r-bioc-gviz (1.50.0+dfsg-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
7 kB
Size expected
5.2 MB
Size actual
5.2 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-s4vectors (>= 0.9.25)
  • r-bioc-iranges (>= 1.99.18)
  • r-bioc-genomicranges (>= 1.17.20)
  • r-bioc-xvector (>= 0.5.7)
  • r-bioc-rtracklayer (>= 1.25.13)
  • r-cran-lattice
  • r-cran-rcolorbrewer
  • r-bioc-biomart (>= 2.11.0)
  • r-bioc-annotationdbi (>= 1.27.5)
  • r-bioc-biobase (>= 2.15.3)
  • r-bioc-genomicfeatures (>= 1.17.22)
  • r-bioc-ensembldb (>= 2.11.3)
  • r-bioc-bsgenome (>= 1.33.1)
  • r-bioc-biostrings (>= 2.33.11)
  • r-bioc-biovizbase (>= 1.13.8)
  • r-bioc-rsamtools (>= 1.17.28)
  • r-cran-latticeextra (>= 0.6-26)
  • r-cran-matrixstats (>= 0.8.14)
  • r-bioc-genomicalignments (>= 1.1.16)
  • r-bioc-genomeinfodb (>= 1.1.3)
  • r-bioc-biocgenerics (>= 0.11.3)
  • r-cran-digest (>= 0.6.8)

Suggested packages

Recommended additional packages

  • r-cran-xml2
  • r-bioc-biocstyle
  • r-cran-knitr
  • r-cran-rmarkdown
  • r-cran-testthat

Description

Plotting data and annotation information along genomic coordinates

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5029eecea…950b3a3c
SHA-14909f2b6…d5e195d5
SHA-256875b10f5…0e0a9923
SHA-512557cd3ec…529fc46e

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/Gviz
usr/lib/R/site-library/Gviz/CITATION
usr/lib/R/site-library/Gviz/DESCRIPTION
usr/lib/R/site-library/Gviz/INDEX
usr/lib/R/site-library/Gviz/Meta
usr/lib/R/site-library/Gviz/Meta/Rd.rds
usr/lib/R/site-library/Gviz/Meta/data.rds
usr/lib/R/site-library/Gviz/Meta/features.rds
usr/lib/R/site-library/Gviz/Meta/hsearch.rds
usr/lib/R/site-library/Gviz/Meta/links.rds
usr/lib/R/site-library/Gviz/Meta/nsInfo.rds
usr/lib/R/site-library/Gviz/Meta/package.rds
usr/lib/R/site-library/Gviz/Meta/vignette.rds
usr/lib/R/site-library/Gviz/NAMESPACE
usr/lib/R/site-library/Gviz/NEWS
usr/lib/R/site-library/Gviz/R
usr/lib/R/site-library/Gviz/R/Gviz
usr/lib/R/site-library/Gviz/R/Gviz.rdb
usr/lib/R/site-library/Gviz/R/Gviz.rdx
usr/lib/R/site-library/Gviz/data
usr/lib/R/site-library/Gviz/data/alTrackGenes.rda
usr/lib/R/site-library/Gviz/data/biomTrack.rda
usr/lib/R/site-library/Gviz/data/biomTrack2.rda
usr/lib/R/site-library/Gviz/data/bmTrack.rda
usr/lib/R/site-library/Gviz/data/collapseTrack.rda
usr/lib/R/site-library/Gviz/data/cpgIslands.rda
usr/lib/R/site-library/Gviz/data/cyp2b10.rda
usr/lib/R/site-library/Gviz/data/denseAnnTrack.rda
usr/lib/R/site-library/Gviz/data/dtHoriz.rda
usr/lib/R/site-library/Gviz/data/geneDetails.rda
usr/lib/R/site-library/Gviz/data/geneModels.rda
usr/lib/R/site-library/Gviz/data/idTrack.rda
usr/lib/R/site-library/Gviz/data/ideoTrack.rda
usr/lib/R/site-library/Gviz/data/itrack.rda
usr/lib/R/site-library/Gviz/data/twoGroups.rda
usr/lib/R/site-library/Gviz/data/ucscItems.rda
usr/lib/R/site-library/Gviz/doc
usr/lib/R/site-library/Gviz/doc/Gviz.R
usr/lib/R/site-library/Gviz/doc/Gviz.Rmd
usr/lib/R/site-library/Gviz/doc/index.html
usr/lib/R/site-library/Gviz/extdata
usr/lib/R/site-library/Gviz/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam
usr/lib/R/site-library/Gviz/extdata/GSM461176_S2_DRSC_Untreated_1_bmm.bam.bai
usr/lib/R/site-library/Gviz/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam
usr/lib/R/site-library/Gviz/extdata/GSM461179_S2_DRSC_CG8144_RNAi_1_bmm.bam.bai
usr/lib/R/site-library/Gviz/extdata/biomartVersionsLatest.txt
usr/lib/R/site-library/Gviz/extdata/biomartVersionsNow.txt
usr/lib/R/site-library/Gviz/extdata/gapped.bam
usr/lib/R/site-library/Gviz/extdata/gapped.bam.bai
usr/lib/R/site-library/Gviz/extdata/indels.bam
usr/lib/R/site-library/Gviz/extdata/indels.bam.bai
usr/lib/R/site-library/Gviz/extdata/snps.bam
usr/lib/R/site-library/Gviz/extdata/snps.bam.bai
usr/lib/R/site-library/Gviz/extdata/test.2bit
usr/lib/R/site-library/Gviz/extdata/test.bam
usr/lib/R/site-library/Gviz/extdata/test.bam.bai
usr/lib/R/site-library/Gviz/extdata/test.bed
usr/lib/R/site-library/Gviz/extdata/test.bedGraph
usr/lib/R/site-library/Gviz/extdata/test.bw
usr/lib/R/site-library/Gviz/extdata/test.fa
usr/lib/R/site-library/Gviz/extdata/test.fa.fai
usr/lib/R/site-library/Gviz/extdata/test.gff
usr/lib/R/site-library/Gviz/extdata/test.gff1
usr/lib/R/site-library/Gviz/extdata/test.gff2
usr/lib/R/site-library/Gviz/extdata/test.gff3
usr/lib/R/site-library/Gviz/extdata/test.gtf
usr/lib/R/site-library/Gviz/extdata/test.wig
usr/lib/R/site-library/Gviz/help
usr/lib/R/site-library/Gviz/help/AnIndex
usr/lib/R/site-library/Gviz/help/Gviz.rdb
usr/lib/R/site-library/Gviz/help/Gviz.rdx
usr/lib/R/site-library/Gviz/help/aliases.rds
usr/lib/R/site-library/Gviz/help/paths.rds
usr/lib/R/site-library/Gviz/html
usr/lib/R/site-library/Gviz/html/00Index.html
usr/lib/R/site-library/Gviz/html/R.css
usr/lib/R/site-library/Gviz/scripts
usr/lib/R/site-library/Gviz/scripts/documentation.R
usr/lib/R/site-library/Gviz/scripts/testBiomartGenomeMappings.R
usr/lib/R/site-library/Gviz/scripts/updateBiomartGenomeMappings.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-gviz
usr/share/doc/r-bioc-gviz/changelog.Debian.gz
usr/share/doc/r-bioc-gviz/copyright
usr/share/doc/r-bioc-gviz/examples
usr/share/doc/r-bioc-gviz/examples/vignettes
usr/share/doc/r-bioc-gviz/examples/vignettes/Gviz-example.png
usr/share/doc/r-bioc-gviz/examples/vignettes/Gviz-logo.png
usr/share/doc/r-bioc-gviz/examples/vignettes/Gviz-refs.bib
usr/share/doc/r-bioc-gviz/examples/vignettes/Gviz.Rmd
usr/share/doc/r-bioc-gviz/examples/vignettes/ucsc1.png
usr/share/doc/r-bioc-gviz/examples/vignettes/ucsc2.png