc-s4vectors (>= 0.27.12)
  • r-bioc-iranges (>= 2.23.9)
  • r-bioc-genomeinfodb (>= 1.13.1)
  • r-bioc-genomicranges (>= 1.55.3)
  • r-bioc-summarizedexperiment (>= 1.9.13)
  • r-bioc-biostrings (>= 2.55.7)
  • r-bioc-rsamtools (>= 1.31.2)
  • r-bioc-biocparallel
  • libc6 (>= 2.4)

Suggested packages

Recommended additional packages

  • r-bioc-shortread
  • r-bioc-rtracklayer
  • r-bioc-bsgenome
  • r-bioc-genomicfeatures
  • r-bioc-deseq2
  • r-bioc-edger
  • r-cran-runit
  • r-cran-knitr
  • r-bioc-biocstyle

Description

BioConductor representation and manipulation of short genomic alignments

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5a914a2a7…024fe8a3
SHA-1c41fa68b…72819dc5
SHA-25619bdf428…a4c2da7a
SHA-512d73b097e…35306add

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/GenomicAlignments
usr/lib/R/site-library/GenomicAlignments/CITATION
usr/lib/R/site-library/GenomicAlignments/DESCRIPTION
usr/lib/R/site-library/GenomicAlignments/INDEX
usr/lib/R/site-library/GenomicAlignments/Meta
usr/lib/R/site-library/GenomicAlignments/Meta/Rd.rds
usr/lib/R/site-library/GenomicAlignments/Meta/features.rds
usr/lib/R/site-library/GenomicAlignments/Meta/hsearch.rds
usr/lib/R/site-library/GenomicAlignments/Meta/links.rds
usr/lib/R/site-library/GenomicAlignments/Meta/nsInfo.rds
usr/lib/R/site-library/GenomicAlignments/Meta/package.rds
usr/lib/R/site-library/GenomicAlignments/Meta/vignette.rds
usr/lib/R/site-library/GenomicAlignments/NAMESPACE
usr/lib/R/site-library/GenomicAlignments/NEWS
usr/lib/R/site-library/GenomicAlignments/R
usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments
usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdb
usr/lib/R/site-library/GenomicAlignments/R/GenomicAlignments.rdx
usr/lib/R/site-library/GenomicAlignments/doc
usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.R
usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.Rnw
usr/lib/R/site-library/GenomicAlignments/doc/GenomicAlignmentsIntroduction.pdf
usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.R
usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.Rnw
usr/lib/R/site-library/GenomicAlignments/doc/OverlapEncodings.pdf
usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.R
usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.Rmd
usr/lib/R/site-library/GenomicAlignments/doc/WorkingWithAlignedNucleotides.html
usr/lib/R/site-library/GenomicAlignments/doc/index.html
usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.R
usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.Rnw
usr/lib/R/site-library/GenomicAlignments/doc/summarizeOverlaps.pdf
usr/lib/R/site-library/GenomicAlignments/extdata
usr/lib/R/site-library/GenomicAlignments/extdata/sm_treated1.bam
usr/lib/R/site-library/GenomicAlignments/extdata/sm_untreated1.bam
usr/lib/R/site-library/GenomicAlignments/help
usr/lib/R/site-library/GenomicAlignments/help/AnIndex
usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdb
usr/lib/R/site-library/GenomicAlignments/help/GenomicAlignments.rdx
usr/lib/R/site-library/GenomicAlignments/help/aliases.rds
usr/lib/R/site-library/GenomicAlignments/help/paths.rds
usr/lib/R/site-library/GenomicAlignments/html
usr/lib/R/site-library/GenomicAlignments/html/00Index.html
usr/lib/R/site-library/GenomicAlignments/html/R.css
usr/lib/R/site-library/GenomicAlignments/libs
usr/lib/R/site-library/GenomicAlignments/libs/GenomicAlignments.so
usr/lib/R/site-library/GenomicAlignments/unitTests
usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignments-class.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_GAlignmentsList-class.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_cigar-utils.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_coordinate-mapping-methods.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_findSpliceOverlaps-methods.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_intra-range-methods.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentPairs.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignments.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_readGAlignmentsList.R
usr/lib/R/site-library/GenomicAlignments/unitTests/test_summarizeOverlaps-methods.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-genomicalignments
usr/share/doc/r-bioc-genomicalignments/changelog.Debian.gz
usr/share/doc/r-bioc-genomicalignments/copyright