umis-examples (1.0.9-2)
Details
Core information at a glance
- Distribution
- debian
- Origin
- debian-sid
- Repository
- https://deb.debian.org/debian
- Codename
- sid
- Component
- main
- Source
- umis
- Architecture
- s390x
- Section
- science
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 397 B
- Size expected
- 175.2 kB
- Size actual
- 175.2 kB
- Size match
Dependencies
Required package dependencies
- None
Suggested packages
Recommended additional packages
- None
Description
tools for processing UMI RNA-tag data (examples)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 47a17048…5e33cccb | |
| SHA-1 | 4e64424e…a44c6fa5 | |
| SHA-256 | ea2eabd9…5ceda2cb | |
| SHA-512 | bfc08f60…b7c910d1 |
Contents
Files and directories included
. usr usr/share usr/share/doc usr/share/doc/umis usr/share/doc/umis/examples usr/share/doc/umis/examples/10XGenomics usr/share/doc/umis/examples/10XGenomics/read_I5_sample_index_read_8_base.fastq usr/share/doc/umis/examples/10XGenomics/read_I7_cell_barcode_read_14_base.fastq usr/share/doc/umis/examples/10XGenomics/transcript_umi_reads.fastq usr/share/doc/umis/examples/10XGenomics/transform.json usr/share/doc/umis/examples/10XGenomics_v2 usr/share/doc/umis/examples/10XGenomics_v2/test_7_I1.fastq usr/share/doc/umis/examples/10XGenomics_v2/test_7_R1.fastq usr/share/doc/umis/examples/10XGenomics_v2/test_7_R2.fastq.gz usr/share/doc/umis/examples/10XGenomics_v2/transform.json usr/share/doc/umis/examples/BATseq usr/share/doc/umis/examples/BATseq/SRR1558183_1.fastq usr/share/doc/umis/examples/BATseq/SRR1558183_2.fastq.gz usr/share/doc/umis/examples/BATseq/transform.json usr/share/doc/umis/examples/CEL-Seq usr/share/doc/umis/examples/CEL-Seq/SRP036633_1.fastq usr/share/doc/umis/examples/CEL-Seq/SRP036633_1.fastq.gz usr/share/doc/umis/examples/CEL-Seq/SRP036633_2.fastq usr/share/doc/umis/examples/CEL-Seq/SRP036633_2.fastq.gz usr/share/doc/umis/examples/CEL-Seq/SRP036633_expected.fastq usr/share/doc/umis/examples/CEL-Seq/SRP036633_trimmed.fastq usr/share/doc/umis/examples/CEL-Seq/SRP048838_1.fastq usr/share/doc/umis/examples/CEL-Seq/SRP048838_2.fastq usr/share/doc/umis/examples/CEL-Seq/test.bash usr/share/doc/umis/examples/CEL-Seq/transform.json usr/share/doc/umis/examples/CEL-Seq2 usr/share/doc/umis/examples/CEL-Seq2/SRR3195918_5.fastq usr/share/doc/umis/examples/CEL-Seq2/SRR3196080.fastq usr/share/doc/umis/examples/CEL-Seq2/transform.json usr/share/doc/umis/examples/CEL-seq2_I7sample_Indexed usr/share/doc/umis/examples/CEL-seq2_I7sample_Indexed/CEL-seq2.R1.fastq usr/share/doc/umis/examples/CEL-seq2_I7sample_Indexed/CEL-seq2.R2.fastq usr/share/doc/umis/examples/CEL-seq2_I7sample_Indexed/transform.json usr/share/doc/umis/examples/DropSeq usr/share/doc/umis/examples/DropSeq/SRR1873278_1.fastq usr/share/doc/umis/examples/DropSeq/SRR1873278_2.fastq usr/share/doc/umis/examples/DropSeq/transform.json usr/share/doc/umis/examples/Klein-inDrop usr/share/doc/umis/examples/Klein-inDrop/klein-v3_R1.fq.gz usr/share/doc/umis/examples/Klein-inDrop/klein-v3_R2.fq.gz usr/share/doc/umis/examples/Klein-inDrop/klein-v3_R3.fq.gz usr/share/doc/umis/examples/Klein-inDrop/klein-v3_R4.fq.gz usr/share/doc/umis/examples/Klein-inDrop/sample-index.txt usr/share/doc/umis/examples/Klein-inDrop/test14.fq.gz usr/share/doc/umis/examples/Klein-inDrop/test_cell_demultiplex.fq usr/share/doc/umis/examples/Klein-inDrop/transform.json usr/share/doc/umis/examples/MARS-Seq usr/share/doc/umis/examples/MARS-Seq/SRP035326.fastq usr/share/doc/umis/examples/MARS-Seq/SRP035326_5.fastq usr/share/doc/umis/examples/MARS-Seq/SRP035326_expected.fastq usr/share/doc/umis/examples/MARS-Seq/SRP063520.fastq usr/share/doc/umis/examples/MARS-Seq/transform_SRP035326.json usr/share/doc/umis/examples/MARS-Seq/transform_SRP063520.json usr/share/doc/umis/examples/SCRB-Seq usr/share/doc/umis/examples/SCRB-Seq/scrbseq_R1.fastq.gz usr/share/doc/umis/examples/SCRB-Seq/scrbseq_R2.fastq.gz usr/share/doc/umis/examples/SCRB-Seq/transform.json usr/share/doc/umis/examples/STRT-Seq usr/share/doc/umis/examples/STRT-Seq/SRP022764_ESCell_1_ATTAGAC_single.fastq usr/share/doc/umis/examples/STRT-Seq/SRP022764_transform.json usr/share/doc/umis/examples/STRT-Seq/SRP045452_1772058148_A01.fastq usr/share/doc/umis/examples/STRT-Seq/SRP045452_transform.json usr/share/doc/umis/examples/STRT-Seq/dual_index_transform.json usr/share/doc/umis/examples/STRT-Seq/dualindex_example_1.fastq usr/share/doc/umis/examples/STRT-Seq/dualindex_example_2.fastq usr/share/doc/umis/examples/STRT-Seq/three_file_1.fastq usr/share/doc/umis/examples/STRT-Seq/three_file_2.fastq usr/share/doc/umis/examples/STRT-Seq/three_file_3.fastq usr/share/doc/umis/examples/STRT-Seq/three_file_transform.json usr/share/doc/umis/examples/SpatialTranscriptomics usr/share/doc/umis/examples/SpatialTranscriptomics/Sample_R1.fastq usr/share/doc/umis/examples/SpatialTranscriptomics/Sample_R2.fastq usr/share/doc/umis/examples/SpatialTranscriptomics/transform.json usr/share/doc/umis/examples/SureCell usr/share/doc/umis/examples/SureCell/K562_R1.fastq usr/share/doc/umis/examples/SureCell/K562_R2.fastq usr/share/doc/umis/examples/SureCell/barcodes.txt usr/share/doc/umis/examples/SureCell/transform.json usr/share/doc/umis/examples/bamtag usr/share/doc/umis/examples/bamtag/bamtag-xstag.bam usr/share/doc/umis/examples/bamtag/bamtag.bam usr/share/doc/umis/examples/bamtag/bamtag.sam usr/share/doc/umis/examples/inDrop usr/share/doc/umis/examples/inDrop/README.md usr/share/doc/umis/examples/inDrop/SRR1784317_1.fastq usr/share/doc/umis/examples/inDrop/SRR1784317_2.fastq usr/share/doc/umis/examples/inDrop/transform.json usr/share/doc/umis/examples/paired-with-umi-read usr/share/doc/umis/examples/paired-with-umi-read/fq_1.fq usr/share/doc/umis/examples/paired-with-umi-read/fq_2.fq usr/share/doc/umis/examples/paired-with-umi-read/transform.json usr/share/doc/umis/examples/paired-with-umi-read/umi.fq usr/share/doc/umis/examples/tagcount usr/share/doc/umis/examples/tagcount/cb-histogram.txt usr/share/doc/umis/examples/tagcount/cb-histogram.txt.gz usr/share/doc/umis/examples/tagcount/gene-map.tsv usr/share/doc/umis/examples/tagcount/tagcount-example.csv usr/share/doc/umis/examples/tagcount/tagcount.bam usr/share/doc/umis/examples/tagcount/tagcount.bam.bai usr/share/doc/umis/examples/tagcount/tagcount.sam usr/share/doc/umis/run-unit-test usr/share/doc/umis/test.sh.gz usr/share/doc/umis/tests usr/share/doc/umis/tests/correct usr/share/doc/umis/tests/correct/AAAGCCAC.fq usr/share/doc/umis/tests/correct/AGGGGGGG-ATATNNNN.fq usr/share/doc/umis/tests/correct/GGGGGGGG-ACTCNNNN.fq usr/share/doc/umis/tests/correct/test-bamtag-xstag.sam usr/share/doc/umis/tests/correct/test01.fq usr/share/doc/umis/tests/correct/test02.fq usr/share/doc/umis/tests/correct/test03.fq usr/share/doc/umis/tests/correct/test04.fq usr/share/doc/umis/tests/correct/test05.fq usr/share/doc/umis/tests/correct/test06.fq usr/share/doc/umis/tests/correct/test07.fq usr/share/doc/umis/tests/correct/test08.fq.gz usr/share/doc/umis/tests/correct/test09.fq usr/share/doc/umis/tests/correct/test10.fq usr/share/doc/umis/tests/correct/test11.fq usr/share/doc/umis/tests/correct/test12_1.fq usr/share/doc/umis/tests/correct/test12_2.fq usr/share/doc/umis/tests/correct/test13.fq.gz usr/share/doc/umis/tests/correct/test14.fq.gz usr/share/doc/umis/tests/correct/test15-cb-histogram.txt.gz usr/share/doc/umis/tests/correct/test15-mb-histogram.txt.gz usr/share/doc/umis/tests/correct/test15.fq.gz usr/share/doc/umis/tests/correct/test16-umi-histogram.txt usr/share/doc/umis/tests/correct/test17-tagcount.txt usr/share/doc/umis/tests/correct/test18-tagcount-matrixmarket.txt usr/share/doc/umis/tests/correct/test18-tagcount-matrixmarket.txt.colnames usr/share/doc/umis/tests/correct/test18-tagcount-matrixmarket.txt.rownames usr/share/doc/umis/tests/correct/test19-tagcount-cbhistogram.txt usr/share/doc/umis/tests/correct/test20-tagcount-cbhistogram.txt usr/share/doc/umis/tests/correct/test21-filtered.fq usr/share/doc/umis/tests/correct/test21.fq usr/share/doc/umis/tests/correct/test22-fasttagcount-cbhistogram.txt usr/share/doc/umis/tests/correct/test22-fasttagcount-umi-matrix.txt usr/share/doc/umis/tests/correct/test23-tagcount-cbhistogram-genemap.txt usr/share/doc/umis/tests/correct/test24-fasttagcount-cbhistogram-genemap.txt usr/share/doc/umis/tests/correct/test25.mtx usr/share/doc/umis/tests/correct/test25.mtx.colnames usr/share/doc/umis/tests/correct/test25.mtx.rownames usr/share/doc/umis/tests/correct/test_bamtag.sam usr/share/doc/umis/tests/correct/test_streaming_bamtag.sam usr/share/doc/umis-examples usr/share/doc/umis-examples/changelog.Debian.gz usr/share/doc/umis-examples/changelog.gz usr/share/doc/umis-examples/copyright usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/umis-examples