r-bioc-structuralvariantannotation (1.22.0+ds-3)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
none
Architecture
s390x
Section
gnu-r
Priority
optional
Maintainer
Debian R Packages Maintainers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
1.3 kB
Size expected
400.9 kB
Size actual
400.9 kB
Size match

Dependencies

Required package dependencies

  • r-api-4.0
  • r-api-bioc-3.20
  • r-bioc-genomicranges
  • r-bioc-rtracklayer
  • r-bioc-variantannotation
  • r-bioc-biocgenerics
  • r-cran-assertthat
  • r-bioc-biostrings
  • r-bioc-pwalign
  • r-cran-stringr
  • r-cran-dplyr
  • r-cran-rlang
  • r-bioc-genomicfeatures
  • r-bioc-iranges
  • r-bioc-s4vectors
  • r-bioc-summarizedexperiment
  • r-bioc-genomeinfodb

Suggested packages

Recommended additional packages

  • None

Description

Variant annotations for structural variants

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD58d896ee7…7d9ad09c
SHA-1c73e68c1…0b0b989e
SHA-25625a14119…15819f90
SHA-5120aa30f04…8564abc9

Contents

Files and directories included

.
usr
usr/lib
usr/lib/R
usr/lib/R/site-library
usr/lib/R/site-library/StructuralVariantAnnotation
usr/lib/R/site-library/StructuralVariantAnnotation/DESCRIPTION
usr/lib/R/site-library/StructuralVariantAnnotation/INDEX
usr/lib/R/site-library/StructuralVariantAnnotation/Meta
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/Rd.rds
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/features.rds
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/hsearch.rds
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/links.rds
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/nsInfo.rds
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/package.rds
usr/lib/R/site-library/StructuralVariantAnnotation/Meta/vignette.rds
usr/lib/R/site-library/StructuralVariantAnnotation/NAMESPACE
usr/lib/R/site-library/StructuralVariantAnnotation/NEWS
usr/lib/R/site-library/StructuralVariantAnnotation/R
usr/lib/R/site-library/StructuralVariantAnnotation/R/StructuralVariantAnnotation
usr/lib/R/site-library/StructuralVariantAnnotation/R/StructuralVariantAnnotation.rdb
usr/lib/R/site-library/StructuralVariantAnnotation/R/StructuralVariantAnnotation.rdx
usr/lib/R/site-library/StructuralVariantAnnotation/doc
usr/lib/R/site-library/StructuralVariantAnnotation/doc/index.html
usr/lib/R/site-library/StructuralVariantAnnotation/doc/vignettes.R
usr/lib/R/site-library/StructuralVariantAnnotation/doc/vignettes.Rmd
usr/lib/R/site-library/StructuralVariantAnnotation/extdata
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/COLO829.10X.longranger.largeSVs.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/COLO829.nanopore.sniffles.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/COLO829T.purple.sv.ann.vcf.gz
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/MT.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/breakdancer-1.4.5.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/breakend.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_nanoSV_truth_overlap.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_somatic_gridss.vcf.gz
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_somatic_manta.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/colo829_somatic_novobreak.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/crest.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/delly-0.6.8.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss-missingPartner.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss-na12878.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss.bedpe
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/gridss.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/manta-0.29.6.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/manta-1.1.1.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/multipleAltSVs.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/na12878_chr22_Sudmunt2015.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/na12878_chr22_crest.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/na12878_chr22_hydra.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/pindel-0.2.5b6.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/representations.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/simple.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/tigra-0.3.7.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/truthset_somaticSVs_COLO829.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/unnamed.bedpe
usr/lib/R/site-library/StructuralVariantAnnotation/extdata/vcf4.2.example.sv.vcf
usr/lib/R/site-library/StructuralVariantAnnotation/help
usr/lib/R/site-library/StructuralVariantAnnotation/help/AnIndex
usr/lib/R/site-library/StructuralVariantAnnotation/help/StructuralVariantAnnotation.rdb
usr/lib/R/site-library/StructuralVariantAnnotation/help/StructuralVariantAnnotation.rdx
usr/lib/R/site-library/StructuralVariantAnnotation/help/aliases.rds
usr/lib/R/site-library/StructuralVariantAnnotation/help/paths.rds
usr/lib/R/site-library/StructuralVariantAnnotation/html
usr/lib/R/site-library/StructuralVariantAnnotation/html/00Index.html
usr/lib/R/site-library/StructuralVariantAnnotation/html/R.css
usr/share
usr/share/doc
usr/share/doc/r-bioc-structuralvariantannotation
usr/share/doc/r-bioc-structuralvariantannotation/changelog.Debian.gz
usr/share/doc/r-bioc-structuralvariantannotation/copyright