transdecoder (5.7.1-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-sid
- Repository
- https://deb.debian.org/debian
- Codename
- sid
- Component
- main
- Source
- none
- Architecture
- s390x
- Section
- science
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 666 B
- Size expected
- 205.3 kB
- Size actual
- 205.3 kB
- Size match
Description
find coding regions within RNA transcript sequences
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 23ce96a3…1fc34116 | |
| SHA-1 | 76832a29…69ca0723 | |
| SHA-256 | 5614216f…bf65ad20 | |
| SHA-512 | 53ee217d…6d502c38 |
Contents
Files and directories included
. usr usr/bin usr/lib usr/lib/transdecoder usr/lib/transdecoder/PerlLib usr/lib/transdecoder/PerlLib/DelimParser.pm usr/lib/transdecoder/PerlLib/Fasta_reader.pm usr/lib/transdecoder/PerlLib/Fasta_retriever.pm usr/lib/transdecoder/PerlLib/GFF3_utils2.pm usr/lib/transdecoder/PerlLib/GTF.pm usr/lib/transdecoder/PerlLib/GTF_utils2.pm usr/lib/transdecoder/PerlLib/Gene_obj.pm usr/lib/transdecoder/PerlLib/Longest_orf.pm usr/lib/transdecoder/PerlLib/Nuc_translator.pm usr/lib/transdecoder/PerlLib/Overlap_piler.pm usr/lib/transdecoder/PerlLib/PWM.pm usr/lib/transdecoder/PerlLib/Pipeliner.pm usr/lib/transdecoder/PerlLib/Process_cmd.pm usr/lib/transdecoder/PerlLib/overlapping_nucs.ph usr/lib/transdecoder/TransDecoder.LongOrfs usr/lib/transdecoder/TransDecoder.Predict usr/lib/transdecoder/util usr/lib/transdecoder/util/PWM usr/lib/transdecoder/util/PWM/README.md usr/lib/transdecoder/util/PWM/__deprecated usr/lib/transdecoder/util/PWM/__deprecated/build_atgPWM.pl usr/lib/transdecoder/util/PWM/__deprecated/build_pwm.pl usr/lib/transdecoder/util/PWM/__deprecated/score_atgPWM.pl usr/lib/transdecoder/util/PWM/build_atgPWM_+-.pl usr/lib/transdecoder/util/PWM/compute_AUC.pl usr/lib/transdecoder/util/PWM/deplete_feature_noise.pl usr/lib/transdecoder/util/PWM/feature_scores_to_ROC.pl usr/lib/transdecoder/util/PWM/feature_scoring.+-.pl usr/lib/transdecoder/util/PWM/make_seqLogo.Rscript usr/lib/transdecoder/util/PWM/plot_ROC.Rscript usr/lib/transdecoder/util/PWM/simulate_feature_seq_from_PWM.pl usr/lib/transdecoder/util/__pwm_tests usr/lib/transdecoder/util/__pwm_tests/cleanMe.sh usr/lib/transdecoder/util/__pwm_tests/longest_orfs.cds.top_longest_5000.nr80.gz usr/lib/transdecoder/util/__pwm_tests/runMe.sh usr/lib/transdecoder/util/bin usr/lib/transdecoder/util/bin/.hidden usr/lib/transdecoder/util/cdna_alignment_orf_to_genome_orf.pl usr/lib/transdecoder/util/compute_base_probs.pl usr/lib/transdecoder/util/exclude_similar_proteins.pl usr/lib/transdecoder/util/fasta_prot_checker.pl usr/lib/transdecoder/util/ffindex_resume.pl usr/lib/transdecoder/util/gene_list_to_gff.pl usr/lib/transdecoder/util/get_FL_accs.pl usr/lib/transdecoder/util/get_longest_ORF_per_transcript.pl usr/lib/transdecoder/util/get_top_longest_fasta_entries.pl usr/lib/transdecoder/util/gff3_file_to_bed.pl usr/lib/transdecoder/util/gff3_file_to_proteins.pl usr/lib/transdecoder/util/gff3_gene_to_gtf_format.pl usr/lib/transdecoder/util/gtf_genome_to_cdna_fasta.pl usr/lib/transdecoder/util/gtf_to_alignment_gff3.pl usr/lib/transdecoder/util/gtf_to_bed.pl usr/lib/transdecoder/util/misc usr/lib/transdecoder/util/misc/__init__.py usr/lib/transdecoder/util/misc/get_FP_FN_scores.py usr/lib/transdecoder/util/misc/plot_indiv_seq_likelihood_profile.py usr/lib/transdecoder/util/misc/rpart_scores.Rscript usr/lib/transdecoder/util/misc/select_TD_orfs.py usr/lib/transdecoder/util/nr_ORFs_gff3.pl usr/lib/transdecoder/util/pfam_mpi.pbs usr/lib/transdecoder/util/pfam_runner.pl usr/lib/transdecoder/util/refine_gff3_group_iso_strip_utrs.pl usr/lib/transdecoder/util/refine_hexamer_scores.pl usr/lib/transdecoder/util/remove_eclipsed_ORFs.pl usr/lib/transdecoder/util/score_CDS_likelihood_all_6_frames.pl usr/lib/transdecoder/util/select_best_ORFs_per_transcript.pl usr/lib/transdecoder/util/seq_n_baseprobs_to_loglikelihood_vals.pl usr/lib/transdecoder/util/start_codon_refinement.pl usr/lib/transdecoder/util/train_start_PWM.pl usr/lib/transdecoder/util/uri_unescape.pl usr/share usr/share/doc usr/share/doc/transdecoder usr/share/doc/transdecoder/changelog.Debian.gz usr/share/doc/transdecoder/changelog.gz usr/share/doc/transdecoder/copyright usr/bin/TransDecoder.LongOrfs usr/bin/TransDecoder.Predict usr/lib/transdecoder/util/__pwm_tests/pasa_assemblies.fasta.gz