r-bioc-txdbmaker (1.2.1+ds-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-sid
- Repository
- https://deb.debian.org/debian
- Codename
- sid
- Component
- main
- Source
- none
- Architecture
- s390x
- Section
- gnu-r
- Priority
- optional
- Maintainer
- Debian R Packages Maintainers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 3.1 kB
- Size expected
- 740.6 kB
- Size actual
- 740.6 kB
- Size match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-biocgenerics
- r-bioc-s4vectors
- r-bioc-genomeinfodb (>= 1.39.9)
- r-bioc-genomicranges
- r-bioc-genomicfeatures
- r-cran-httr
- r-cran-rjson
- r-cran-dbi
- r-cran-rsqlite (>= 2.0)
- r-bioc-iranges
- r-bioc-ucsc.utils
- r-bioc-annotationdbi
- r-bioc-biobase
- r-bioc-biocio
- r-bioc-rtracklayer
- r-bioc-biomart (>= 2.59.1)
Suggested packages
Recommended additional packages
Description
Tools for making TxDb objects from genomic annotations
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | ee324e4a…476c459d | |
| SHA-1 | 75451c6c…b38e8a9c | |
| SHA-256 | 19479ebf…ac5186fa | |
| SHA-512 | 31fe34ca…67a22bee |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/txdbmaker usr/lib/R/site-library/txdbmaker/DESCRIPTION usr/lib/R/site-library/txdbmaker/INDEX usr/lib/R/site-library/txdbmaker/Meta usr/lib/R/site-library/txdbmaker/Meta/Rd.rds usr/lib/R/site-library/txdbmaker/Meta/features.rds usr/lib/R/site-library/txdbmaker/Meta/hsearch.rds usr/lib/R/site-library/txdbmaker/Meta/links.rds usr/lib/R/site-library/txdbmaker/Meta/nsInfo.rds usr/lib/R/site-library/txdbmaker/Meta/package.rds usr/lib/R/site-library/txdbmaker/Meta/vignette.rds usr/lib/R/site-library/txdbmaker/NAMESPACE usr/lib/R/site-library/txdbmaker/NEWS usr/lib/R/site-library/txdbmaker/R usr/lib/R/site-library/txdbmaker/R/txdbmaker usr/lib/R/site-library/txdbmaker/R/txdbmaker.rdb usr/lib/R/site-library/txdbmaker/R/txdbmaker.rdx usr/lib/R/site-library/txdbmaker/doc usr/lib/R/site-library/txdbmaker/doc/index.html usr/lib/R/site-library/txdbmaker/doc/txdbmaker.R usr/lib/R/site-library/txdbmaker/doc/txdbmaker.Rmd usr/lib/R/site-library/txdbmaker/extdata usr/lib/R/site-library/txdbmaker/extdata/GFF3_files usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/GCF_000020065.1_ASM2006v1_genomic.gff usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/TheCanonicalGene_v1.gff3 usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/TheCanonicalGene_v2.gff3 usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/a.gff3 usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/a.sqlite usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/dmel-1000-r5.11.filtered.gff usr/lib/R/site-library/txdbmaker/extdata/GFF3_files/dmel-1000-r5.11.filtered.sqlite usr/lib/R/site-library/txdbmaker/extdata/GTF_files usr/lib/R/site-library/txdbmaker/extdata/GTF_files/GCA_002204515.1_AaegL5.0_genomic.gtf.gz usr/lib/R/site-library/txdbmaker/extdata/GTF_files/GCA_002204515.1_AaegL5.0_genomic.sqlite usr/lib/R/site-library/txdbmaker/extdata/GTF_files/test1.gtf usr/lib/R/site-library/txdbmaker/extdata/README.txt usr/lib/R/site-library/txdbmaker/extdata/sacCer2_sgdGene_txdb.sqlite usr/lib/R/site-library/txdbmaker/help usr/lib/R/site-library/txdbmaker/help/AnIndex usr/lib/R/site-library/txdbmaker/help/aliases.rds usr/lib/R/site-library/txdbmaker/help/paths.rds usr/lib/R/site-library/txdbmaker/help/txdbmaker.rdb usr/lib/R/site-library/txdbmaker/help/txdbmaker.rdx usr/lib/R/site-library/txdbmaker/html usr/lib/R/site-library/txdbmaker/html/00Index.html usr/lib/R/site-library/txdbmaker/html/R.css usr/lib/R/site-library/txdbmaker/scripts usr/lib/R/site-library/txdbmaker/scripts/make_TxDbs.R usr/lib/R/site-library/txdbmaker/scripts/make_tRNAFDb.R usr/lib/R/site-library/txdbmaker/txdb-template usr/lib/R/site-library/txdbmaker/txdb-template/DESCRIPTION usr/lib/R/site-library/txdbmaker/txdb-template/NAMESPACE usr/lib/R/site-library/txdbmaker/txdb-template/R usr/lib/R/site-library/txdbmaker/txdb-template/R/zzz.R usr/lib/R/site-library/txdbmaker/txdb-template/man usr/lib/R/site-library/txdbmaker/txdb-template/man/package.Rd usr/lib/R/site-library/txdbmaker/unitTests usr/lib/R/site-library/txdbmaker/unitTests/test_makeTxDb.R usr/lib/R/site-library/txdbmaker/unitTests/test_makeTxDbFromBiomart.R usr/lib/R/site-library/txdbmaker/unitTests/test_makeTxDbFromGFF.R usr/lib/R/site-library/txdbmaker/unitTests/test_makeTxDbFromGRanges.R usr/lib/R/site-library/txdbmaker/unitTests/test_makeTxDbFromUCSC.R usr/share usr/share/doc usr/share/doc/r-bioc-txdbmaker usr/share/doc/r-bioc-txdbmaker/changelog.Debian.gz usr/share/doc/r-bioc-txdbmaker/copyright