transdecoder-doc (6.0.0-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-sid
- Repository
- https://deb.debian.org/debian
- Codename
- sid
- Component
- main
- Source
- transdecoder
- Architecture
- s390x
- Section
- doc
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 275.4 kB
- Size expected
- 46.8 MB
- Size actual
- 46.8 MB
- Size match
Suggested packages
Recommended additional packages
- None
Description
find coding regions within transcripts
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 9cc17938…4951c3d3 | |
| SHA-1 | 63ddbe8c…efea6fdc | |
| SHA-256 | c95f34dc…ceff0a9c | |
| SHA-512 | db3481f5…76c6c5a6 |
Contents
Files and directories included
. usr usr/lib usr/lib/transdecoder usr/lib/transdecoder/sample_data usr/lib/transdecoder/sample_data/Makefile usr/lib/transdecoder/sample_data/README usr/lib/transdecoder/sample_data/README.md usr/lib/transdecoder/sample_data/cufflinks_example usr/lib/transdecoder/sample_data/cufflinks_example/Makefile usr/lib/transdecoder/sample_data/cufflinks_example/cleanme.pl usr/lib/transdecoder/sample_data/cufflinks_example/mini_Pfam-A.hmm usr/lib/transdecoder/sample_data/cufflinks_example/mini_Pfam-A.hmm.gz usr/lib/transdecoder/sample_data/cufflinks_example/mini_Pfam-A.hmm.h3f usr/lib/transdecoder/sample_data/cufflinks_example/mini_Pfam-A.hmm.h3i usr/lib/transdecoder/sample_data/cufflinks_example/mini_Pfam-A.hmm.h3m usr/lib/transdecoder/sample_data/cufflinks_example/mini_Pfam-A.hmm.h3p usr/lib/transdecoder/sample_data/cufflinks_example/mini_sprot.db.pep usr/lib/transdecoder/sample_data/cufflinks_example/mini_sprot.db.pep.gz usr/lib/transdecoder/sample_data/cufflinks_example/runMe.sh usr/lib/transdecoder/sample_data/cufflinks_example/test.genome.fasta usr/lib/transdecoder/sample_data/cufflinks_example/test.genome.fasta.gz usr/lib/transdecoder/sample_data/cufflinks_example/test.tophat.sam.gz usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.bed usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder.bed usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder.cds usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder.genome.bed usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder.genome.gff3 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder.gff3 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder.pep usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/copy_to_final_outputfile.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/get_longest_orfs.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/hexamer_scores.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/make_final_bed.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/make_final_cds.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/make_final_pep.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/nr.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/pipeliner.545.cmds usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/revise_starts.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/score_cdss.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/select_best_orfs.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/top_train_select.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_TDpredict/train_start_PWM.ea2e6d2c45eb49b5dff0421300ea91a6.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_longorfs usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_longorfs/TD.longorfs.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_longorfs/base_freqs_file.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/__checkpoints_longorfs/pipeliner.216.cmds usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/base_freqs.dat usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/blast_db.dmnd usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/blastp.outfmt6 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/hexamer.scores usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds.best_candidates.gff3 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds.best_candidates.gff3.revised_starts.gff3 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds.scores usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_500_longest usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.cds.top_longest_5000.nr usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.gff3 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/longest_orfs.pep usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/pfam.domtblout usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.+.features usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.+.pwm usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.-.features usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.-.pwm usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.alt_start_scores usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.+.features usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.+.pwm usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.feature.scores usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.feature.scores.roc usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.feature.scores.roc.auc usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.feature.scores.roc.auc.plot.Rscript usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.feature.scores.roc.auc.plot.pdf usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.enhanced.feature.scores.roc.plot.pdf usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.feature.scores usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.feature.scores.roc usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.feature.scores.roc.auc usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.feature.scores.roc.auc.plot.Rscript usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.feature.scores.roc.auc.plot.pdf usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement.feature.scores.roc.plot.pdf usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/aucplot.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/built_init.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/enhance.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/enhanced_aucplot.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/enhanced_roc_features.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/enhanced_rocplot.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/enhanced_score_features.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/pipeliner.565.cmds usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/roc_features.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/rocplot.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/score_features.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/seqlogo.+.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/seqlogo.-.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.fasta.transdecoder_dir/start_refinement_1777902191_checkpoints/seqlogo.enhanced.+.ok usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.gff3 usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.gtf usr/lib/transdecoder/sample_data/cufflinks_example/transcripts.gtf.gz usr/lib/transdecoder/sample_data/pasa_example usr/lib/transdecoder/sample_data/pasa_example/Makefile usr/lib/transdecoder/sample_data/pasa_example/cleanme.pl usr/lib/transdecoder/sample_data/pasa_example/genome.fasta usr/lib/transdecoder/sample_data/pasa_example/genome.fasta.gz usr/lib/transdecoder/sample_data/pasa_example/pasa.gene_trans_map.txt usr/lib/transdecoder/sample_data/pasa_example/pasa.transdecoder_workdir usr/lib/transdecoder/sample_data/pasa_example/pasa.transdecoder_workdir/pasa_assemblies.fasta.transdecoder.bed usr/lib/transdecoder/sample_data/pasa_example/pasa.transdecoder_workdir/pasa_assemblies.fasta.transdecoder.cds 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