r-bioc-phyloseq (1.54.0+dfsg-1)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
3.1 kB
Size expected
2.3 MB
Size actual
2.3 MB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.22
  • r-cran-ade4 (>= 1.7-4)
  • r-cran-ape (>= 5.0)
  • r-bioc-biobase (>= 2.36.2)
  • r-bioc-biocgenerics (>= 0.22.0)
  • r-bioc-biomformat (>= 1.0.0)
  • r-bioc-biostrings (>= 2.40.0)
  • r-cran-cluster (>= 2.0.4)
  • r-cran-data.table (>= 1.10.4)
  • r-cran-foreach (>= 1.4.3)
  • r-cran-ggplot2 (>= 2.1.0)
  • r-cran-igraph (>= 1.0.1)
  • r-bioc-multtest (>= 2.28.0)
  • r-cran-plyr (>= 1.8.3)
  • r-cran-reshape2 (>= 1.4.1)
  • r-cran-scales (>= 0.4.0)
  • r-cran-vegan (>= 2.5)

Suggested packages

Recommended additional packages

  • r-cran-magrittr (>= 1.5)

Description

GNU R handling and analysis of high-throughput microbiome census data

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD54e7e1687…02d4e17c
SHA-1673a24fe…898ac163
SHA-256dd238c4a…dab1bfe4
SHA-51293ae9633…260fa0e1

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/phyloseq
usr/lib/R/site-library/phyloseq/CITATION
usr/lib/R/site-library/phyloseq/DESCRIPTION
usr/lib/R/site-library/phyloseq/INDEX
usr/lib/R/site-library/phyloseq/Meta
usr/lib/R/site-library/phyloseq/Meta/Rd.rds
usr/lib/R/site-library/phyloseq/Meta/data.rds
usr/lib/R/site-library/phyloseq/Meta/features.rds
usr/lib/R/site-library/phyloseq/Meta/hsearch.rds
usr/lib/R/site-library/phyloseq/Meta/links.rds
usr/lib/R/site-library/phyloseq/Meta/nsInfo.rds
usr/lib/R/site-library/phyloseq/Meta/package.rds
usr/lib/R/site-library/phyloseq/Meta/vignette.rds
usr/lib/R/site-library/phyloseq/NAMESPACE
usr/lib/R/site-library/phyloseq/NEWS
usr/lib/R/site-library/phyloseq/R
usr/lib/R/site-library/phyloseq/R/phyloseq
usr/lib/R/site-library/phyloseq/R/phyloseq.rdb
usr/lib/R/site-library/phyloseq/R/phyloseq.rdx
usr/lib/R/site-library/phyloseq/data
usr/lib/R/site-library/phyloseq/data/GlobalPatterns.RData
usr/lib/R/site-library/phyloseq/data/datalist
usr/lib/R/site-library/phyloseq/data/enterotype.RData
usr/lib/R/site-library/phyloseq/data/esophagus.RData
usr/lib/R/site-library/phyloseq/data/soilrep.RData
usr/lib/R/site-library/phyloseq/doc
usr/lib/R/site-library/phyloseq/doc/Unweighted_UniFrac.RData
usr/lib/R/site-library/phyloseq/doc/index.html
usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.R
usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.Rmd
usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.R
usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.Rmd
usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.R
usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.Rmd
usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.R
usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.Rmd
usr/lib/R/site-library/phyloseq/extdata
usr/lib/R/site-library/phyloseq/extdata/GP_otu_table_rand_short.txt.gz
usr/lib/R/site-library/phyloseq/extdata/GP_tree_rand_short.newick.gz
usr/lib/R/site-library/phyloseq/extdata/biom-refseq.fasta
usr/lib/R/site-library/phyloseq/extdata/biom-tree.phy
usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.list.gz
usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.shared.gz
usr/lib/R/site-library/phyloseq/extdata/esophagus.good.groups.gz
usr/lib/R/site-library/phyloseq/extdata/esophagus.tree.gz
usr/lib/R/site-library/phyloseq/extdata/gg13-5-73.tree.gz
usr/lib/R/site-library/phyloseq/extdata/gp500-pycogent.py
usr/lib/R/site-library/phyloseq/extdata/gp500-uuf.csv
usr/lib/R/site-library/phyloseq/extdata/gp500-wuf.csv
usr/lib/R/site-library/phyloseq/extdata/gp500-wufu.csv
usr/lib/R/site-library/phyloseq/extdata/gp500test.env.txt
usr/lib/R/site-library/phyloseq/extdata/gp500test.tree
usr/lib/R/site-library/phyloseq/extdata/master_map.txt
usr/lib/R/site-library/phyloseq/extdata/min_dense_otu_table.biom
usr/lib/R/site-library/phyloseq/extdata/min_sparse_otu_table.biom
usr/lib/R/site-library/phyloseq/extdata/mothur_example.cons.taxonomy.gz
usr/lib/R/site-library/phyloseq/extdata/phyloseq.png
usr/lib/R/site-library/phyloseq/extdata/qiime500-refseq.fasta
usr/lib/R/site-library/phyloseq/extdata/rformat_dist_0.03.txt.gz
usr/lib/R/site-library/phyloseq/extdata/rich_dense_otu_table.biom
usr/lib/R/site-library/phyloseq/extdata/rich_sparse_otu_table.biom
usr/lib/R/site-library/phyloseq/extdata/study_1457_split_library_seqs_and_mapping.zip
usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.tar.gz
usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.zip
usr/lib/R/site-library/phyloseq/extdata/study_gp.txt
usr/lib/R/site-library/phyloseq/extdata/usearch.uc
usr/lib/R/site-library/phyloseq/help
usr/lib/R/site-library/phyloseq/help/AnIndex
usr/lib/R/site-library/phyloseq/help/aliases.rds
usr/lib/R/site-library/phyloseq/help/paths.rds
usr/lib/R/site-library/phyloseq/help/phyloseq.rdb
usr/lib/R/site-library/phyloseq/help/phyloseq.rdx
usr/lib/R/site-library/phyloseq/html
usr/lib/R/site-library/phyloseq/html/00Index.html
usr/lib/R/site-library/phyloseq/html/R.css
usr/lib/R/site-library/phyloseq/scripts
usr/lib/R/site-library/phyloseq/scripts/installer.R
usr/share
usr/share/doc
usr/share/doc/r-bioc-phyloseq
usr/share/doc/r-bioc-phyloseq/changelog.Debian.gz
usr/share/doc/r-bioc-phyloseq/copyright