r-bioc-mutationalpatterns (3.16.0+dfsg-3)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
4.6 kB
Size expected
2.5 MB
Size actual
2.5 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-genomicranges (>= 1.24.0)
  • r-cran-nmf (>= 0.20.6)
  • r-bioc-s4vectors
  • r-bioc-biocgenerics (>= 0.18.0)
  • r-bioc-bsgenome (>= 1.40.0)
  • r-bioc-variantannotation (>= 1.18.1)
  • r-cran-dplyr (>= 0.8.3)
  • r-cran-tibble (>= 2.1.3)
  • r-cran-purrr (>= 0.3.2)
  • r-cran-tidyr (>= 1.0.0)
  • r-cran-stringr (>= 1.4.0)
  • r-cran-magrittr (>= 1.5)
  • r-cran-ggplot2 (>= 2.1.0)
  • r-cran-pracma (>= 1.8.8)
  • r-bioc-iranges (>= 2.6.0)
  • r-bioc-genomeinfodb (>= 1.12.0)
  • r-bioc-biostrings (>= 2.40.0)
  • r-cran-ggdendro (>= 0.1-20)
  • r-cran-cowplot (>= 0.9.2)
  • r-cran-ggalluvial (>= 0.12.2)
  • r-cran-rcolorbrewer

Suggested packages

Recommended additional packages

  • r-bioc-rtracklayer (>= 1.32.2)
  • r-bioc-genomicfeatures
  • r-bioc-annotationdbi

Description

GNU R comprehensive genome-wide analysis of mutational processes

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD52e9b1877…f23ee3d0
SHA-1a5a2fe97…6dd3df6b
SHA-25662c28c48…ec4ef1f7
SHA-512eb99c158…06f8ec2d

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/MutationalPatterns
usr/lib/R/site-library/MutationalPatterns/CITATION
usr/lib/R/site-library/MutationalPatterns/DESCRIPTION
usr/lib/R/site-library/MutationalPatterns/INDEX
usr/lib/R/site-library/MutationalPatterns/Meta
usr/lib/R/site-library/MutationalPatterns/Meta/Rd.rds
usr/lib/R/site-library/MutationalPatterns/Meta/features.rds
usr/lib/R/site-library/MutationalPatterns/Meta/hsearch.rds
usr/lib/R/site-library/MutationalPatterns/Meta/links.rds
usr/lib/R/site-library/MutationalPatterns/Meta/nsInfo.rds
usr/lib/R/site-library/MutationalPatterns/Meta/package.rds
usr/lib/R/site-library/MutationalPatterns/Meta/vignette.rds
usr/lib/R/site-library/MutationalPatterns/NAMESPACE
usr/lib/R/site-library/MutationalPatterns/NEWS
usr/lib/R/site-library/MutationalPatterns/R
usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns
usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdb
usr/lib/R/site-library/MutationalPatterns/R/MutationalPatterns.rdx
usr/lib/R/site-library/MutationalPatterns/doc
usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.R
usr/lib/R/site-library/MutationalPatterns/doc/Introduction_to_MutationalPatterns.Rmd
usr/lib/R/site-library/MutationalPatterns/doc/index.html
usr/lib/R/site-library/MutationalPatterns/extdata
usr/lib/R/site-library/MutationalPatterns/extdata/ReplicationDirectionRegions.bed
usr/lib/R/site-library/MutationalPatterns/extdata/blood-AC.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/blood-ACC55.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/blood-BCH.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/callableloci-sample.bed
usr/lib/R/site-library/MutationalPatterns/extdata/colon1-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/colon2-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/colon3-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/duplicate.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/empty.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/intestine1-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/intestine2-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/intestine3-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/liver1-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/liver2-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/liver3-sample.vcf
usr/lib/R/site-library/MutationalPatterns/extdata/signatures
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/SIGNAL_conversion_matrix.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.1_reference.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh37.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_GRCh38.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_COSMIC_v3.2_reference_mm10.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/dbs_SIGNAL_exposure.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.1_reference.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/indel_COSMIC_v3.2_reference_GRCh37.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.1_reference.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh37.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_GRCh38.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_COSMIC_v3.2_reference_mm10.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_exposure.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_reference.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SIGNAL_tissue.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/snv_SPARSE_reference.txt
usr/lib/R/site-library/MutationalPatterns/extdata/signatures/tsb_snv_COSMIC_v3.1_reference.txt
usr/lib/R/site-library/MutationalPatterns/help
usr/lib/R/site-library/MutationalPatterns/help/AnIndex
usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdb
usr/lib/R/site-library/MutationalPatterns/help/MutationalPatterns.rdx
usr/lib/R/site-library/MutationalPatterns/help/aliases.rds
usr/lib/R/site-library/MutationalPatterns/help/paths.rds
usr/lib/R/site-library/MutationalPatterns/html
usr/lib/R/site-library/MutationalPatterns/html/00Index.html
usr/lib/R/site-library/MutationalPatterns/html/R.css
usr/lib/R/site-library/MutationalPatterns/scripts
usr/lib/R/site-library/MutationalPatterns/scripts/Format_signatures.R
usr/lib/R/site-library/MutationalPatterns/scripts/create_example_dbs.R
usr/lib/R/site-library/MutationalPatterns/scripts/create_example_indels.R
usr/lib/R/site-library/MutationalPatterns/scripts/create_example_mbs.R
usr/lib/R/site-library/MutationalPatterns/scripts/create_example_regulatory_regions.R
usr/lib/R/site-library/MutationalPatterns/scripts/create_example_snvs.R
usr/lib/R/site-library/MutationalPatterns/scripts/create_example_vcfs.R
usr/lib/R/site-library/MutationalPatterns/states
usr/lib/R/site-library/MutationalPatterns/states/CTCF_g_data.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_dbs_counts.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_grl.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_grl_dbs_context.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_grl_indel_context.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_grl_mbs.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_indel_counts.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_indels_counts_split_region.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_indels_longmatrix_split_region.rds
usr/lib/R/site-library/MutationalPatterns/states/blood_mbs_counts.rds
usr/lib/R/site-library/MutationalPatterns/states/blosum62.rds
usr/lib/R/site-library/MutationalPatterns/states/bootstrapped_snv_refit.rds
usr/lib/R/site-library/MutationalPatterns/states/context_mismatches.rds
usr/lib/R/site-library/MutationalPatterns/states/dbs_refit.rds
usr/lib/R/site-library/MutationalPatterns/states/distr_data.rds
usr/lib/R/site-library/MutationalPatterns/states/grl_split_region.rds
usr/lib/R/site-library/MutationalPatterns/states/indel_refit.rds
usr/lib/R/site-library/MutationalPatterns/states/lesion_segregation.rds
usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data.rds
usr/lib/R/site-library/MutationalPatterns/states/mut_mat_data_extended.rds
usr/lib/R/site-library/MutationalPatterns/states/mut_mat_longregions.rds
usr/lib/R/site-library/MutationalPatterns/states/mut_mat_repli.rds
usr/lib/R/site-library/MutationalPatterns/states/mut_mat_s_data.rds
usr/lib/R/site-library/MutationalPatterns/states/mut_mat_splitregions.rds
usr/lib/R/site-library/MutationalPatterns/states/nmf_res_data.rds
usr/lib/R/site-library/MutationalPatterns/states/nmf_res_strand_data.rds
usr/lib/R/site-library/MutationalPatterns/states/promoter_flanking_g_data.rds
usr/lib/R/site-library/MutationalPatterns/states/promoter_g_data.rds
usr/lib/R/site-library/MutationalPatterns/states/read_vcfs_as_granges_output.rds
usr/lib/R/site-library/MutationalPatterns/states/regional_sims.rds
usr/lib/R/site-library/MutationalPatterns/states/regulatory_data.rds
usr/lib/R/site-library/MutationalPatterns/states/repli_strand.rds
usr/lib/R/site-library/MutationalPatterns/states/snv_refit.rds
usr/lib/R/site-library/MutationalPatterns/states/strict_best_snv_refit.rds
usr/lib/R/site-library/MutationalPatterns/states/strict_snv_refit.rds
usr/share
usr/share/doc
usr/share/doc/r-bioc-mutationalpatterns
usr/share/doc/r-bioc-mutationalpatterns/changelog.Debian.gz
usr/share/doc/r-bioc-mutationalpatterns/copyright