rsem (1.3.3+dfsg-3+b1)

Details

Core information at a glance

Distribution
debian
Origin
debian-sid
Repository
https://deb.debian.org/debian
Codename
sid
Component
main
Source
rsem (1.3.3+dfsg-3)
Architecture
s390x
Section
science
Priority
optional
Maintainer
Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
37.2 kB
Size expected
36.1 MB
Size actual
36.1 MB
Size match

Dependencies

Required package dependencies

  • libc6 (>= 2.34)
  • libgcc-s1 (>= 3.0)
  • libhts3t64 (>= 1.17)
  • libstdc++6 (>= 13.1)
  • perl:any
  • r-base-core
  • bowtie | bowtie2
  • python3

Suggested packages

Recommended additional packages

  • r-bioc-ebseq
  • hisat2

Description

RNA-Seq by Expectation-Maximization

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD50ef55f0a…b03d8f7c
SHA-15fc19a16…5953c7d7
SHA-25615efc1e9…ef670fde
SHA-512ef346d3f…f80ecfd3

Contents

Files and directories included

.
usr
usr/bin
usr/bin/convert-sam-for-rsem
usr/bin/extract-transcript-to-gene-map-from-trinity
usr/bin/rsem-bam2readdepth
usr/bin/rsem-bam2wig
usr/bin/rsem-build-read-index
usr/bin/rsem-calculate-credibility-intervals
usr/bin/rsem-calculate-expression
usr/bin/rsem-control-fdr
usr/bin/rsem-extract-reference-transcripts
usr/bin/rsem-gen-transcript-plots
usr/bin/rsem-generate-data-matrix
usr/bin/rsem-generate-ngvector
usr/bin/rsem-get-unique
usr/bin/rsem-gff3-to-gtf
usr/bin/rsem-parse-alignments
usr/bin/rsem-plot-model
usr/bin/rsem-plot-transcript-wiggles
usr/bin/rsem-prepare-reference
usr/bin/rsem-preref
usr/bin/rsem-refseq-extract-primary-assembly
usr/bin/rsem-run-em
usr/bin/rsem-run-gibbs
usr/bin/rsem-sam-validator
usr/bin/rsem-scan-for-paired-end-reads
usr/bin/rsem-simulate-reads
usr/bin/rsem-synthesis-reference-transcripts
usr/bin/rsem-tbam2gbam
usr/bin/rsem_perl_utils.pm
usr/share
usr/share/doc
usr/share/doc/rsem
usr/share/doc/rsem/README.md.gz
usr/share/doc/rsem/README.test
usr/share/doc/rsem/WHAT_IS_NEW.gz
usr/share/doc/rsem/changelog.Debian.gz
usr/share/doc/rsem/changelog.Debian.s390x.gz
usr/share/doc/rsem/cnt_file_description.txt
usr/share/doc/rsem/copyright
usr/share/doc/rsem/examples
usr/share/doc/rsem/examples/mouse_ref_building_from_transcripts.tar.gz
usr/share/doc/rsem/model_file_description.txt.gz
usr/share/doc/rsem/run-unit-test
usr/share/man
usr/share/man/man1
usr/share/man/man1/convert-sam-for-rsem.1.gz
usr/share/man/man1/rsem-bam2wig.1.gz
usr/share/man/man1/rsem-calculate-expression.1.gz
usr/share/man/man1/rsem-control-fdr.1.gz
usr/share/man/man1/rsem-generate-ngvector.1.gz
usr/share/man/man1/rsem-gff3-to-gtf.1.gz
usr/share/man/man1/rsem-plot-transcript-wiggles.1.gz
usr/share/man/man1/rsem-prepare-reference.1.gz
usr/share/man/man1/rsem-run-ebseq.1.gz
usr/share/man/man1/rsem-simulate-reads.1.gz
usr/share/perl5
usr/share/perl5/rsem_perl_utils.pm