r-bioc-genomicfeatures (1.58.0+dfsg-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.5 kB
Size expected
929.6 kB
Size actual
929.6 kB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-biocgenerics (>= 0.51.2)
  • r-bioc-s4vectors (>= 0.17.29)
  • r-bioc-iranges (>= 2.37.1)
  • r-bioc-genomeinfodb (>= 1.35.8)
  • r-bioc-genomicranges (>= 1.55.2)
  • r-bioc-annotationdbi (>= 1.41.4)
  • r-cran-dbi
  • r-bioc-xvector
  • r-bioc-biostrings
  • r-bioc-rtracklayer

Suggested packages

Recommended additional packages

  • r-bioc-txdbmaker
  • r-bioc-org.hs.eg.db
  • r-bioc-bsgenome
  • r-bioc-rsamtools
  • r-bioc-genomicalignments (>= 1.15.7)
  • r-bioc-ensembldb
  • r-bioc-annotationfilter
  • r-cran-runit
  • r-bioc-biocstyle
  • r-cran-knitr
  • r-cran-markdown

Description

GNU R tools for making and manipulating transcript centric annotations

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5d9ed7db2…c6371b65
SHA-103bf9895…15f2e2c7
SHA-256740cd111…4219d37e
SHA-51267f5bd4e…fd5a9266

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/GenomicFeatures
usr/lib/R/site-library/GenomicFeatures/CITATION
usr/lib/R/site-library/GenomicFeatures/DESCRIPTION
usr/lib/R/site-library/GenomicFeatures/INDEX
usr/lib/R/site-library/GenomicFeatures/Meta
usr/lib/R/site-library/GenomicFeatures/Meta/Rd.rds
usr/lib/R/site-library/GenomicFeatures/Meta/features.rds
usr/lib/R/site-library/GenomicFeatures/Meta/hsearch.rds
usr/lib/R/site-library/GenomicFeatures/Meta/links.rds
usr/lib/R/site-library/GenomicFeatures/Meta/nsInfo.rds
usr/lib/R/site-library/GenomicFeatures/Meta/package.rds
usr/lib/R/site-library/GenomicFeatures/Meta/vignette.rds
usr/lib/R/site-library/GenomicFeatures/NAMESPACE
usr/lib/R/site-library/GenomicFeatures/NEWS
usr/lib/R/site-library/GenomicFeatures/R
usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures
usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdb
usr/lib/R/site-library/GenomicFeatures/R/GenomicFeatures.rdx
usr/lib/R/site-library/GenomicFeatures/doc
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.R
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.Rmd
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.html
usr/lib/R/site-library/GenomicFeatures/doc/GenomicFeatures.md
usr/lib/R/site-library/GenomicFeatures/doc/index.html
usr/lib/R/site-library/GenomicFeatures/extdata
usr/lib/R/site-library/GenomicFeatures/extdata/Biomart_Ensembl_sample.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/FeatureDb.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/ITAG4.1_gene_models.subset.gff
usr/lib/R/site-library/GenomicFeatures/extdata/hg19_knownGene_sample.sqlite
usr/lib/R/site-library/GenomicFeatures/extdata/sample_ranges.rds
usr/lib/R/site-library/GenomicFeatures/help
usr/lib/R/site-library/GenomicFeatures/help/AnIndex
usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdb
usr/lib/R/site-library/GenomicFeatures/help/GenomicFeatures.rdx
usr/lib/R/site-library/GenomicFeatures/help/aliases.rds
usr/lib/R/site-library/GenomicFeatures/help/paths.rds
usr/lib/R/site-library/GenomicFeatures/html
usr/lib/R/site-library/GenomicFeatures/html/00Index.html
usr/lib/R/site-library/GenomicFeatures/html/R.css
usr/lib/R/site-library/GenomicFeatures/script
usr/lib/R/site-library/GenomicFeatures/script/README
usr/lib/R/site-library/GenomicFeatures/unitTests
usr/lib/R/site-library/GenomicFeatures/unitTests/test_TxDb_seqinfo.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_coordinate-mapping-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_exonicParts.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_getPromoterSeq-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_makeIdsForUniqueDataFrameRows.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_mapIdsToRanges.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_nearest-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_select-methods.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptLengths.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcripts.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsBy.R
usr/lib/R/site-library/GenomicFeatures/unitTests/test_transcriptsByOverlaps.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-genomicfeatures
usr/share/doc/r-bioc-genomicfeatures/changelog.Debian.gz
usr/share/doc/r-bioc-genomicfeatures/copyright