r-bioc-monocle (2.34.0-2)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.8 kB
Size expected
1.5 MB
Size actual
1.5 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-cran-matrix (>= 1.2-6)
  • r-bioc-biobase
  • r-cran-ggplot2 (>= 1.0.0)
  • r-cran-vgam (>= 1.0-6)
  • r-cran-ddrtree (>= 0.1.4)
  • r-cran-igraph (>= 1.0.1)
  • r-bioc-biocgenerics
  • r-bioc-hsmmsinglecell (>= 0.101.5)
  • r-cran-plyr
  • r-cran-cluster
  • r-cran-combinat
  • r-cran-fastica
  • r-cran-irlba (>= 2.0.0)
  • r-cran-matrixstats
  • r-cran-rtsne
  • r-cran-mass
  • r-cran-reshape2
  • r-cran-leidenbase (>= 0.1.9)
  • r-bioc-limma
  • r-cran-tibble
  • r-cran-dplyr
  • r-cran-pheatmap
  • r-cran-stringr
  • r-cran-proxy
  • r-cran-slam
  • r-cran-viridis
  • r-bioc-biocviews
  • r-cran-rann (>= 2.5)
  • r-cran-rcpp (>= 0.12.0)
  • libc6 (>= 2.11)
  • libgcc-s1 (>= 3.0)
  • libstdc++6 (>= 14)

Suggested packages

Recommended additional packages

  • r-cran-hmisc
  • r-cran-knitr
  • r-cran-seurat
  • r-bioc-scater
  • r-cran-testthat

Description

clustering, differential expression, and trajectory analysis for RNA-Seq

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD5d7d141de…ed43789f
SHA-1becb59aa…9e2d6039
SHA-256f97de19b…3899c8fd
SHA-512bfb40e0f…cce6c69c

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/monocle
usr/lib/R/site-library/monocle/CITATION
usr/lib/R/site-library/monocle/DESCRIPTION
usr/lib/R/site-library/monocle/INDEX
usr/lib/R/site-library/monocle/Meta
usr/lib/R/site-library/monocle/Meta/Rd.rds
usr/lib/R/site-library/monocle/Meta/data.rds
usr/lib/R/site-library/monocle/Meta/features.rds
usr/lib/R/site-library/monocle/Meta/hsearch.rds
usr/lib/R/site-library/monocle/Meta/links.rds
usr/lib/R/site-library/monocle/Meta/nsInfo.rds
usr/lib/R/site-library/monocle/Meta/package.rds
usr/lib/R/site-library/monocle/Meta/vignette.rds
usr/lib/R/site-library/monocle/NAMESPACE
usr/lib/R/site-library/monocle/NEWS
usr/lib/R/site-library/monocle/R
usr/lib/R/site-library/monocle/R/monocle
usr/lib/R/site-library/monocle/R/monocle.rdb
usr/lib/R/site-library/monocle/R/monocle.rdx
usr/lib/R/site-library/monocle/data
usr/lib/R/site-library/monocle/data/Rdata.rdb
usr/lib/R/site-library/monocle/data/Rdata.rds
usr/lib/R/site-library/monocle/data/Rdata.rdx
usr/lib/R/site-library/monocle/doc
usr/lib/R/site-library/monocle/doc/index.html
usr/lib/R/site-library/monocle/doc/monocle-vignette.R
usr/lib/R/site-library/monocle/doc/monocle-vignette.Rnw
usr/lib/R/site-library/monocle/doc/monocle-vignette.pdf
usr/lib/R/site-library/monocle/extdata
usr/lib/R/site-library/monocle/extdata/lung_exprs_data.RData
usr/lib/R/site-library/monocle/extdata/lung_feature_data.RData
usr/lib/R/site-library/monocle/extdata/lung_phenotype_data.RData
usr/lib/R/site-library/monocle/help
usr/lib/R/site-library/monocle/help/AnIndex
usr/lib/R/site-library/monocle/help/aliases.rds
usr/lib/R/site-library/monocle/help/monocle.rdb
usr/lib/R/site-library/monocle/help/monocle.rdx
usr/lib/R/site-library/monocle/help/paths.rds
usr/lib/R/site-library/monocle/html
usr/lib/R/site-library/monocle/html/00Index.html
usr/lib/R/site-library/monocle/html/R.css
usr/lib/R/site-library/monocle/libs
usr/lib/R/site-library/monocle/libs/monocle.so
usr/lib/R/site-library/monocle/tests
usr/lib/R/site-library/monocle/tests/basic_tests.R
usr/lib/R/site-library/monocle/tests/test.addCellType.R
usr/lib/R/site-library/monocle/tests/test.calculateMarkerSpecificity.R
usr/lib/R/site-library/monocle/tests/test.classifyCells.R
usr/lib/R/site-library/monocle/tests/test.clusterCells.R
usr/lib/R/site-library/monocle/tests/test.detectGenes.R
usr/lib/R/site-library/monocle/tests/test.differentialGeneTest.R
usr/lib/R/site-library/monocle/tests/test.dispersionTable.R
usr/lib/R/site-library/monocle/tests/test.estimateDispersions.R
usr/lib/R/site-library/monocle/tests/test.markerDiffTable.R
usr/lib/R/site-library/monocle/tests/test.newCellDataSet.R
usr/lib/R/site-library/monocle/tests/test.newCellTypeHierarchy.R
usr/lib/R/site-library/monocle/tests/test.orderCells.R
usr/lib/R/site-library/monocle/tests/test.plotCellTrajectory.R
usr/lib/R/site-library/monocle/tests/test.plot_cell_clusters.R
usr/lib/R/site-library/monocle/tests/test.plot_genes_jitter.R
usr/lib/R/site-library/monocle/tests/test.plot_ordering_genes.R
usr/lib/R/site-library/monocle/tests/test.plot_pc_variance_explained.R
usr/lib/R/site-library/monocle/tests/test.reduceDimension.R
usr/lib/R/site-library/monocle/tests/test.relative2abs.R
usr/lib/R/site-library/monocle/tests/test.setOrderingFilter.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-monocle
usr/share/doc/r-bioc-monocle/changelog.Debian.gz
usr/share/doc/r-bioc-monocle/copyright