snippy (4.6.0+dfsg-5)

Details

Core information at a glance

Distribution: debian
Origin: debian-sid
Repository: https://deb.debian.org/debian
Codename: sid
Component: main
Source: none
Architecture: s390x
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 100 B
Size expected: 26.9 kB
Size actual: 26.9 kB
Size match

Dependencies

Required package dependencies

perl:any
any2fasta
bcftools
bedtools
bwa
freebayes (>= 1.3.6-2)
libbio-perl-perl
libvcflib-tools
minimap2
parallel
samclip
samtools
seqtk
snp-sites
snpeff
vt

Suggested packages

Recommended additional packages

None

Description

rapid haploid variant calling and core genome alignment

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	55c31257…628e8d09	55c31257…628e8d09
SHA-1	Not provided	6ad10c1a…982f2c0f
SHA-256	d7321afb…4c4a20ab	d7321afb…4c4a20ab
SHA-512	Not provided	323f0769…03050516

Files and directories included

.
usr
usr/bin
usr/bin/snippy
usr/bin/snippy-clean_full_aln
usr/bin/snippy-core
usr/bin/snippy-multi
usr/bin/snippy-vcf_extract_subs
usr/bin/snippy-vcf_report
usr/bin/snippy-vcf_to_tab
usr/share
usr/share/doc
usr/share/doc/snippy
usr/share/doc/snippy/README.Debian
usr/share/doc/snippy/changelog.Debian.gz
usr/share/doc/snippy/copyright
usr/share/doc/snippy/etc
usr/share/doc/snippy/etc/Mtb_NC_000962.3_mask.bed.gz
usr/share/perl5
usr/share/perl5/Snippy
usr/share/perl5/Snippy/Version.pm
usr/share/snippy
usr/share/snippy/etc
usr/share/snippy/etc/snpeff.config