snippy (4.6.0+dfsg-6)

Details

Core information at a glance

Distribution: debian
Origin: debian-sid
Repository: https://deb.debian.org/debian
Codename: sid
Component: main
Source: none
Architecture: s390x
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 100 B
Size expected: 27 kB
Size actual: 27 kB
Size match

Dependencies

Required package dependencies

perl:any
any2fasta
bcftools
bedtools
bwa
freebayes (>= 1.3.6-2)
libbio-perl-perl
libvcflib-tools
minimap2
parallel
samclip
samtools
seqtk
snp-sites
snpeff
vt

Suggested packages

Recommended additional packages

None

Description

rapid haploid variant calling and core genome alignment

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	6b751103…4a30b3d9	6b751103…4a30b3d9
SHA-1	Not provided	545ae850…86cf2e41
SHA-256	b00865b6…6527c0f1	b00865b6…6527c0f1
SHA-512	Not provided	c9bd89be…f8515d42

Files and directories included

.
usr
usr/bin
usr/bin/snippy
usr/bin/snippy-clean_full_aln
usr/bin/snippy-core
usr/bin/snippy-multi
usr/bin/snippy-vcf_extract_subs
usr/bin/snippy-vcf_report
usr/bin/snippy-vcf_to_tab
usr/share
usr/share/doc
usr/share/doc/snippy
usr/share/doc/snippy/README.Debian
usr/share/doc/snippy/changelog.Debian.gz
usr/share/doc/snippy/copyright
usr/share/doc/snippy/etc
usr/share/doc/snippy/etc/Mtb_NC_000962.3_mask.bed.gz
usr/share/perl5
usr/share/perl5/Snippy
usr/share/perl5/Snippy/Version.pm
usr/share/snippy
usr/share/snippy/etc
usr/share/snippy/etc/snpeff.config