r-bioc-rsamtools (2.22.0+dfsg-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-sid
- Repository
- https://deb.debian.org/debian
- Codename
- sid
- Component
- main
- Source
- none
- Architecture
- s390x
- Section
- gnu-r
- Priority
- optional
- Maintainer
- Debian R Packages Maintainers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 5.8 kB
- Size expected
- 3.6 MB
- Size actual
- 3.6 MB
- Size match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-genomeinfodb (>= 1.1.3)
- r-bioc-genomicranges (>= 1.31.8)
- r-bioc-biostrings (>= 2.47.6)
- r-bioc-biocgenerics (>= 0.25.1)
- r-bioc-s4vectors (>= 0.17.25)
- r-bioc-iranges (>= 2.13.12)
- r-bioc-xvector (>= 0.19.7)
- r-bioc-zlibbioc
- r-cran-bitops
- r-bioc-biocparallel
- r-bioc-rhtslib (>= 2.99.1)
- libbz2-1.0
- libc6 (>= 2.34)
- libcurl4t64 (>= 7.18.0)
- libgcc-s1 (>= 3.0)
- liblzma5 (>= 5.1.1alpha+20120614)
- libstdc++6 (>= 11)
- zlib1g (>= 1:1.2.3.3)
Suggested packages
Recommended additional packages
Description
GNU R binary alignment (BAM), variant call (BCF), or tabix file import
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 5dc95b6c…4c39ace2 | |
| SHA-1 | fb9903ff…475df055 | |
| SHA-256 | 3e90d1da…f8e4db5a | |
| SHA-512 | b35dda83…dea28afd |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/Rsamtools usr/lib/R/site-library/Rsamtools/DESCRIPTION usr/lib/R/site-library/Rsamtools/INDEX usr/lib/R/site-library/Rsamtools/Meta usr/lib/R/site-library/Rsamtools/Meta/Rd.rds usr/lib/R/site-library/Rsamtools/Meta/features.rds usr/lib/R/site-library/Rsamtools/Meta/hsearch.rds usr/lib/R/site-library/Rsamtools/Meta/links.rds usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds usr/lib/R/site-library/Rsamtools/Meta/package.rds usr/lib/R/site-library/Rsamtools/Meta/vignette.rds usr/lib/R/site-library/Rsamtools/NAMESPACE usr/lib/R/site-library/Rsamtools/NEWS usr/lib/R/site-library/Rsamtools/R usr/lib/R/site-library/Rsamtools/R/Rsamtools usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx usr/lib/R/site-library/Rsamtools/doc usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rmd usr/lib/R/site-library/Rsamtools/doc/index.html usr/lib/R/site-library/Rsamtools/extdata usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai usr/lib/R/site-library/Rsamtools/extdata/ex1.bam usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.gz usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.gz.csi usr/lib/R/site-library/Rsamtools/extdata/ex1.sam usr/lib/R/site-library/Rsamtools/extdata/ex1.vcf.gz usr/lib/R/site-library/Rsamtools/extdata/ex1.vcf.gz.csi usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.sam usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam.bai usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.sam usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda usr/lib/R/site-library/Rsamtools/extdata/pileup.txt usr/lib/R/site-library/Rsamtools/extdata/querybins.bam usr/lib/R/site-library/Rsamtools/extdata/querybins.bam.bai usr/lib/R/site-library/Rsamtools/extdata/querybins.sam usr/lib/R/site-library/Rsamtools/extdata/revbins.bam usr/lib/R/site-library/Rsamtools/extdata/revbins.bam.bai usr/lib/R/site-library/Rsamtools/extdata/revbins.sam usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam.bai usr/lib/R/site-library/Rsamtools/extdata/tagfilter.sam usr/lib/R/site-library/Rsamtools/extdata/tiny.bam usr/lib/R/site-library/Rsamtools/extdata/tiny.bam.bai usr/lib/R/site-library/Rsamtools/extdata/tiny.sam usr/lib/R/site-library/Rsamtools/extdata/tophat usr/lib/R/site-library/Rsamtools/extdata/tophat/README usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed usr/lib/R/site-library/Rsamtools/help usr/lib/R/site-library/Rsamtools/help/AnIndex usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx usr/lib/R/site-library/Rsamtools/help/aliases.rds usr/lib/R/site-library/Rsamtools/help/paths.rds usr/lib/R/site-library/Rsamtools/html usr/lib/R/site-library/Rsamtools/html/00Index.html usr/lib/R/site-library/Rsamtools/html/R.css usr/lib/R/site-library/Rsamtools/libs usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so usr/lib/R/site-library/Rsamtools/scripts usr/lib/R/site-library/Rsamtools/scripts/BamViews-1000g.R usr/lib/R/site-library/Rsamtools/scripts/features.R usr/lib/R/site-library/Rsamtools/scripts/remote_test.R usr/lib/R/site-library/Rsamtools/scripts/update-samtools.sh usr/lib/R/site-library/Rsamtools/unitTests usr/lib/R/site-library/Rsamtools/unitTests/cases usr/lib/R/site-library/Rsamtools/unitTests/cases/RNEXT.bam usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1.sam.gz usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_noindex.bam usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_unsort.bam usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai usr/lib/R/site-library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf.gz usr/lib/R/site-library/Rsamtools/unitTests/cases/no_header_line.vcf.gz usr/lib/R/site-library/Rsamtools/unitTests/cases/pileup-no-stars.txt usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam.bai usr/lib/R/site-library/Rsamtools/unitTests/test_BamFile.R usr/lib/R/site-library/Rsamtools/unitTests/test_BamViews.R usr/lib/R/site-library/Rsamtools/unitTests/test_BcfFile.R usr/lib/R/site-library/Rsamtools/unitTests/test_FaFile.R usr/lib/R/site-library/Rsamtools/unitTests/test_RsamtoolsFile.R usr/lib/R/site-library/Rsamtools/unitTests/test_TabixFile.R usr/lib/R/site-library/Rsamtools/unitTests/test_applyPileups.R usr/lib/R/site-library/Rsamtools/unitTests/test_asBam.R usr/lib/R/site-library/Rsamtools/unitTests/test_bam.R usr/lib/R/site-library/Rsamtools/unitTests/test_bam_count.R usr/lib/R/site-library/Rsamtools/unitTests/test_bam_header.R usr/lib/R/site-library/Rsamtools/unitTests/test_compression.R usr/lib/R/site-library/Rsamtools/unitTests/test_mapqfilter.R usr/lib/R/site-library/Rsamtools/unitTests/test_phred2ASCIIOffset.R usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_nowhich.R usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_querybins.R usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_revbins.R usr/lib/R/site-library/Rsamtools/unitTests/test_pileup_single_range.R usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R usr/lib/R/site-library/Rsamtools/unitTests/test_tagfilter.R usr/lib/R/site-library/Rsamtools/unitTests/test_testPairedEndBam.R usr/lib/R/site-library/Rsamtools/unitTests/test_utilities.R usr/share usr/share/doc usr/share/doc/r-bioc-rsamtools usr/share/doc/r-bioc-rsamtools/changelog.Debian.gz usr/share/doc/r-bioc-rsamtools/copyright