stacks (2.68+dfsg-2)

Details

Core information at a glance

Distribution: debian
Origin: debian-sid
Repository: https://deb.debian.org/debian
Codename: sid
Component: main
Source: none
Architecture: s390x
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 6.3 kB
Size expected: 1.2 MB
Size actual: 1.2 MB
Size match

Dependencies

Required package dependencies

libc6 (>= 2.38)
libgcc-s1 (>= 3.0)
libgomp1 (>= 6)
libhts3t64 (>= 1.17)
libstdc++6 (>= 14)
zlib1g (>= 1:1.2.6)
samtools
libdbi-perl
bsdextrautils
python3

Suggested packages

Recommended additional packages

Description

pipeline for building loci from short-read DNA sequences

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual
MD5	79436b7c…a84f386a	79436b7c…a84f386a
SHA-1	Not provided	a1ccde23…2d410cf1
SHA-256	710771b8…faf60331	710771b8…faf60331
SHA-512	Not provided	49abc9dd…4e757f0f

Files and directories included

.
usr
usr/bin
usr/bin/stacks
usr/libexec
usr/libexec/debian-med
usr/libexec/debian-med/bin
usr/libexec/stacks
usr/libexec/stacks/bin
usr/libexec/stacks/bin/clone_filter
usr/libexec/stacks/bin/cstacks
usr/libexec/stacks/bin/denovo_map.pl
usr/libexec/stacks/bin/gstacks
usr/libexec/stacks/bin/kmer_filter
usr/libexec/stacks/bin/phasedstacks
usr/libexec/stacks/bin/populations
usr/libexec/stacks/bin/process_radtags
usr/libexec/stacks/bin/process_shortreads
usr/libexec/stacks/bin/ref_map.pl
usr/libexec/stacks/bin/sstacks
usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus
usr/libexec/stacks/bin/stacks-dist-extract
usr/libexec/stacks/bin/stacks-gdb
usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage
usr/libexec/stacks/bin/stacks-integrate-alignments
usr/libexec/stacks/bin/stacks-private-alleles
usr/libexec/stacks/bin/stacks-samtools-tview
usr/libexec/stacks/bin/tsv2bam
usr/libexec/stacks/bin/ustacks
usr/share
usr/share/doc
usr/share/doc/stacks
usr/share/doc/stacks/README.Debian
usr/share/doc/stacks/changelog.Debian.gz
usr/share/doc/stacks/changelog.gz
usr/share/doc/stacks/copyright
usr/libexec/debian-med/bin/clone_filter
usr/libexec/debian-med/bin/cstacks
usr/libexec/debian-med/bin/denovo_map
usr/libexec/debian-med/bin/denovo_map.pl
usr/libexec/debian-med/bin/gstacks
usr/libexec/debian-med/bin/kmer_filter
usr/libexec/debian-med/bin/phasedstacks
usr/libexec/debian-med/bin/populations
usr/libexec/debian-med/bin/process_radtags
usr/libexec/debian-med/bin/process_shortreads
usr/libexec/debian-med/bin/ref_map
usr/libexec/debian-med/bin/ref_map.pl
usr/libexec/debian-med/bin/sstacks
usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus
usr/libexec/debian-med/bin/stacks-dist-extract
usr/libexec/debian-med/bin/stacks-gdb
usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage
usr/libexec/debian-med/bin/stacks-integrate-alignments
usr/libexec/debian-med/bin/stacks-private-alleles
usr/libexec/debian-med/bin/stacks-samtools-tview
usr/libexec/debian-med/bin/tsv2bam
usr/libexec/debian-med/bin/ustacks
usr/libexec/stacks/bin/denovo_map
usr/libexec/stacks/bin/ref_map