libmaus2-dev (2.0.813+ds-5+b1)
Details
Core information at a glance
- Distribution
- kali
- Origin
- kali-last-snapshot
- Repository
- https://http.kali.org/kali
- Codename
- kali-last-snapshot
- Component
- main
- Source
- libmaus2 (2.0.813+ds-5)
- Architecture
- amd64
- Section
- libdevel
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 72.9 kB
- Size expected
- 4.7 MB
- Size actual
- 4.7 MB
- Size match
Suggested packages
Recommended additional packages
- None
Description
collection of data structures and algorithms for biobambam (devel)
Tags
Package classification tags
devel::library
role::devel-lib
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 26dad7d8…377ba94f | |
| SHA-1 | ef3f126b…0fd6df74 | |
| SHA-256 | 91507cce…90a6f107 | |
| SHA-512 | 3b2e8828…8ba83dd1 |
Contents
Files and directories included
. usr usr/include usr/include/libmaus2 usr/include/libmaus2/LibMausConfig.hpp usr/include/libmaus2/LibMausWindows.hpp usr/include/libmaus2/aio usr/include/libmaus2/aio/ArrayFile.hpp usr/include/libmaus2/aio/ArrayFileContainer.hpp usr/include/libmaus2/aio/ArrayFileSet.hpp usr/include/libmaus2/aio/ArrayInputStream.hpp usr/include/libmaus2/aio/ArrayInputStreamBuffer.hpp usr/include/libmaus2/aio/ArrayInputStreamFactory.hpp usr/include/libmaus2/aio/Buffer.hpp usr/include/libmaus2/aio/BufferedOutput.hpp usr/include/libmaus2/aio/CharArrayInputStream.hpp usr/include/libmaus2/aio/CharArrayInputStreamBuffer.hpp usr/include/libmaus2/aio/CharArrayOutputStream.hpp usr/include/libmaus2/aio/CharArrayOutputStreamBuffer.hpp usr/include/libmaus2/aio/CircularBuffer.hpp usr/include/libmaus2/aio/CircularWrapper.hpp usr/include/libmaus2/aio/CompactDecoder4.hpp usr/include/libmaus2/aio/CompactEncoder4.hpp usr/include/libmaus2/aio/ConcatInputStream.hpp usr/include/libmaus2/aio/ConcatInputStreamBuffer.hpp usr/include/libmaus2/aio/CountOutputStream.hpp usr/include/libmaus2/aio/CountOutputStreamBuffer.hpp usr/include/libmaus2/aio/DebugLineOutputStream.hpp usr/include/libmaus2/aio/DebugLineOutputStreamBuffer.hpp usr/include/libmaus2/aio/FStreamInputOutputStreamFactory.hpp usr/include/libmaus2/aio/FileFragment.hpp usr/include/libmaus2/aio/FileRemoval.hpp usr/include/libmaus2/aio/GenericPeeker.hpp usr/include/libmaus2/aio/GetLength.hpp usr/include/libmaus2/aio/IFStreamInputStreamFactory.hpp usr/include/libmaus2/aio/IStreamWrapper.hpp usr/include/libmaus2/aio/InputOutputStream.hpp usr/include/libmaus2/aio/InputOutputStreamFactory.hpp usr/include/libmaus2/aio/InputOutputStreamFactoryContainer.hpp usr/include/libmaus2/aio/InputOutputStreamInstance.hpp usr/include/libmaus2/aio/InputOutputStreamPointerWrapper.hpp usr/include/libmaus2/aio/InputOutputStreamWrapper.hpp usr/include/libmaus2/aio/InputStream.hpp usr/include/libmaus2/aio/InputStreamFactory.hpp usr/include/libmaus2/aio/InputStreamFactoryContainer.hpp usr/include/libmaus2/aio/InputStreamInstance.hpp usr/include/libmaus2/aio/InputStreamInstanceAtOffset.hpp usr/include/libmaus2/aio/InputStreamObject.hpp usr/include/libmaus2/aio/InputStreamObjectAllocator.hpp usr/include/libmaus2/aio/InputStreamObjectTypeInfo.hpp usr/include/libmaus2/aio/InputStreamPointerWrapper.hpp usr/include/libmaus2/aio/InputStreamWrapper.hpp usr/include/libmaus2/aio/LineSplittingPosixFdOutputStream.hpp usr/include/libmaus2/aio/LineSplittingPosixFdOutputStreamBuffer.hpp usr/include/libmaus2/aio/MemoryBackedOutputStream.hpp usr/include/libmaus2/aio/MemoryBackedOutputStreamBuffer.hpp usr/include/libmaus2/aio/MemoryFile.hpp usr/include/libmaus2/aio/MemoryFileAdapter.hpp usr/include/libmaus2/aio/MemoryFileContainer.hpp usr/include/libmaus2/aio/MemoryInputOutputStream.hpp usr/include/libmaus2/aio/MemoryInputOutputStreamBuffer.hpp usr/include/libmaus2/aio/MemoryInputOutputStreamFactory.hpp usr/include/libmaus2/aio/MemoryInputStream.hpp usr/include/libmaus2/aio/MemoryInputStreamBuffer.hpp usr/include/libmaus2/aio/MemoryInputStreamFactory.hpp usr/include/libmaus2/aio/MemoryOutputStream.hpp usr/include/libmaus2/aio/MemoryOutputStreamBuffer.hpp usr/include/libmaus2/aio/MemoryOutputStreamFactory.hpp usr/include/libmaus2/aio/NamedTemporaryFile.hpp usr/include/libmaus2/aio/NamedTemporaryFileAllocator.hpp usr/include/libmaus2/aio/NamedTemporaryFileTypeInfo.hpp usr/include/libmaus2/aio/OFStreamOutputStreamFactory.hpp usr/include/libmaus2/aio/OutputStream.hpp usr/include/libmaus2/aio/OutputStreamFactory.hpp usr/include/libmaus2/aio/OutputStreamFactoryContainer.hpp usr/include/libmaus2/aio/OutputStreamInstance.hpp usr/include/libmaus2/aio/OutputStreamInstanceArray.hpp usr/include/libmaus2/aio/OutputStreamPointerWrapper.hpp usr/include/libmaus2/aio/OutputStreamWrapper.hpp usr/include/libmaus2/aio/PairFileDecoder.hpp usr/include/libmaus2/aio/PosixFdInput.hpp usr/include/libmaus2/aio/PosixFdInputOutputStream.hpp usr/include/libmaus2/aio/PosixFdInputOutputStreamBuffer.hpp usr/include/libmaus2/aio/PosixFdInputOutputStreamFactory.hpp usr/include/libmaus2/aio/PosixFdInputStream.hpp usr/include/libmaus2/aio/PosixFdInputStreamBuffer.hpp usr/include/libmaus2/aio/PosixFdInputStreamFactory.hpp usr/include/libmaus2/aio/PosixFdInputWrapper.hpp usr/include/libmaus2/aio/PosixFdOutputStream.hpp usr/include/libmaus2/aio/PosixFdOutputStreamBuffer.hpp usr/include/libmaus2/aio/PosixFdOutputStreamFactory.hpp usr/include/libmaus2/aio/PutOutputIterator.hpp usr/include/libmaus2/aio/ReorderConcatGenericInput.hpp usr/include/libmaus2/aio/SecrecyCache.hpp usr/include/libmaus2/aio/SecrecyInputStreamFactory.hpp usr/include/libmaus2/aio/SecrecyOutputStreamFactory.hpp usr/include/libmaus2/aio/SerialisedPeeker.hpp usr/include/libmaus2/aio/SingleFileFragmentMerge.hpp usr/include/libmaus2/aio/SizeMonitorThread.hpp usr/include/libmaus2/aio/SkipConcatInputStream.hpp usr/include/libmaus2/aio/SkipConcatInputStreamBuffer.hpp usr/include/libmaus2/aio/SplitWriter.hpp usr/include/libmaus2/aio/StreamLock.hpp usr/include/libmaus2/aio/SynchronousFastReaderBase.hpp usr/include/libmaus2/aio/SynchronousGenericInput.hpp usr/include/libmaus2/aio/SynchronousGenericOutput.hpp usr/include/libmaus2/aio/TempFileArray.hpp usr/include/libmaus2/aio/URLObject.hpp usr/include/libmaus2/aio/WriteCompactArray.hpp usr/include/libmaus2/alignment usr/include/libmaus2/alignment/BamLineInfo.hpp usr/include/libmaus2/alignment/FMIIntervalComparator.hpp usr/include/libmaus2/alignment/FactorMatchInfo.hpp usr/include/libmaus2/alignment/FactorMatchInfoPosComparator.hpp usr/include/libmaus2/alignment/KmerInfo.hpp usr/include/libmaus2/alignment/KmerTuple.hpp usr/include/libmaus2/alignment/SimpleLocalAligner.hpp usr/include/libmaus2/arch usr/include/libmaus2/arch/CacheLineSize.hpp usr/include/libmaus2/arch/I386Features.hpp usr/include/libmaus2/arch/PageSize.hpp usr/include/libmaus2/autoarray usr/include/libmaus2/autoarray/AutoArray.hpp usr/include/libmaus2/autoarray/AutoArray2d.hpp usr/include/libmaus2/autoarray/AutoArrayAllocType.hpp usr/include/libmaus2/autoarray/AutoArrayMultiMap.hpp usr/include/libmaus2/avl usr/include/libmaus2/avl/AVLSet.hpp usr/include/libmaus2/avl/AtomicAVLMap.hpp usr/include/libmaus2/avl/AtomicAVLPtrValueMap.hpp usr/include/libmaus2/avl/AtomicAVLSet.hpp usr/include/libmaus2/bambam usr/include/libmaus2/bambam/AdapterFilter.hpp usr/include/libmaus2/bambam/AdapterOffsetStrand.hpp usr/include/libmaus2/bambam/AlignmentValidity.hpp usr/include/libmaus2/bambam/BamAccessor.hpp usr/include/libmaus2/bambam/BamAlignment.hpp usr/include/libmaus2/bambam/BamAlignmentComparator.hpp usr/include/libmaus2/bambam/BamAlignmentDecoder.hpp usr/include/libmaus2/bambam/BamAlignmentDecoderBase.hpp usr/include/libmaus2/bambam/BamAlignmentDecoderFactory.hpp usr/include/libmaus2/bambam/BamAlignmentDecoderInfo.hpp usr/include/libmaus2/bambam/BamAlignmentEncoderBase.hpp usr/include/libmaus2/bambam/BamAlignmentExpungeCallback.hpp usr/include/libmaus2/bambam/BamAlignmentFilter.hpp usr/include/libmaus2/bambam/BamAlignmentFixedSizeData.hpp usr/include/libmaus2/bambam/BamAlignmentFreeList.hpp usr/include/libmaus2/bambam/BamAlignmentHashComparator.hpp usr/include/libmaus2/bambam/BamAlignmentHeapComparator.hpp usr/include/libmaus2/bambam/BamAlignmentInputCallbackBam.hpp usr/include/libmaus2/bambam/BamAlignmentInputCallbackSnappy.hpp usr/include/libmaus2/bambam/BamAlignmentInputPositionCallbackNull.hpp usr/include/libmaus2/bambam/BamAlignmentInputPositionUpdateCallback.hpp usr/include/libmaus2/bambam/BamAlignmentListNode.hpp usr/include/libmaus2/bambam/BamAlignmentNameComparator.hpp usr/include/libmaus2/bambam/BamAlignmentNameHIComparator.hpp usr/include/libmaus2/bambam/BamAlignmentNameLexicographicComparator.hpp usr/include/libmaus2/bambam/BamAlignmentPairFreeList.hpp usr/include/libmaus2/bambam/BamAlignmentPairListNode.hpp usr/include/libmaus2/bambam/BamAlignmentPosComparator.hpp usr/include/libmaus2/bambam/BamAlignmentPrinter.hpp usr/include/libmaus2/bambam/BamAlignmentReadGroupFilter.hpp usr/include/libmaus2/bambam/BamAlignmentReg2Bin.hpp usr/include/libmaus2/bambam/BamAlignmentSnappyInput.hpp usr/include/libmaus2/bambam/BamAlignmentSortingCircularHashEntryOverflow.hpp usr/include/libmaus2/bambam/BamAlignmentTagComparator.hpp usr/include/libmaus2/bambam/BamAlignmentTagOnlyComparator.hpp usr/include/libmaus2/bambam/BamAuxFilterVector.hpp usr/include/libmaus2/bambam/BamAuxSortingBuffer.hpp usr/include/libmaus2/bambam/BamAuxSortingBufferEntry.hpp usr/include/libmaus2/bambam/BamBlockWriterBase.hpp usr/include/libmaus2/bambam/BamBlockWriterBaseFactory.hpp usr/include/libmaus2/bambam/BamCat.hpp usr/include/libmaus2/bambam/BamCatHeader.hpp usr/include/libmaus2/bambam/BamDecoder.hpp usr/include/libmaus2/bambam/BamDefaultAdapters.hpp usr/include/libmaus2/bambam/BamEntryContainer.hpp usr/include/libmaus2/bambam/BamFlagBase.hpp usr/include/libmaus2/bambam/BamFormatAuxiliary.hpp usr/include/libmaus2/bambam/BamHeader.hpp usr/include/libmaus2/bambam/BamHeaderLowMem.hpp usr/include/libmaus2/bambam/BamHeaderParserState.hpp usr/include/libmaus2/bambam/BamHeaderParserStateBase.hpp usr/include/libmaus2/bambam/BamHeaderReadGroupInterface.hpp usr/include/libmaus2/bambam/BamHeaderUpdate.hpp usr/include/libmaus2/bambam/BamIndex.hpp usr/include/libmaus2/bambam/BamIndexBin.hpp usr/include/libmaus2/bambam/BamIndexBinChunk.hpp usr/include/libmaus2/bambam/BamIndexGenerator.hpp usr/include/libmaus2/bambam/BamIndexLinear.hpp usr/include/libmaus2/bambam/BamIndexLinearChunk.hpp usr/include/libmaus2/bambam/BamIndexMetaInfo.hpp usr/include/libmaus2/bambam/BamIndexRef.hpp usr/include/libmaus2/bambam/BamMergeCoordinate.hpp usr/include/libmaus2/bambam/BamMergeQueryName.hpp usr/include/libmaus2/bambam/BamMergeTemplate.hpp usr/include/libmaus2/bambam/BamMultiAlignmentDecoderFactory.hpp usr/include/libmaus2/bambam/BamNumExtractor.hpp usr/include/libmaus2/bambam/BamNumericalIndexBase.hpp usr/include/libmaus2/bambam/BamNumericalIndexDecoder.hpp usr/include/libmaus2/bambam/BamNumericalIndexGenerator.hpp usr/include/libmaus2/bambam/BamParallelRewrite.hpp usr/include/libmaus2/bambam/BamPeeker.hpp usr/include/libmaus2/bambam/BamRange.hpp usr/include/libmaus2/bambam/BamRangeDecoder.hpp usr/include/libmaus2/bambam/BamRangeParser.hpp usr/include/libmaus2/bambam/BamRawDecoder.hpp usr/include/libmaus2/bambam/BamRawPeeker.hpp usr/include/libmaus2/bambam/BamSeqEncodeTable.hpp usr/include/libmaus2/bambam/BamStreamingMarkDuplicates.hpp usr/include/libmaus2/bambam/BamStreamingMarkDuplicatesSupport.hpp usr/include/libmaus2/bambam/BamToFastqOutputFileSet.hpp usr/include/libmaus2/bambam/BamWriter.hpp usr/include/libmaus2/bambam/BgzfDeflateOutputCallbackBamIndex.hpp usr/include/libmaus2/bambam/BgzfDeflateOutputCallbackBamNumericalIndex.hpp usr/include/libmaus2/bambam/ChecksumsFactory.hpp usr/include/libmaus2/bambam/ChecksumsInterface.hpp usr/include/libmaus2/bambam/ChecksumsInterfaceAllocator.hpp usr/include/libmaus2/bambam/ChecksumsInterfaceTypeInfo.hpp usr/include/libmaus2/bambam/Chromosome.hpp usr/include/libmaus2/bambam/ChromosomeVectorMerge.hpp usr/include/libmaus2/bambam/CigarDecoder.hpp usr/include/libmaus2/bambam/CigarOperation.hpp usr/include/libmaus2/bambam/CigarRunLengthDecoder.hpp usr/include/libmaus2/bambam/CigarStringParser.hpp usr/include/libmaus2/bambam/CigarStringReader.hpp usr/include/libmaus2/bambam/CircularHashCollatingBamDecoder.hpp usr/include/libmaus2/bambam/CollatingBamDecoderAlignmentInputCallback.hpp usr/include/libmaus2/bambam/CompactReadEndsBase.hpp usr/include/libmaus2/bambam/CompactReadEndsComparator.hpp usr/include/libmaus2/bambam/CramRange.hpp usr/include/libmaus2/bambam/DecoderBase.hpp usr/include/libmaus2/bambam/DupMarkBase.hpp usr/include/libmaus2/bambam/DupSetCallback.hpp usr/include/libmaus2/bambam/DupSetCallbackSet.hpp usr/include/libmaus2/bambam/DupSetCallbackSharedVector.hpp usr/include/libmaus2/bambam/DupSetCallbackStream.hpp usr/include/libmaus2/bambam/DupSetCallbackVector.hpp usr/include/libmaus2/bambam/DuplicationMetrics.hpp usr/include/libmaus2/bambam/EncoderBase.hpp usr/include/libmaus2/bambam/GeneFlatFile.hpp usr/include/libmaus2/bambam/GeneFlatFileEntry.hpp usr/include/libmaus2/bambam/HeaderLine.hpp usr/include/libmaus2/bambam/MdNmRecalculation.hpp usr/include/libmaus2/bambam/MdStringComputationContext.hpp usr/include/libmaus2/bambam/MergeQueueElement.hpp usr/include/libmaus2/bambam/OptName.hpp usr/include/libmaus2/bambam/OptNameReader.hpp usr/include/libmaus2/bambam/OpticalComparator.hpp usr/include/libmaus2/bambam/PileQualityVectorElement.hpp usr/include/libmaus2/bambam/PileVectorElement.hpp usr/include/libmaus2/bambam/ProgramHeaderLineSet.hpp usr/include/libmaus2/bambam/ReadEnds.hpp usr/include/libmaus2/bambam/ReadEndsBase.hpp usr/include/libmaus2/bambam/ReadEndsBaseLongHashAttributeComparator.hpp usr/include/libmaus2/bambam/ReadEndsBasePointerComparator.hpp usr/include/libmaus2/bambam/ReadEndsBaseShortHashAttributeComparator.hpp usr/include/libmaus2/bambam/ReadEndsBlockDecoderBase.hpp usr/include/libmaus2/bambam/ReadEndsBlockDecoderBaseCollection.hpp usr/include/libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfo.hpp usr/include/libmaus2/bambam/ReadEndsBlockDecoderBaseCollectionInfoBase.hpp usr/include/libmaus2/bambam/ReadEndsBlockIndexSet.hpp usr/include/libmaus2/bambam/ReadEndsContainer.hpp usr/include/libmaus2/bambam/ReadEndsContainerBase.hpp usr/include/libmaus2/bambam/ReadEndsFreeList.hpp usr/include/libmaus2/bambam/ReadEndsHeapPairComparator.hpp usr/include/libmaus2/bambam/ReadEndsListNode.hpp usr/include/libmaus2/bambam/ReadEndsStreamDecoder.hpp usr/include/libmaus2/bambam/ReadEndsStreamDecoderBase.hpp usr/include/libmaus2/bambam/ReadEndsStreamDecoderFileBase.hpp usr/include/libmaus2/bambam/ReadGroup.hpp usr/include/libmaus2/bambam/RgInfo.hpp usr/include/libmaus2/bambam/SamDecoder.hpp usr/include/libmaus2/bambam/SamDecoderWrapper.hpp usr/include/libmaus2/bambam/SamEncoder.hpp usr/include/libmaus2/bambam/SamInfo.hpp usr/include/libmaus2/bambam/SamInfoAllocator.hpp usr/include/libmaus2/bambam/SamInfoBase.hpp usr/include/libmaus2/bambam/SamInfoTypeInfo.hpp usr/include/libmaus2/bambam/SamPrintableTable.hpp usr/include/libmaus2/bambam/SamZPrintableTable.hpp usr/include/libmaus2/bambam/Scram.h usr/include/libmaus2/bambam/ScramDecoder.hpp usr/include/libmaus2/bambam/ScramEncoder.hpp usr/include/libmaus2/bambam/ScramInputContainer.hpp usr/include/libmaus2/bambam/SeqChksumPrimeNumbers.hpp usr/include/libmaus2/bambam/SeqChksumUpdateContext.hpp usr/include/libmaus2/bambam/SnappyAlignmentMergeInput.hpp usr/include/libmaus2/bambam/SortedFragDecoder.hpp usr/include/libmaus2/bambam/StrCmpNum.hpp usr/include/libmaus2/bambam/StrCmpNumRecode.hpp usr/include/libmaus2/bambam/parallel usr/include/libmaus2/bambam/parallel/AddDuplicationMetricsInterface.hpp usr/include/libmaus2/bambam/parallel/AddPendingCompressBufferWriteInterface.hpp usr/include/libmaus2/bambam/parallel/AddWritePendingBgzfBlockInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentBlockCompressPackage.hpp usr/include/libmaus2/bambam/parallel/AlignmentBlockCompressPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentBuffer.hpp usr/include/libmaus2/bambam/parallel/AlignmentBufferAllocator.hpp usr/include/libmaus2/bambam/parallel/AlignmentBufferHeapComparator.hpp usr/include/libmaus2/bambam/parallel/AlignmentBufferReinsertInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentBufferReturnInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentBufferTypeInfo.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewriteBuffer.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferAllocator.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferCoordinateComparator.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferPosComparator.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewriteBufferReinsertForFillingInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewritePosMergeSortPackage.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortBaseSortPackage.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortContext.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortContextBaseBlockSortedInterface.hpp usr/include/libmaus2/bambam/parallel/AlignmentRewritePosSortContextMergePackageFinished.hpp usr/include/libmaus2/bambam/parallel/BamBlockIndexingBlockFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/BamBlockIndexingWorkPackage.hpp usr/include/libmaus2/bambam/parallel/BamBlockIndexingWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/BamBlockIndexingWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingBlockFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackage.hpp usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/BamBlockNumericalIndexingWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/BaseMergeSortWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/BaseSortWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/BaseSortWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/BgzfInflateZStreamBaseGetInterface.hpp usr/include/libmaus2/bambam/parallel/BgzfInflateZStreamBaseReturnInterface.hpp usr/include/libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackage.hpp usr/include/libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/BgzfLinearMemCompressWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/BgzfOutputBlockWrittenInterface.hpp usr/include/libmaus2/bambam/parallel/BlockCompressPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/BlockMergeControl.hpp usr/include/libmaus2/bambam/parallel/BlockMergeControlTypeBase.hpp usr/include/libmaus2/bambam/parallel/BlockSortControl.hpp usr/include/libmaus2/bambam/parallel/BlockSortControlBase.hpp usr/include/libmaus2/bambam/parallel/ChecksumsInterfaceGetInterface.hpp usr/include/libmaus2/bambam/parallel/ChecksumsInterfacePutInterface.hpp usr/include/libmaus2/bambam/parallel/CompressBuffer.hpp usr/include/libmaus2/bambam/parallel/CompressBufferAllocator.hpp usr/include/libmaus2/bambam/parallel/CompressBufferHeapComparator.hpp usr/include/libmaus2/bambam/parallel/CompressionPendingElement.hpp usr/include/libmaus2/bambam/parallel/ControlInputInfo.hpp usr/include/libmaus2/bambam/parallel/CramEncodingSupportData.hpp usr/include/libmaus2/bambam/parallel/CramEncodingWorkPackage.hpp usr/include/libmaus2/bambam/parallel/CramEncodingWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/CramEncodingWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/CramInterface.h usr/include/libmaus2/bambam/parallel/CramOutputBlock.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumComputedInterface.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumPackage.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockChecksumPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockIdComparator.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockSizeComparator.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackage.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackageFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/CramOutputBlockWritePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/CramPassPointerObject.hpp usr/include/libmaus2/bambam/parallel/CramPassPointerObjectAllocator.hpp usr/include/libmaus2/bambam/parallel/CramPassPointerObjectComparator.hpp usr/include/libmaus2/bambam/parallel/CramPassPointerObjectTypeInfo.hpp usr/include/libmaus2/bambam/parallel/DecompressBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/DecompressBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/DecompressBlockWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/DecompressBlocksWorkPackage.hpp usr/include/libmaus2/bambam/parallel/DecompressBlocksWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/DecompressBlocksWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlock.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlockAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlockAllocator.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlockHeapComparator.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlockReorderHeapComparator.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlockReturnInterface.hpp usr/include/libmaus2/bambam/parallel/DecompressedBlockTypeInfo.hpp usr/include/libmaus2/bambam/parallel/DecompressedPendingObject.hpp usr/include/libmaus2/bambam/parallel/DecompressedPendingObjectHeapComparator.hpp usr/include/libmaus2/bambam/parallel/FastQInputDesc.hpp usr/include/libmaus2/bambam/parallel/FastQInputDescBase.hpp usr/include/libmaus2/bambam/parallel/FastqInputPackage.hpp usr/include/libmaus2/bambam/parallel/FastqInputPackageAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/FastqInputPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FastqInputPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FastqParsePackage.hpp usr/include/libmaus2/bambam/parallel/FastqParsePackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FastqParsePackageFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/FastqParsePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FastqToBamControl.hpp usr/include/libmaus2/bambam/parallel/FastqToBamControlInputBlockHeapComparator.hpp usr/include/libmaus2/bambam/parallel/FastqToBamControlSubReadPending.hpp usr/include/libmaus2/bambam/parallel/FastqToBamControlSubReadPendingHeapComparator.hpp usr/include/libmaus2/bambam/parallel/FileChecksumBlockFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/FileChecksumBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FileChecksumBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FileChecksumBlockWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsContainerFlushWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBuffer.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferAllocator.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortPackage.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferBaseSortWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferFragment.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferHeapComparator.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortPackage.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferMergeSortWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferNameComparator.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitch.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferPointerTypeSwitchHelper.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferPosComparator.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferQueryNameComparator.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferReorderWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteFragmentCompleteInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteReadEndsWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteUpdateInterval.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackage.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferRewriteWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortContext.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextBaseBlockSortedInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortContextMergePackageFinished.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferSortFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/FragmentAlignmentBufferTypeInfo.hpp usr/include/libmaus2/bambam/parallel/GenericInputBamParseObject.hpp usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackageBlockParsedInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputBamParseWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputBase.hpp usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDecompressedBlockReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageMemInputBlockReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputBgzfDecompressionWorkSubBlockDecompressionFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputBlock.hpp usr/include/libmaus2/bambam/parallel/GenericInputBlockAllocator.hpp usr/include/libmaus2/bambam/parallel/GenericInputBlockFillResult.hpp usr/include/libmaus2/bambam/parallel/GenericInputBlockSubBlockInfo.hpp usr/include/libmaus2/bambam/parallel/GenericInputBlockTypeInfo.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockCompressionWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackageBlockWrittenInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlockWritePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlocksWritePackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlBlocksWritePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlCompressionPending.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlCompressionPendingHeapComparator.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlGetCompressorInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlMergeBlockFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlMergeHeapEntry.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlMergeRequeue.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlPutCompressorInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReadAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReadWorkPackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReadWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReadWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlReorderWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlSetMergeStallSlotInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlStreamInfo.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlSubBlockPending.hpp usr/include/libmaus2/bambam/parallel/GenericInputControlSubBlockPendingHeapComparator.hpp usr/include/libmaus2/bambam/parallel/GenericInputHeapComparator.hpp usr/include/libmaus2/bambam/parallel/GenericInputMergeDecompressedBlockReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkPackage.hpp usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/GenericInputMergeWorkRequest.hpp usr/include/libmaus2/bambam/parallel/GenericInputSingleData.hpp usr/include/libmaus2/bambam/parallel/GenericInputSingleDataBamParseInfo.hpp usr/include/libmaus2/bambam/parallel/GetBgzfDeflateZStreamBaseInterface.hpp usr/include/libmaus2/bambam/parallel/InputBlock.hpp usr/include/libmaus2/bambam/parallel/InputBlockAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/InputBlockAllocator.hpp usr/include/libmaus2/bambam/parallel/InputBlockReturnInterface.hpp usr/include/libmaus2/bambam/parallel/InputBlockTypeInfo.hpp usr/include/libmaus2/bambam/parallel/InputBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/InputBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/InputBlockWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/MemInputBlock.hpp usr/include/libmaus2/bambam/parallel/MergeSortWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackage.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsContainerFlushWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/ParseBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/ParseBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/ParseInfo.hpp usr/include/libmaus2/bambam/parallel/ParseInfoHeaderCompleteCallback.hpp usr/include/libmaus2/bambam/parallel/ParsePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/ParsedBlockAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/ParsedBlockStallInterface.hpp usr/include/libmaus2/bambam/parallel/PushBackSpace.hpp usr/include/libmaus2/bambam/parallel/PutBgzfDeflateZStreamBaseInterface.hpp usr/include/libmaus2/bambam/parallel/ReadEndsContainerAllocator.hpp usr/include/libmaus2/bambam/parallel/ReadEndsContainerFreeListInterface.hpp usr/include/libmaus2/bambam/parallel/ReadEndsContainerTypeInfo.hpp usr/include/libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp usr/include/libmaus2/bambam/parallel/RefIdInterval.hpp usr/include/libmaus2/bambam/parallel/RequeReadInterface.hpp usr/include/libmaus2/bambam/parallel/ReturnBgzfOutputBufferInterface.hpp usr/include/libmaus2/bambam/parallel/ReturnCompressionPendingElementInterface.hpp usr/include/libmaus2/bambam/parallel/ReturnRewriteBufferInterface.hpp usr/include/libmaus2/bambam/parallel/RewriteBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/RewriteBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/RewritePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/SamEncoderObject.hpp usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackage.hpp usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackageWrapper.hpp usr/include/libmaus2/bambam/parallel/SamEncodingWorkPackageWrapperReturnInterface.hpp usr/include/libmaus2/bambam/parallel/SamParseDecompressedBlockFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/SamParseFragmentParsedInterface.hpp usr/include/libmaus2/bambam/parallel/SamParseGetSamInfoInterface.hpp usr/include/libmaus2/bambam/parallel/SamParsePending.hpp usr/include/libmaus2/bambam/parallel/SamParsePendingHeapComparator.hpp usr/include/libmaus2/bambam/parallel/SamParsePutSamInfoInterface.hpp usr/include/libmaus2/bambam/parallel/SamParseWorkPackage.hpp usr/include/libmaus2/bambam/parallel/SamParseWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/SamParseWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/ScramCramEncoding.hpp usr/include/libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObject.hpp usr/include/libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/SmallLinearBlockCompressionPendingObjectHeapComparator.hpp usr/include/libmaus2/bambam/parallel/SortControl.hpp usr/include/libmaus2/bambam/parallel/SortFinishedInterface.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentAddPendingInterface.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackage.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockFragmentWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/ValidateBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/ValidatePackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/ValidationFragment.hpp usr/include/libmaus2/bambam/parallel/WriteBlockWorkPackage.hpp usr/include/libmaus2/bambam/parallel/WriteBlockWorkPackageDispatcher.hpp usr/include/libmaus2/bambam/parallel/WriteBlockWorkPackageReturnInterface.hpp usr/include/libmaus2/bambam/parallel/WritePendingObject.hpp usr/include/libmaus2/bambam/parallel/WritePendingObjectHeapComparator.hpp usr/include/libmaus2/bed usr/include/libmaus2/bed/BED.hpp usr/include/libmaus2/bitbtree usr/include/libmaus2/bitbtree/bitbtree.hpp usr/include/libmaus2/bitio usr/include/libmaus2/bitio/ArrayDecode.hpp usr/include/libmaus2/bitio/BitIO.hpp usr/include/libmaus2/bitio/BitIOInput.hpp usr/include/libmaus2/bitio/BitIOOutput.hpp usr/include/libmaus2/bitio/BitSet.hpp usr/include/libmaus2/bitio/BitStreamFileDecoder.hpp usr/include/libmaus2/bitio/BitVector.hpp usr/include/libmaus2/bitio/BitVectorConcat.hpp usr/include/libmaus2/bitio/BitVectorInput.hpp usr/include/libmaus2/bitio/BitVectorOutput.hpp usr/include/libmaus2/bitio/BitWriter.hpp usr/include/libmaus2/bitio/BufferIterator.hpp usr/include/libmaus2/bitio/CheckedBitWriter.hpp usr/include/libmaus2/bitio/Clz.hpp usr/include/libmaus2/bitio/CompactArray.hpp usr/include/libmaus2/bitio/CompactArrayBase.hpp usr/include/libmaus2/bitio/CompactArrayWriter.hpp usr/include/libmaus2/bitio/CompactArrayWriterFile.hpp usr/include/libmaus2/bitio/CompactDecoderBuffer.hpp usr/include/libmaus2/bitio/CompactOffsetArray.hpp usr/include/libmaus2/bitio/CompactOffsetOneArray.hpp usr/include/libmaus2/bitio/CompactQueue.hpp usr/include/libmaus2/bitio/CompactSparseArray.hpp usr/include/libmaus2/bitio/Ctz.hpp usr/include/libmaus2/bitio/FastWriteBitWriter.hpp usr/include/libmaus2/bitio/MarkerFastWriteBitWriter.hpp usr/include/libmaus2/bitio/OutputBuffer.hpp usr/include/libmaus2/bitio/PacDecoderBuffer.hpp usr/include/libmaus2/bitio/ReverseTable.hpp usr/include/libmaus2/bitio/SignedCompactArray.hpp usr/include/libmaus2/bitio/SwapWordBitBlock.hpp usr/include/libmaus2/bitio/getBit.hpp usr/include/libmaus2/bitio/getBits.hpp usr/include/libmaus2/bitio/putBit.hpp usr/include/libmaus2/bitio/putBits.hpp usr/include/libmaus2/bitio/readElias.hpp usr/include/libmaus2/bitio/swapBitBlocksByReversal.hpp usr/include/libmaus2/btree usr/include/libmaus2/btree/btree.hpp usr/include/libmaus2/clustering usr/include/libmaus2/clustering/HashCreation.hpp usr/include/libmaus2/clustering/HashCreationBase.hpp usr/include/libmaus2/clustering/KMeans.hpp usr/include/libmaus2/clustering/KmerBase.hpp usr/include/libmaus2/clustering/ProduceEdgeRequest.hpp usr/include/libmaus2/cumfreq usr/include/libmaus2/cumfreq/DynamicCumulativeFrequencies.hpp usr/include/libmaus2/cumfreq/SlowCumFreq.hpp usr/include/libmaus2/dazzler usr/include/libmaus2/dazzler/align usr/include/libmaus2/dazzler/align/AlignmentFile.hpp usr/include/libmaus2/dazzler/align/AlignmentFileCat.hpp usr/include/libmaus2/dazzler/align/AlignmentFileConstants.hpp usr/include/libmaus2/dazzler/align/AlignmentFileDecoder.hpp usr/include/libmaus2/dazzler/align/AlignmentFileRegion.hpp usr/include/libmaus2/dazzler/align/AlignmentFileSymmetryCheck.hpp usr/include/libmaus2/dazzler/align/AlignmentSplitWriter.hpp usr/include/libmaus2/dazzler/align/AlignmentWriter.hpp usr/include/libmaus2/dazzler/align/AlignmentWriterArray.hpp usr/include/libmaus2/dazzler/align/ApproximateRun.hpp usr/include/libmaus2/dazzler/align/ApproximateRunPartContainer.hpp usr/include/libmaus2/dazzler/align/BinIndexDecoder.hpp usr/include/libmaus2/dazzler/align/CompactRunPartContainer.hpp usr/include/libmaus2/dazzler/align/DalignerIndexDecoder.hpp usr/include/libmaus2/dazzler/align/FilterUnique.hpp usr/include/libmaus2/dazzler/align/GetTransitiveStrict.hpp usr/include/libmaus2/dazzler/align/GraphCheck.hpp usr/include/libmaus2/dazzler/align/GraphDecoder.hpp usr/include/libmaus2/dazzler/align/GraphDecoderContext.hpp usr/include/libmaus2/dazzler/align/GraphDecoderContextAllocator.hpp usr/include/libmaus2/dazzler/align/GraphDecoderContextTypeInfo.hpp usr/include/libmaus2/dazzler/align/GraphEncoder.hpp usr/include/libmaus2/dazzler/align/LASToBamConverterBase.hpp usr/include/libmaus2/dazzler/align/LasFileRange.hpp usr/include/libmaus2/dazzler/align/LasIntervals.hpp usr/include/libmaus2/dazzler/align/LasMerge2.hpp usr/include/libmaus2/dazzler/align/LasRangeDecoder.hpp usr/include/libmaus2/dazzler/align/LasSort2.hpp usr/include/libmaus2/dazzler/align/LasSort2Cascade.hpp usr/include/libmaus2/dazzler/align/Overlap.hpp usr/include/libmaus2/dazzler/align/OverlapAdapter.hpp usr/include/libmaus2/dazzler/align/OverlapData.hpp usr/include/libmaus2/dazzler/align/OverlapDataInterface.hpp usr/include/libmaus2/dazzler/align/OverlapHeader.hpp usr/include/libmaus2/dazzler/align/OverlapHeapComparator.hpp usr/include/libmaus2/dazzler/align/OverlapIndexer.hpp usr/include/libmaus2/dazzler/align/OverlapIndexerBase.hpp usr/include/libmaus2/dazzler/align/OverlapInfo.hpp usr/include/libmaus2/dazzler/align/OverlapInfoIndexer.hpp usr/include/libmaus2/dazzler/align/OverlapMeta.hpp usr/include/libmaus2/dazzler/align/OverlapMetaIteratorGet.hpp usr/include/libmaus2/dazzler/align/OverlapParser.hpp usr/include/libmaus2/dazzler/align/OverlapProperCheck.hpp usr/include/libmaus2/dazzler/align/Path.hpp usr/include/libmaus2/dazzler/align/ReadIntervals.hpp usr/include/libmaus2/dazzler/align/ReadIntervalsVector.hpp usr/include/libmaus2/dazzler/align/RefMapEntry.hpp usr/include/libmaus2/dazzler/align/RefMapEntryVector.hpp usr/include/libmaus2/dazzler/align/SimpleOverlapParser.hpp usr/include/libmaus2/dazzler/align/SimpleOverlapVectorParser.hpp usr/include/libmaus2/dazzler/align/SortOrderCheck.hpp usr/include/libmaus2/dazzler/align/SortingOverlapBlockInput.hpp usr/include/libmaus2/dazzler/align/SortingOverlapOutputBuffer.hpp usr/include/libmaus2/dazzler/align/SortingOverlapOutputBufferMerger.hpp usr/include/libmaus2/dazzler/align/SubIntervalResult.hpp usr/include/libmaus2/dazzler/align/Tandem.hpp usr/include/libmaus2/dazzler/align/TandemVector.hpp usr/include/libmaus2/dazzler/align/TandemVectorPartContainer.hpp usr/include/libmaus2/dazzler/align/TraceBlock.hpp usr/include/libmaus2/dazzler/align/TraceBlockVectorCache.hpp usr/include/libmaus2/dazzler/align/TracePoint.hpp usr/include/libmaus2/dazzler/align/TrueOverlap.hpp usr/include/libmaus2/dazzler/align/TrueOverlapStats.hpp usr/include/libmaus2/dazzler/db usr/include/libmaus2/dazzler/db/DatabaseFile.hpp usr/include/libmaus2/dazzler/db/FastaInfo.hpp usr/include/libmaus2/dazzler/db/GetByteCounter.hpp usr/include/libmaus2/dazzler/db/IQVDecoder.hpp usr/include/libmaus2/dazzler/db/IndexBase.hpp usr/include/libmaus2/dazzler/db/InputBase.hpp usr/include/libmaus2/dazzler/db/InqualContainer.hpp usr/include/libmaus2/dazzler/db/OutputBase.hpp usr/include/libmaus2/dazzler/db/PartTrackContainer.hpp usr/include/libmaus2/dazzler/db/Read.hpp usr/include/libmaus2/dazzler/db/ReadContainer.hpp usr/include/libmaus2/dazzler/db/ReadLRUContainer.hpp usr/include/libmaus2/dazzler/db/SatsContainer.hpp usr/include/libmaus2/dazzler/db/StringTrackWriter.hpp usr/include/libmaus2/dazzler/db/Track.hpp usr/include/libmaus2/dazzler/db/TrackAnno.hpp usr/include/libmaus2/dazzler/db/TrackAnnoInterface.hpp usr/include/libmaus2/dazzler/db/TrackExtra.hpp usr/include/libmaus2/dazzler/stringgraph usr/include/libmaus2/dazzler/stringgraph/ContainmentInfo.hpp usr/include/libmaus2/dazzler/stringgraph/Edge.hpp usr/include/libmaus2/dazzler/stringgraph/OverlapNode.hpp usr/include/libmaus2/dazzler/stringgraph/StringGraph.hpp usr/include/libmaus2/dazzler/stringgraph/TraversalElement.hpp usr/include/libmaus2/deleter usr/include/libmaus2/deleter/Deleter.hpp usr/include/libmaus2/demangle usr/include/libmaus2/demangle/Demangle.hpp usr/include/libmaus2/digest usr/include/libmaus2/digest/CRC32.hpp usr/include/libmaus2/digest/CRC32C.hpp usr/include/libmaus2/digest/CRC32C_Core.hpp usr/include/libmaus2/digest/CRC32_Core.hpp usr/include/libmaus2/digest/DigestBase.hpp usr/include/libmaus2/digest/DigestFactory.hpp usr/include/libmaus2/digest/DigestFactoryContainer.hpp usr/include/libmaus2/digest/DigestFactoryInterface.hpp usr/include/libmaus2/digest/DigestInterface.hpp usr/include/libmaus2/digest/Digests.hpp usr/include/libmaus2/digest/MurmurHash3_x64_128.hpp usr/include/libmaus2/digest/Null.hpp usr/include/libmaus2/digest/SHA1.hpp usr/include/libmaus2/digest/SHA2_224.hpp usr/include/libmaus2/digest/SHA2_256.hpp usr/include/libmaus2/digest/SHA2_384.hpp usr/include/libmaus2/digest/SHA2_512.hpp usr/include/libmaus2/digest/SHA3_256.hpp usr/include/libmaus2/digest/md5.h usr/include/libmaus2/digest/md5.hpp usr/include/libmaus2/eta usr/include/libmaus2/eta/LinearETA.hpp usr/include/libmaus2/exception usr/include/libmaus2/exception/LibMausException.hpp usr/include/libmaus2/fastx usr/include/libmaus2/fastx/BgzfFastAIndexEntry.hpp usr/include/libmaus2/fastx/BgzfFastAIndexEntryIdComparator.hpp usr/include/libmaus2/fastx/BgzfFastAIndexEntryNameComparator.hpp usr/include/libmaus2/fastx/CharBuffer.hpp usr/include/libmaus2/fastx/CharTermTable.hpp usr/include/libmaus2/fastx/CompactFastDecoder.hpp usr/include/libmaus2/fastx/CompactFastDecoderBase.hpp usr/include/libmaus2/fastx/CompactFastEncoder.hpp usr/include/libmaus2/fastx/CompactFastQBlockGenerator.hpp usr/include/libmaus2/fastx/CompactFastQContainer.hpp usr/include/libmaus2/fastx/CompactFastQContainerDictionary.hpp usr/include/libmaus2/fastx/CompactFastQContainerDictionaryCreator.hpp usr/include/libmaus2/fastx/CompactFastQContext.hpp usr/include/libmaus2/fastx/CompactFastQDecoderBase.hpp usr/include/libmaus2/fastx/CompactFastQHeader.hpp usr/include/libmaus2/fastx/CompactFastQMultiBlockReader.hpp usr/include/libmaus2/fastx/CompactFastQSingleBlockReader.hpp usr/include/libmaus2/fastx/CompactFastReplace.hpp usr/include/libmaus2/fastx/CompactFastTerminator.hpp usr/include/libmaus2/fastx/CompactReadContainer.hpp usr/include/libmaus2/fastx/ComputeFastXIntervals.hpp usr/include/libmaus2/fastx/ConcatWriter.hpp usr/include/libmaus2/fastx/CoordinateCache.hpp usr/include/libmaus2/fastx/CoordinateCacheBiDir.hpp usr/include/libmaus2/fastx/DNAIndexMetaData.hpp usr/include/libmaus2/fastx/DNAIndexMetaDataBigBand.hpp usr/include/libmaus2/fastx/DNAIndexMetaDataBigBandBiDir.hpp usr/include/libmaus2/fastx/DNAIndexMetaDataSequence.hpp usr/include/libmaus2/fastx/FASTQEntry.hpp usr/include/libmaus2/fastx/FastABPConstants.hpp usr/include/libmaus2/fastx/FastABPGenerator.hpp usr/include/libmaus2/fastx/FastABgzfDecoder.hpp usr/include/libmaus2/fastx/FastABgzfDecoderBuffer.hpp usr/include/libmaus2/fastx/FastABgzfIndex.hpp usr/include/libmaus2/fastx/FastABgzfIndexEntry.hpp usr/include/libmaus2/fastx/FastADefinedBasesTable.hpp usr/include/libmaus2/fastx/FastAIndex.hpp usr/include/libmaus2/fastx/FastAIndexEntry.hpp usr/include/libmaus2/fastx/FastAIndexGenerator.hpp usr/include/libmaus2/fastx/FastAInfo.hpp usr/include/libmaus2/fastx/FastALineParser.hpp usr/include/libmaus2/fastx/FastALineParserLineInfo.hpp usr/include/libmaus2/fastx/FastAMapTable.hpp usr/include/libmaus2/fastx/FastAMatchTable.hpp usr/include/libmaus2/fastx/FastAReader.hpp usr/include/libmaus2/fastx/FastAReaderSplit.hpp usr/include/libmaus2/fastx/FastAStream.hpp usr/include/libmaus2/fastx/FastAStreamSet.hpp usr/include/libmaus2/fastx/FastAStreamWrapper.hpp usr/include/libmaus2/fastx/FastAToCompact4BigBand.hpp usr/include/libmaus2/fastx/FastAToCompact4BigBandBiDir.hpp usr/include/libmaus2/fastx/FastATwoBitTable.hpp usr/include/libmaus2/fastx/FastFirstToLastReverseAdapter.hpp usr/include/libmaus2/fastx/FastIDBlock.hpp usr/include/libmaus2/fastx/FastInterval.hpp usr/include/libmaus2/fastx/FastQBgzfWriter.hpp usr/include/libmaus2/fastx/FastQElement.hpp usr/include/libmaus2/fastx/FastQReader.hpp usr/include/libmaus2/fastx/FastQReaderSplit.hpp usr/include/libmaus2/fastx/FastaBPDecoder.hpp usr/include/libmaus2/fastx/FastaBPSequenceDecoder.hpp usr/include/libmaus2/fastx/FastaPeeker.hpp usr/include/libmaus2/fastx/FastqPeeker.hpp usr/include/libmaus2/fastx/FirstWhiteSpaceSlashStrip.hpp usr/include/libmaus2/fastx/FqWeightQuantiser.hpp usr/include/libmaus2/fastx/GCContent.hpp usr/include/libmaus2/fastx/GzipFileFastQReader.hpp usr/include/libmaus2/fastx/GzipStreamFastQReader.hpp usr/include/libmaus2/fastx/KmerCount.hpp usr/include/libmaus2/fastx/KmerFreqInWindowStats.hpp usr/include/libmaus2/fastx/KmerRepeatDetector.hpp usr/include/libmaus2/fastx/LineBufferFastAReader.hpp usr/include/libmaus2/fastx/MultiWordDNABitBuffer.hpp usr/include/libmaus2/fastx/NameInfo.hpp usr/include/libmaus2/fastx/NameInfoBase.hpp usr/include/libmaus2/fastx/Pattern.hpp usr/include/libmaus2/fastx/PatternBlock.hpp usr/include/libmaus2/fastx/Phred.hpp usr/include/libmaus2/fastx/QReorder.hpp usr/include/libmaus2/fastx/ReadContainer.hpp usr/include/libmaus2/fastx/RefPathLookup.hpp usr/include/libmaus2/fastx/RefPathToken.hpp usr/include/libmaus2/fastx/RefPathTokenVector.hpp usr/include/libmaus2/fastx/RefPathTokenVectorSequence.hpp usr/include/libmaus2/fastx/SingleWordDNABitBuffer.hpp usr/include/libmaus2/fastx/SlashStrip.hpp usr/include/libmaus2/fastx/SpaceTable.hpp usr/include/libmaus2/fastx/StreamFastAReader.hpp usr/include/libmaus2/fastx/StreamFastQReader.hpp usr/include/libmaus2/fastx/StreamFastReaderBase.hpp usr/include/libmaus2/fastx/SubSamplingFastReader.hpp usr/include/libmaus2/fastx/acgtnMap.hpp usr/include/libmaus2/fastx/isFastQ.hpp usr/include/libmaus2/fm usr/include/libmaus2/fm/BiIndex.hpp usr/include/libmaus2/fm/BidirectionalDnaIndexTemplate.hpp usr/include/libmaus2/fm/BidirectionalIndexInterval.hpp usr/include/libmaus2/fm/BidirectionalIndexIntervalSymbol.hpp usr/include/libmaus2/fm/DictionaryInfo.hpp usr/include/libmaus2/fm/DictionaryInfoImpCompactHuffmanWaveletTree.hpp usr/include/libmaus2/fm/FA4CompactSampledSuffixArray.hpp usr/include/libmaus2/fm/FM.hpp usr/include/libmaus2/fm/KmerCache.hpp usr/include/libmaus2/fm/MausFmToBwaConversion.hpp usr/include/libmaus2/fm/SampledISA.hpp usr/include/libmaus2/fm/SampledSA.hpp usr/include/libmaus2/gamma usr/include/libmaus2/gamma/FlaggedInterval.hpp usr/include/libmaus2/gamma/GammaDecoder.hpp usr/include/libmaus2/gamma/GammaDecoderBase.hpp usr/include/libmaus2/gamma/GammaDifferenceDecoder.hpp usr/include/libmaus2/gamma/GammaDifferenceEncoder.hpp usr/include/libmaus2/gamma/GammaDifferenceMerge.hpp usr/include/libmaus2/gamma/GammaDifferenceOutputBuffer.hpp usr/include/libmaus2/gamma/GammaEncoder.hpp usr/include/libmaus2/gamma/GammaEncoderBase.hpp usr/include/libmaus2/gamma/GammaFlaggedIntervalDecoder.hpp usr/include/libmaus2/gamma/GammaFlaggedIntervalEncoder.hpp usr/include/libmaus2/gamma/GammaFlaggedPartitionDecoder.hpp usr/include/libmaus2/gamma/GammaFlaggedPartitionEncoder.hpp usr/include/libmaus2/gamma/GammaGapDecoder.hpp usr/include/libmaus2/gamma/GammaGapEncoder.hpp usr/include/libmaus2/gamma/GammaGenericBase.hpp usr/include/libmaus2/gamma/GammaGenericClz.hpp usr/include/libmaus2/gamma/GammaGenericDecoder.hpp usr/include/libmaus2/gamma/GammaGenericEncoder.hpp usr/include/libmaus2/gamma/GammaIntervalDecoder.hpp usr/include/libmaus2/gamma/GammaIntervalEncoder.hpp usr/include/libmaus2/gamma/GammaPDDecoder.hpp usr/include/libmaus2/gamma/GammaPDEncoder.hpp usr/include/libmaus2/gamma/GammaPDIndexDecoder.hpp usr/include/libmaus2/gamma/GammaPDIndexDecoderBase.hpp usr/include/libmaus2/gamma/GammaPartitionDecoder.hpp usr/include/libmaus2/gamma/GammaPartitionEncoder.hpp usr/include/libmaus2/gamma/GammaRLDecoder.hpp usr/include/libmaus2/gamma/GammaRLEncoder.hpp usr/include/libmaus2/gamma/Interval.hpp usr/include/libmaus2/gamma/SimpleGammaDecoder.hpp usr/include/libmaus2/gamma/SimpleGammaDecoderData.hpp usr/include/libmaus2/gamma/SimpleGammaEncoder.hpp usr/include/libmaus2/gamma/SimpleGammaEncoderArray.hpp usr/include/libmaus2/gamma/SimpleGammaEncoderData.hpp usr/include/libmaus2/gamma/SparseGammaGapBlockEncoder.hpp usr/include/libmaus2/gamma/SparseGammaGapConcatDecoder.hpp usr/include/libmaus2/gamma/SparseGammaGapDecoder.hpp usr/include/libmaus2/gamma/SparseGammaGapEncoder.hpp usr/include/libmaus2/gamma/SparseGammaGapFile.hpp usr/include/libmaus2/gamma/SparseGammaGapFileIndexDecoder.hpp usr/include/libmaus2/gamma/SparseGammaGapFileIndexDecoderEntry.hpp usr/include/libmaus2/gamma/SparseGammaGapFileIndexMultiDecoder.hpp usr/include/libmaus2/gamma/SparseGammaGapFileLevelSet.hpp usr/include/libmaus2/gamma/SparseGammaGapFileSet.hpp usr/include/libmaus2/gamma/SparseGammaGapMerge.hpp usr/include/libmaus2/gamma/SparseGammaGapMultiFile.hpp usr/include/libmaus2/gamma/SparseGammaGapMultiFileLevelSet.hpp usr/include/libmaus2/gamma/SparseGammaGapMultiFileSet.hpp usr/include/libmaus2/geometry usr/include/libmaus2/geometry/IntervalTree.hpp usr/include/libmaus2/geometry/RangeSet.hpp usr/include/libmaus2/graph usr/include/libmaus2/graph/IdentityTargetProjector.hpp usr/include/libmaus2/graph/ReachableVertices.hpp usr/include/libmaus2/graph/StronglyConnectedComponents.hpp usr/include/libmaus2/graph/TopologicalSorting.hpp usr/include/libmaus2/gtf usr/include/libmaus2/gtf/BAMGTFMap.hpp usr/include/libmaus2/gtf/CDS.hpp usr/include/libmaus2/gtf/Exon.hpp usr/include/libmaus2/gtf/ExonIdOffsetComparator.hpp usr/include/libmaus2/gtf/ExonInfo.hpp usr/include/libmaus2/gtf/ExonInterval.hpp usr/include/libmaus2/gtf/ExonSubInfo.hpp usr/include/libmaus2/gtf/GTFData.hpp usr/include/libmaus2/gtf/Gene.hpp usr/include/libmaus2/gtf/GeneChrComparator.hpp usr/include/libmaus2/gtf/GeneRangeSets.hpp usr/include/libmaus2/gtf/IntervalList.hpp usr/include/libmaus2/gtf/IntervalListSet.hpp usr/include/libmaus2/gtf/RangeSets.hpp usr/include/libmaus2/gtf/Tag.hpp usr/include/libmaus2/gtf/Transcript.hpp usr/include/libmaus2/gtf/TranscriptRangeSets.hpp usr/include/libmaus2/hashing usr/include/libmaus2/hashing/CircularHash.hpp usr/include/libmaus2/hashing/ConstantStringHash.hpp usr/include/libmaus2/hashing/Crc32.hpp usr/include/libmaus2/hashing/MurmurHash3.h usr/include/libmaus2/hashing/hash.hpp usr/include/libmaus2/huffman usr/include/libmaus2/huffman/BitInputBuffer.hpp usr/include/libmaus2/huffman/CanonicalEncoder.hpp usr/include/libmaus2/huffman/CompressTable.hpp usr/include/libmaus2/huffman/DecodeTable.hpp usr/include/libmaus2/huffman/EncodeTable.hpp usr/include/libmaus2/huffman/FileStreamBaseType.hpp usr/include/libmaus2/huffman/GapDecoder.hpp usr/include/libmaus2/huffman/GapDecoderIndexBase.hpp usr/include/libmaus2/huffman/GapEncoder.hpp usr/include/libmaus2/huffman/HuffmanBase.hpp usr/include/libmaus2/huffman/HuffmanEncoderFile.hpp usr/include/libmaus2/huffman/HuffmanInputFile.hpp usr/include/libmaus2/huffman/HuffmanSorting.hpp usr/include/libmaus2/huffman/HuffmanTree.hpp usr/include/libmaus2/huffman/HuffmanTreeInnerNode.hpp usr/include/libmaus2/huffman/HuffmanTreeLeaf.hpp usr/include/libmaus2/huffman/HuffmanTreeLeafComparator.hpp usr/include/libmaus2/huffman/HuffmanTreeNode.hpp usr/include/libmaus2/huffman/IndexDecoderDataArray.hpp usr/include/libmaus2/huffman/IndexEntry.hpp usr/include/libmaus2/huffman/IndexLoader.hpp usr/include/libmaus2/huffman/IndexLoaderBase.hpp usr/include/libmaus2/huffman/IndexWriter.hpp usr/include/libmaus2/huffman/InputAdapter.hpp usr/include/libmaus2/huffman/KvInitResult.hpp usr/include/libmaus2/huffman/LFInfo.hpp usr/include/libmaus2/huffman/LFPhiPair.hpp usr/include/libmaus2/huffman/LFPhiPairDecoder.hpp usr/include/libmaus2/huffman/LFPhiPairEncoder.hpp usr/include/libmaus2/huffman/LFPhiPairLCP.hpp usr/include/libmaus2/huffman/LFPhiPairLCPDecoder.hpp usr/include/libmaus2/huffman/LFPhiPairLCPEncoder.hpp usr/include/libmaus2/huffman/LFRankLCP.hpp usr/include/libmaus2/huffman/LFRankLCPDecoder.hpp usr/include/libmaus2/huffman/LFRankLCPEncoder.hpp usr/include/libmaus2/huffman/LFRankPos.hpp usr/include/libmaus2/huffman/LFRankPosDecoder.hpp usr/include/libmaus2/huffman/LFRankPosEncoder.hpp usr/include/libmaus2/huffman/LFSetBit.hpp usr/include/libmaus2/huffman/LFSetBitDecoder.hpp usr/include/libmaus2/huffman/LFSetBitEncoder.hpp usr/include/libmaus2/huffman/LFSupportBitDecoder.hpp usr/include/libmaus2/huffman/LFSupportDecoder.hpp usr/include/libmaus2/huffman/LFSupportEncoder.hpp usr/include/libmaus2/huffman/LFSymRankPos.hpp usr/include/libmaus2/huffman/LFSymRankPosDecoder.hpp usr/include/libmaus2/huffman/LFSymRankPosEncoder.hpp usr/include/libmaus2/huffman/LFValue.hpp usr/include/libmaus2/huffman/LFValueDecoder.hpp usr/include/libmaus2/huffman/LFValueEncoder.hpp usr/include/libmaus2/huffman/OutputAdapter.hpp usr/include/libmaus2/huffman/PairAddSecond.hpp usr/include/libmaus2/huffman/RLDecoder.hpp usr/include/libmaus2/huffman/RLDecoderIndexBase.hpp usr/include/libmaus2/huffman/RLEncoder.hpp usr/include/libmaus2/huffman/RLInitType.hpp usr/include/libmaus2/huffman/RLRun.hpp usr/include/libmaus2/huffman/SymBit.hpp usr/include/libmaus2/huffman/SymBitDecoder.hpp usr/include/libmaus2/huffman/SymBitEncoder.hpp usr/include/libmaus2/huffman/SymBitRun.hpp usr/include/libmaus2/huffman/SymCount.hpp usr/include/libmaus2/huffman/SymCountDecoder.hpp usr/include/libmaus2/huffman/SymCountEncoder.hpp usr/include/libmaus2/huffman/SymCountRun.hpp usr/include/libmaus2/huffman/hufEncodeString.hpp usr/include/libmaus2/huffman/huffman.hpp usr/include/libmaus2/index usr/include/libmaus2/index/ExternalMemoryIndexDecoder.hpp usr/include/libmaus2/index/ExternalMemoryIndexDecoderFindLargestSmallerResult.hpp usr/include/libmaus2/index/ExternalMemoryIndexGenerator.hpp usr/include/libmaus2/index/ExternalMemoryIndexRecord.hpp usr/include/libmaus2/lcp usr/include/libmaus2/lcp/ComputeSuccinctLCPResult.hpp usr/include/libmaus2/lcp/LCP.hpp usr/include/libmaus2/lcp/PLCPBitDecoder.hpp usr/include/libmaus2/lcp/SuccinctLCP.hpp usr/include/libmaus2/lcp/WaveletLCP.hpp usr/include/libmaus2/lcp/WaveletLCPResult.hpp usr/include/libmaus2/lcs usr/include/libmaus2/lcs/Aligner.hpp usr/include/libmaus2/lcs/AlignerFactory.hpp usr/include/libmaus2/lcs/AlignmentOneAgainstManyAVX2.hpp usr/include/libmaus2/lcs/AlignmentOneAgainstManyFactory.hpp usr/include/libmaus2/lcs/AlignmentOneAgainstManyGeneric.hpp usr/include/libmaus2/lcs/AlignmentOneAgainstManyInterface.hpp usr/include/libmaus2/lcs/AlignmentPrint.hpp usr/include/libmaus2/lcs/AlignmentStatistics.hpp usr/include/libmaus2/lcs/AlignmentTraceContainer.hpp usr/include/libmaus2/lcs/BandedAligner.hpp usr/include/libmaus2/lcs/BandedAlignerFactory.hpp usr/include/libmaus2/lcs/BandedEditDistance.hpp usr/include/libmaus2/lcs/BandedLocalEditDistance.hpp usr/include/libmaus2/lcs/BaseConstants.hpp usr/include/libmaus2/lcs/BitVector.hpp usr/include/libmaus2/lcs/BitVectorResultCallbackInterface.hpp usr/include/libmaus2/lcs/Chain.hpp usr/include/libmaus2/lcs/ChainAddQueueElement.hpp usr/include/libmaus2/lcs/ChainAddQueueElementHeapComparator.hpp usr/include/libmaus2/lcs/ChainAlignment.hpp usr/include/libmaus2/lcs/ChainLeftMostComparator.hpp usr/include/libmaus2/lcs/ChainNode.hpp usr/include/libmaus2/lcs/ChainNodeInfo.hpp usr/include/libmaus2/lcs/ChainNodeInfoSet.hpp usr/include/libmaus2/lcs/ChainRemoveQueueElement.hpp usr/include/libmaus2/lcs/ChainRemoveQueueElementComparator.hpp usr/include/libmaus2/lcs/ChainSplayTreeNode.hpp usr/include/libmaus2/lcs/ChainSplayTreeNodeComparator.hpp usr/include/libmaus2/lcs/CheckSelf.hpp usr/include/libmaus2/lcs/DistNodeType.hpp usr/include/libmaus2/lcs/EditDistance.hpp usr/include/libmaus2/lcs/EditDistancePriorityType.hpp usr/include/libmaus2/lcs/EditDistanceResult.hpp usr/include/libmaus2/lcs/EditDistanceTraceContainer.hpp usr/include/libmaus2/lcs/GenericAlignmentPrint.hpp usr/include/libmaus2/lcs/GenericEditDistance.hpp usr/include/libmaus2/lcs/LCS.hpp usr/include/libmaus2/lcs/LCSDynamic.hpp usr/include/libmaus2/lcs/LCSRef.hpp usr/include/libmaus2/lcs/LocalAlignmentPrint.hpp usr/include/libmaus2/lcs/LocalAlignmentTraceContainer.hpp usr/include/libmaus2/lcs/LocalBaseConstants.hpp usr/include/libmaus2/lcs/LocalEditDistance.hpp usr/include/libmaus2/lcs/LocalEditDistanceResult.hpp usr/include/libmaus2/lcs/LocalEditDistanceTraceContainer.hpp usr/include/libmaus2/lcs/LocalPenaltyConstants.hpp usr/include/libmaus2/lcs/MetaEditDistance.hpp usr/include/libmaus2/lcs/MetaLocalEditDistance.hpp usr/include/libmaus2/lcs/NNP.hpp usr/include/libmaus2/lcs/NNPAlignResult.hpp usr/include/libmaus2/lcs/NNPCor.hpp usr/include/libmaus2/lcs/NNPCorL.hpp usr/include/libmaus2/lcs/NNPCorLocalAligner.hpp usr/include/libmaus2/lcs/NNPLocalAligner.hpp usr/include/libmaus2/lcs/NNPTraceContainer.hpp usr/include/libmaus2/lcs/NNPTraceElement.hpp usr/include/libmaus2/lcs/NP.hpp usr/include/libmaus2/lcs/NPL.hpp usr/include/libmaus2/lcs/NPLLinMem.hpp usr/include/libmaus2/lcs/NPLNoTrace.hpp usr/include/libmaus2/lcs/NPLSelf.hpp usr/include/libmaus2/lcs/NPLinMem.hpp usr/include/libmaus2/lcs/NPNoTrace.hpp usr/include/libmaus2/lcs/OverlapOrientation.hpp usr/include/libmaus2/lcs/PenaltyConstants.hpp usr/include/libmaus2/lcs/PosMapping.hpp usr/include/libmaus2/lcs/SMEMProcessor.hpp usr/include/libmaus2/lcs/ScoreBandedAligner.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreTemplate.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_def.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentScoreY256_16_undef.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentTemplate.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_def.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_16_undef.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_def.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentX128_8_undef.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_def.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_16_undef.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_def.hpp usr/include/libmaus2/lcs/SimdX86BandedGlobalAlignmentY256_8_undef.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentConstants128.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentConstants256.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentScoreConstants256.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentTemplate.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_16.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_16_def.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_16_undef.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_8.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_8_def.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentX128_8_undef.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_16.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_16_def.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_16_undef.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_8.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_8_def.hpp usr/include/libmaus2/lcs/SimdX86GlobalAlignmentY256_8_undef.hpp usr/include/libmaus2/lcs/SuffixArrayLCS.hpp usr/include/libmaus2/lcs/SuffixPrefix.hpp usr/include/libmaus2/lcs/SuffixPrefixAlignmentPrint.hpp usr/include/libmaus2/lcs/SuffixPrefixResult.hpp usr/include/libmaus2/lcs/TraceContainer.hpp usr/include/libmaus2/lcs/TwoSidedNPL.hpp usr/include/libmaus2/lf usr/include/libmaus2/lf/DArray.hpp usr/include/libmaus2/lf/HuffmanLF.hpp usr/include/libmaus2/lf/ImpCacheLineRankLF.hpp usr/include/libmaus2/lf/ImpCacheLineRankLFNonZero.hpp usr/include/libmaus2/lf/ImpCompactHuffmanWaveletLF.hpp usr/include/libmaus2/lf/ImpHuffmanWaveletLF.hpp usr/include/libmaus2/lf/ImpWTLF.hpp usr/include/libmaus2/lf/LF.hpp usr/include/libmaus2/lf/LFBase.hpp usr/include/libmaus2/lf/LFZero.hpp usr/include/libmaus2/lf/MultiRankCacheLF.hpp usr/include/libmaus2/lf/MultiRankLF.hpp usr/include/libmaus2/lf/QuickLF.hpp usr/include/libmaus2/lf/RLIndexLF.hpp usr/include/libmaus2/lru usr/include/libmaus2/lru/FileBunchLRU.hpp usr/include/libmaus2/lru/LRU.hpp usr/include/libmaus2/lru/SparseLRU.hpp usr/include/libmaus2/lru/SparseLRUFileBunch.hpp usr/include/libmaus2/lz usr/include/libmaus2/lz/BgzfChunkInputStream.hpp usr/include/libmaus2/lz/BgzfChunkInputStreamBuffer.hpp usr/include/libmaus2/lz/BgzfConstants.hpp usr/include/libmaus2/lz/BgzfDeflate.hpp usr/include/libmaus2/lz/BgzfDeflateBase.hpp usr/include/libmaus2/lz/BgzfDeflateBlockIdComparator.hpp usr/include/libmaus2/lz/BgzfDeflateBlockIdInfo.hpp usr/include/libmaus2/lz/BgzfDeflateHeaderFunctions.hpp usr/include/libmaus2/lz/BgzfDeflateInputBufferBase.hpp usr/include/libmaus2/lz/BgzfDeflateOutputBufferBase.hpp usr/include/libmaus2/lz/BgzfDeflateOutputBufferBaseAllocator.hpp usr/include/libmaus2/lz/BgzfDeflateOutputBufferBaseTypeInfo.hpp usr/include/libmaus2/lz/BgzfDeflateOutputCallback.hpp usr/include/libmaus2/lz/BgzfDeflateOutputCallbackMD5.hpp usr/include/libmaus2/lz/BgzfDeflateParallel.hpp usr/include/libmaus2/lz/BgzfDeflateParallelContext.hpp usr/include/libmaus2/lz/BgzfDeflateParallelThread.hpp usr/include/libmaus2/lz/BgzfDeflateZStreamBase.hpp usr/include/libmaus2/lz/BgzfDeflateZStreamBaseAllocator.hpp usr/include/libmaus2/lz/BgzfDeflateZStreamBaseFlushInfo.hpp usr/include/libmaus2/lz/BgzfDeflateZStreamBaseTypeInfo.hpp usr/include/libmaus2/lz/BgzfInflate.hpp usr/include/libmaus2/lz/BgzfInflateBase.hpp usr/include/libmaus2/lz/BgzfInflateBaseAllocator.hpp usr/include/libmaus2/lz/BgzfInflateBaseTypeInfo.hpp usr/include/libmaus2/lz/BgzfInflateBlock.hpp usr/include/libmaus2/lz/BgzfInflateBlockIdComparator.hpp usr/include/libmaus2/lz/BgzfInflateBlockIdInfo.hpp usr/include/libmaus2/lz/BgzfInflateDecompressPackageDispatcher.hpp usr/include/libmaus2/lz/BgzfInflateDeflateParallel.hpp usr/include/libmaus2/lz/BgzfInflateDeflateParallelInputStream.hpp usr/include/libmaus2/lz/BgzfInflateDeflateParallelThread.hpp usr/include/libmaus2/lz/BgzfInflateDeflateParallelWrapper.hpp usr/include/libmaus2/lz/BgzfInflateFile.hpp usr/include/libmaus2/lz/BgzfInflateHeaderBase.hpp usr/include/libmaus2/lz/BgzfInflateInfo.hpp usr/include/libmaus2/lz/BgzfInflateParallel.hpp usr/include/libmaus2/lz/BgzfInflateParallelContext.hpp usr/include/libmaus2/lz/BgzfInflateParallelStream.hpp usr/include/libmaus2/lz/BgzfInflateParallelThread.hpp usr/include/libmaus2/lz/BgzfInflateParallelWrapper.hpp usr/include/libmaus2/lz/BgzfInflateReadPackageDispatcher.hpp usr/include/libmaus2/lz/BgzfInflateStream.hpp usr/include/libmaus2/lz/BgzfInflateThreadPoolReader.hpp usr/include/libmaus2/lz/BgzfInflateWrapper.hpp usr/include/libmaus2/lz/BgzfInflateZStreamBase.hpp usr/include/libmaus2/lz/BgzfInflateZStreamBaseAllocator.hpp usr/include/libmaus2/lz/BgzfInflateZStreamBaseTypeInfo.hpp usr/include/libmaus2/lz/BgzfInputContext.hpp usr/include/libmaus2/lz/BgzfParallelRecodeDeflateBase.hpp usr/include/libmaus2/lz/BgzfRecode.hpp usr/include/libmaus2/lz/BgzfRecodeParallel.hpp usr/include/libmaus2/lz/BgzfStreamWrapper.hpp usr/include/libmaus2/lz/BgzfThreadOpBase.hpp usr/include/libmaus2/lz/BgzfVirtualOffset.hpp usr/include/libmaus2/lz/BufferedGzipStream.hpp usr/include/libmaus2/lz/BufferedGzipStreamBuffer.hpp usr/include/libmaus2/lz/BufferedGzipStreamWrapper.hpp usr/include/libmaus2/lz/CompressorObject.hpp usr/include/libmaus2/lz/CompressorObjectFactory.hpp usr/include/libmaus2/lz/CompressorObjectFreeListAllocator.hpp usr/include/libmaus2/lz/CompressorObjectFreeListAllocatorFactory.hpp usr/include/libmaus2/lz/DecompressorObject.hpp usr/include/libmaus2/lz/DecompressorObjectFactory.hpp usr/include/libmaus2/lz/DeflateDefaults.hpp usr/include/libmaus2/lz/GzipHeader.hpp usr/include/libmaus2/lz/GzipOutputStream.hpp usr/include/libmaus2/lz/GzipOutputStreamBuffer.hpp usr/include/libmaus2/lz/GzipSingleStream.hpp usr/include/libmaus2/lz/GzipStream.hpp usr/include/libmaus2/lz/GzipStreamWrapper.hpp usr/include/libmaus2/lz/Inflate.hpp usr/include/libmaus2/lz/IsGzip.hpp usr/include/libmaus2/lz/IstreamSource.hpp usr/include/libmaus2/lz/LineSplittingGzipOutputStream.hpp usr/include/libmaus2/lz/LineSplittingGzipOutputStreamBuffer.hpp usr/include/libmaus2/lz/Lz4Base.hpp usr/include/libmaus2/lz/Lz4Compress.hpp usr/include/libmaus2/lz/Lz4CompressStream.hpp usr/include/libmaus2/lz/Lz4CompressStreamBuffer.hpp usr/include/libmaus2/lz/Lz4CompressWrapper.hpp usr/include/libmaus2/lz/Lz4Decoder.hpp usr/include/libmaus2/lz/Lz4DecoderBuffer.hpp usr/include/libmaus2/lz/Lz4Index.hpp usr/include/libmaus2/lz/PlainOrGzipStream.hpp usr/include/libmaus2/lz/PlainOrGzipStreamBufferWrapper.hpp usr/include/libmaus2/lz/SimpleCompressedConcatInputStream.hpp usr/include/libmaus2/lz/SimpleCompressedConcatInputStreamFragment.hpp usr/include/libmaus2/lz/SimpleCompressedInputBlock.hpp usr/include/libmaus2/lz/SimpleCompressedInputBlockConcat.hpp usr/include/libmaus2/lz/SimpleCompressedInputBlockConcatBlock.hpp usr/include/libmaus2/lz/SimpleCompressedInputStream.hpp usr/include/libmaus2/lz/SimpleCompressedOutputStream.hpp usr/include/libmaus2/lz/SimpleCompressedStreamInterval.hpp usr/include/libmaus2/lz/SimpleCompressedStreamNamedInterval.hpp usr/include/libmaus2/lz/SnappyCompress.hpp usr/include/libmaus2/lz/SnappyCompressorObject.hpp usr/include/libmaus2/lz/SnappyCompressorObjectFactory.hpp usr/include/libmaus2/lz/SnappyCompressorObjectFactoryWrapper.hpp usr/include/libmaus2/lz/SnappyCompressorObjectFreeListAllocator.hpp usr/include/libmaus2/lz/SnappyDecompressorObject.hpp usr/include/libmaus2/lz/SnappyDecompressorObjectFactory.hpp usr/include/libmaus2/lz/SnappyFileInputStream.hpp usr/include/libmaus2/lz/SnappyFileOutputStream.hpp usr/include/libmaus2/lz/SnappyInputStream.hpp usr/include/libmaus2/lz/SnappyInputStreamArray.hpp usr/include/libmaus2/lz/SnappyInputStreamArrayFile.hpp usr/include/libmaus2/lz/SnappyOffsetFileInputStream.hpp usr/include/libmaus2/lz/SnappyOutputStream.hpp usr/include/libmaus2/lz/SnappyStringInputStream.hpp usr/include/libmaus2/lz/StdOstreamSink.hpp usr/include/libmaus2/lz/StreamWrapper.hpp usr/include/libmaus2/lz/StreamWrapperBuffer.hpp usr/include/libmaus2/lz/XzDecoder.hpp usr/include/libmaus2/lz/XzInputStream.hpp usr/include/libmaus2/lz/XzInputStreamBuffer.hpp usr/include/libmaus2/lz/ZlibCompressorObject.hpp usr/include/libmaus2/lz/ZlibCompressorObjectFactory.hpp usr/include/libmaus2/lz/ZlibCompressorObjectFactoryWrapper.hpp usr/include/libmaus2/lz/ZlibCompressorObjectFreeListAllocator.hpp usr/include/libmaus2/lz/ZlibDecompressorObject.hpp usr/include/libmaus2/lz/ZlibDecompressorObjectFactory.hpp usr/include/libmaus2/lz/ZlibInterface.hpp usr/include/libmaus2/math usr/include/libmaus2/math/Bernoulli.hpp usr/include/libmaus2/math/BernoulliNumber.hpp usr/include/libmaus2/math/ClusteredBernoulli.hpp usr/include/libmaus2/math/ConstantSumCombinatorics.hpp usr/include/libmaus2/math/Convolution.hpp usr/include/libmaus2/math/DecimalNumberParser.hpp usr/include/libmaus2/math/Distribution.hpp usr/include/libmaus2/math/DoubleCode.hpp usr/include/libmaus2/math/Faulhaber.hpp usr/include/libmaus2/math/GeneralisedBernoulli.hpp usr/include/libmaus2/math/GeneralisedClusterBernoulli.hpp usr/include/libmaus2/math/GmpFloat.hpp usr/include/libmaus2/math/GmpInteger.hpp usr/include/libmaus2/math/HistogramBuckets.hpp usr/include/libmaus2/math/IPower.hpp usr/include/libmaus2/math/IntegerInterval.hpp usr/include/libmaus2/math/LGammaCache.hpp usr/include/libmaus2/math/Log.hpp usr/include/libmaus2/math/LogNormalDistribution.hpp usr/include/libmaus2/math/Matrix.hpp usr/include/libmaus2/math/MetaLog.hpp usr/include/libmaus2/math/NormalDistribution.hpp usr/include/libmaus2/math/Rational.hpp usr/include/libmaus2/math/RationalPolynomialSupport.hpp usr/include/libmaus2/math/RepetetiveKmerFreqEstimate.hpp usr/include/libmaus2/math/UnsignedInteger.hpp usr/include/libmaus2/math/binom.hpp usr/include/libmaus2/math/bitsPerNum.hpp usr/include/libmaus2/math/gcd.hpp usr/include/libmaus2/math/iabs.hpp usr/include/libmaus2/math/ilog.hpp usr/include/libmaus2/math/ipow.hpp usr/include/libmaus2/math/isqrt.hpp usr/include/libmaus2/math/lowbits.hpp usr/include/libmaus2/math/numbits.hpp usr/include/libmaus2/math/primes16.hpp usr/include/libmaus2/network usr/include/libmaus2/network/CurlInitObject.hpp usr/include/libmaus2/network/CurlInputStream.hpp usr/include/libmaus2/network/CurlInputStreamBuffer.hpp usr/include/libmaus2/network/CurlObject.hpp usr/include/libmaus2/network/CurlObjectReader.hpp usr/include/libmaus2/network/CurlObjectThreadCallable.hpp usr/include/libmaus2/network/CurlOutputBlock.hpp usr/include/libmaus2/network/CurlResponseAcceptor.hpp usr/include/libmaus2/network/FileUrl.hpp usr/include/libmaus2/network/FtpCurlResponseAcceptor.hpp usr/include/libmaus2/network/GetHostName.hpp usr/include/libmaus2/network/HttpCurlResponseAcceptor.hpp usr/include/libmaus2/network/UrlBase.hpp usr/include/libmaus2/network/UrlInputStream.hpp usr/include/libmaus2/network/UrlInputStreamBufferWrapper.hpp usr/include/libmaus2/network/UrlInputStreamFactory.hpp usr/include/libmaus2/parallel usr/include/libmaus2/parallel/AtomicPtrHeap.hpp usr/include/libmaus2/parallel/AtomicPtrQueue.hpp usr/include/libmaus2/parallel/AtomicPtrStack.hpp usr/include/libmaus2/parallel/AtomicQueue.hpp usr/include/libmaus2/parallel/AtomicStack.hpp usr/include/libmaus2/parallel/LockedBool.hpp usr/include/libmaus2/parallel/LockedCounter.hpp usr/include/libmaus2/parallel/LockedFreeList.hpp usr/include/libmaus2/parallel/LockedGrowingFreeList.hpp usr/include/libmaus2/parallel/LockedHeap.hpp usr/include/libmaus2/parallel/LockedQueue.hpp usr/include/libmaus2/parallel/NumCpus.hpp usr/include/libmaus2/parallel/OMPNumThreadsScope.hpp usr/include/libmaus2/parallel/SimpleThreadPool.hpp usr/include/libmaus2/parallel/SimpleThreadPoolBase.hpp usr/include/libmaus2/parallel/SimpleThreadPoolInterface.hpp usr/include/libmaus2/parallel/SimpleThreadPoolInterfaceEnqueTermInterface.hpp usr/include/libmaus2/parallel/SimpleThreadPoolThread.hpp usr/include/libmaus2/parallel/SimpleThreadPoolThreadId.hpp usr/include/libmaus2/parallel/SimpleThreadPoolThreadIdNode.hpp usr/include/libmaus2/parallel/SimpleThreadPoolThreadIdTree.hpp usr/include/libmaus2/parallel/SimpleThreadPoolWorkPackageFreeList.hpp usr/include/libmaus2/parallel/SimpleThreadWorkPackage.hpp usr/include/libmaus2/parallel/SimpleThreadWorkPackageComparator.hpp usr/include/libmaus2/parallel/SimpleThreadWorkPackageDispatcher.hpp usr/include/libmaus2/parallel/StdBasicSpinLock.hpp usr/include/libmaus2/parallel/StdMutex.hpp usr/include/libmaus2/parallel/StdSemaphore.hpp usr/include/libmaus2/parallel/StdSpinLock.hpp usr/include/libmaus2/parallel/StdSynchronousConditionQueue.hpp usr/include/libmaus2/parallel/StdSynchronousHeap.hpp usr/include/libmaus2/parallel/StdSynchronousQueue.hpp usr/include/libmaus2/parallel/StdTerminatableSynchronousHeap.hpp usr/include/libmaus2/parallel/StdTerminatableSynchronousQueue.hpp usr/include/libmaus2/parallel/StdThread.hpp usr/include/libmaus2/parallel/SynchronousCounter.hpp usr/include/libmaus2/parallel/threadpool usr/include/libmaus2/parallel/threadpool/LockedMap.hpp usr/include/libmaus2/parallel/threadpool/ThreadPool.hpp usr/include/libmaus2/parallel/threadpool/ThreadPoolDispatcher.hpp usr/include/libmaus2/parallel/threadpool/ThreadWorkPackage.hpp usr/include/libmaus2/parallel/threadpool/ThreadWorkPackageData.hpp usr/include/libmaus2/parallel/threadpool/bam usr/include/libmaus2/parallel/threadpool/bam/BamHeaderSeqData.hpp usr/include/libmaus2/parallel/threadpool/bam/BamParseContext.hpp usr/include/libmaus2/parallel/threadpool/bam/BamParseHeaderData.hpp usr/include/libmaus2/parallel/threadpool/bam/BamParseOutputQueue.hpp usr/include/libmaus2/parallel/threadpool/bam/BamParsePackageData.hpp usr/include/libmaus2/parallel/threadpool/bam/BamParsePackageDataDispatcher.hpp usr/include/libmaus2/parallel/threadpool/bam/BamParsePackageDataHandler.hpp usr/include/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseControl.hpp usr/include/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseHandler.hpp usr/include/libmaus2/parallel/threadpool/bam/ThreadPoolBamParseTrivialReturnHandler.hpp usr/include/libmaus2/parallel/threadpool/bgzf usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfo.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoEnqueDecompressHandler.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoHandlerInterface.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockInfoTrivialReturnHandler.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfBlockSummary.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedInterface.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDataDecompressedTrivialReturnInterface.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressContext.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageData.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressPackageDataDispatcher.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfDecompressedBlock.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoder.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfHeaderDecoderBase.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfInputReadInterface.hpp usr/include/libmaus2/parallel/threadpool/bgzf/BgzfInputThreadControl.hpp usr/include/libmaus2/parallel/threadpool/bgzf/GenericBlock.hpp usr/include/libmaus2/parallel/threadpool/bgzf/ReadInfo.hpp usr/include/libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFDecompressControl.hpp usr/include/libmaus2/parallel/threadpool/bgzf/ThreadPoolBGZFReadControl.hpp usr/include/libmaus2/parallel/threadpool/cram usr/include/libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageData.hpp usr/include/libmaus2/parallel/threadpool/cram/CramEncodingWorkPackageDispatcher.hpp usr/include/libmaus2/parallel/threadpool/cram/CramEnqueuePackageData.hpp usr/include/libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataDispatcher.hpp usr/include/libmaus2/parallel/threadpool/cram/CramEnqueuePackageDataHandler.hpp usr/include/libmaus2/parallel/threadpool/cram/ThreadPoolCramEnqueueControl.hpp usr/include/libmaus2/parallel/threadpool/input usr/include/libmaus2/parallel/threadpool/input/InputThreadCallbackInterface.hpp usr/include/libmaus2/parallel/threadpool/input/InputThreadControl.hpp usr/include/libmaus2/parallel/threadpool/input/InputThreadPackageData.hpp usr/include/libmaus2/parallel/threadpool/input/InputThreadPackageDispatcher.hpp usr/include/libmaus2/parallel/threadpool/input/InputThreadTrivialReturnInterface.hpp usr/include/libmaus2/parallel/threadpool/input/ThreadPoolInputBlock.hpp usr/include/libmaus2/parallel/threadpool/input/ThreadPoolInputInfo.hpp usr/include/libmaus2/posix usr/include/libmaus2/posix/PosixExecute.hpp usr/include/libmaus2/posix/PosixFunctions.hpp usr/include/libmaus2/protein usr/include/libmaus2/protein/Align.hpp usr/include/libmaus2/protein/AlignGlobal.hpp usr/include/libmaus2/protein/Blosum62.hpp usr/include/libmaus2/protein/CodonMapper.hpp usr/include/libmaus2/protein/ProteinAlignment.hpp usr/include/libmaus2/quantisation usr/include/libmaus2/quantisation/ClusterComputation.hpp usr/include/libmaus2/quantisation/KmeansDataType.hpp usr/include/libmaus2/quantisation/Quantiser.hpp usr/include/libmaus2/random usr/include/libmaus2/random/DNABaseNoiseSpiker.hpp usr/include/libmaus2/random/GaussianRandom.hpp usr/include/libmaus2/random/LogNormalRandom.hpp usr/include/libmaus2/random/Poisson.hpp usr/include/libmaus2/random/Random.hpp usr/include/libmaus2/random/UniformUnitRandom.hpp usr/include/libmaus2/rank usr/include/libmaus2/rank/BSwapBase.hpp usr/include/libmaus2/rank/CacheLineRank.hpp usr/include/libmaus2/rank/ChooseCache.hpp usr/include/libmaus2/rank/CodeBase.hpp usr/include/libmaus2/rank/DNARank.hpp usr/include/libmaus2/rank/DNARankBiDir.hpp usr/include/libmaus2/rank/DNARankBiDirRange.hpp usr/include/libmaus2/rank/DNARankBiDirRangeSizeComparator.hpp usr/include/libmaus2/rank/DNARankGetPosition.hpp usr/include/libmaus2/rank/DNARankKmerCache.hpp usr/include/libmaus2/rank/DNARankMEM.hpp usr/include/libmaus2/rank/DNARankMEMPosComparator.hpp usr/include/libmaus2/rank/DNARankSMEMComputation.hpp usr/include/libmaus2/rank/DNARankSMEMContext.hpp usr/include/libmaus2/rank/DNARankSuffixTreeNodeEnumerator.hpp usr/include/libmaus2/rank/DNARankSuffixTreeNodeEnumeratorQueueElement.hpp usr/include/libmaus2/rank/DecodeCache.hpp usr/include/libmaus2/rank/ERank.hpp usr/include/libmaus2/rank/ERank2.hpp usr/include/libmaus2/rank/ERank22.hpp usr/include/libmaus2/rank/ERank222.hpp usr/include/libmaus2/rank/ERank222B.hpp usr/include/libmaus2/rank/ERank222BAppend.hpp usr/include/libmaus2/rank/ERank222BAppendDynamic.hpp usr/include/libmaus2/rank/ERank222BBase.hpp usr/include/libmaus2/rank/ERank222BP.hpp usr/include/libmaus2/rank/ERank22B.hpp usr/include/libmaus2/rank/ERank3.hpp usr/include/libmaus2/rank/ERank3C.hpp usr/include/libmaus2/rank/ERankBase.hpp usr/include/libmaus2/rank/EncodeCache.hpp usr/include/libmaus2/rank/FastRank.hpp usr/include/libmaus2/rank/ImpCacheLineRank.hpp usr/include/libmaus2/rank/Proc01.hpp usr/include/libmaus2/rank/RankTable.hpp usr/include/libmaus2/rank/RunLengthBitVector.hpp usr/include/libmaus2/rank/RunLengthBitVectorBase.hpp usr/include/libmaus2/rank/RunLengthBitVectorGenerator.hpp usr/include/libmaus2/rank/RunLengthBitVectorGeneratorBase.hpp usr/include/libmaus2/rank/RunLengthBitVectorGeneratorGammaBase.hpp usr/include/libmaus2/rank/RunLengthBitVectorStream.hpp usr/include/libmaus2/rank/log2table.hpp usr/include/libmaus2/rank/popcnt.hpp usr/include/libmaus2/rl usr/include/libmaus2/rl/RLIndex.hpp usr/include/libmaus2/rmq usr/include/libmaus2/rmq/CartesianTree.hpp usr/include/libmaus2/rmq/QuickDynamicRMQ.hpp usr/include/libmaus2/rmq/RMMTree.hpp usr/include/libmaus2/select usr/include/libmaus2/select/ESelect222B.hpp usr/include/libmaus2/select/ESelectBase.hpp usr/include/libmaus2/select/ESelectSimple.hpp usr/include/libmaus2/select/ImpCacheLineSelectSupport.hpp usr/include/libmaus2/serialize usr/include/libmaus2/serialize/Serialize.hpp usr/include/libmaus2/sorting usr/include/libmaus2/sorting/InPlaceParallelSort.hpp usr/include/libmaus2/sorting/InterleavedRadixSort.hpp usr/include/libmaus2/sorting/MergeStepBinSearchResult.hpp usr/include/libmaus2/sorting/MergingReadBack.hpp usr/include/libmaus2/sorting/PairFileSorting.hpp usr/include/libmaus2/sorting/ParallelExternalRadixSort.hpp usr/include/libmaus2/sorting/ParallelRadixSort.hpp usr/include/libmaus2/sorting/ParallelRunLengthRadixSort.hpp usr/include/libmaus2/sorting/ParallelRunLengthRadixUnsort.hpp usr/include/libmaus2/sorting/ParallelStableSort.hpp usr/include/libmaus2/sorting/RankSearch.hpp usr/include/libmaus2/sorting/SemiExternalKeyTupleSort.hpp usr/include/libmaus2/sorting/SerialRadixSort64.hpp usr/include/libmaus2/sorting/SortingBufferedOutputFile.hpp usr/include/libmaus2/sorting/sorting.hpp usr/include/libmaus2/stacktrace usr/include/libmaus2/stacktrace/StackLineTranslator.hpp usr/include/libmaus2/stacktrace/StackTrace.hpp usr/include/libmaus2/stacktrace/StackTraceBufferContainer.hpp usr/include/libmaus2/suffixsort usr/include/libmaus2/suffixsort/BwtMergeBlockSortRequest.hpp usr/include/libmaus2/suffixsort/BwtMergeBlockSortRequestBase.hpp usr/include/libmaus2/suffixsort/BwtMergeBlockSortResult.hpp usr/include/libmaus2/suffixsort/BwtMergeEnumBase.hpp usr/include/libmaus2/suffixsort/BwtMergeTempFileNameSet.hpp usr/include/libmaus2/suffixsort/BwtMergeTempFileNameSetVector.hpp usr/include/libmaus2/suffixsort/BwtMergeZBlock.hpp usr/include/libmaus2/suffixsort/BwtMergeZBlockRequest.hpp usr/include/libmaus2/suffixsort/BwtMergeZBlockRequestVector.hpp usr/include/libmaus2/suffixsort/ByteInputTypes.hpp usr/include/libmaus2/suffixsort/CircularBwt.hpp usr/include/libmaus2/suffixsort/CircularSuffixComparator.hpp usr/include/libmaus2/suffixsort/CompactInputTypes.hpp usr/include/libmaus2/suffixsort/GapArrayByte.hpp usr/include/libmaus2/suffixsort/GapArrayByteDecoder.hpp usr/include/libmaus2/suffixsort/GapArrayByteDecoderBuffer.hpp usr/include/libmaus2/suffixsort/GapArrayByteOverflowKeyAccessor.hpp usr/include/libmaus2/suffixsort/GapMergePacket.hpp usr/include/libmaus2/suffixsort/Lz4InputTypes.hpp usr/include/libmaus2/suffixsort/PacInputTypes.hpp usr/include/libmaus2/suffixsort/PacTermInputTypes.hpp usr/include/libmaus2/suffixsort/SkewSuffixSort.hpp usr/include/libmaus2/suffixsort/SmallestRotation.hpp usr/include/libmaus2/suffixsort/Utf8InputTypes.hpp usr/include/libmaus2/suffixsort/bwtb3m usr/include/libmaus2/suffixsort/bwtb3m/BWTB3MBase.hpp usr/include/libmaus2/suffixsort/bwtb3m/BaseBlockSortThread.hpp usr/include/libmaus2/suffixsort/bwtb3m/BaseBlockSorting.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtComputeSSA.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeComputeSampledSA.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeIsaBase.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeIsaParallelBase.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeParallelGapFragMerge.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSort.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSortOptions.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSortResult.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtMergeSortTemplate.hpp usr/include/libmaus2/suffixsort/bwtb3m/BwtSelectSSA.hpp usr/include/libmaus2/suffixsort/bwtb3m/GapArrayWrapper.hpp usr/include/libmaus2/suffixsort/bwtb3m/InputTypesForward.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyBaseBlock.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyBlock.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyConstruction.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeBlock.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeExternalBlock.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequest.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeGapRequestQueryObject.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInput.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalBlock.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeStrategyMergeInternalSmallBlock.hpp usr/include/libmaus2/suffixsort/bwtb3m/MergeTree.hpp usr/include/libmaus2/suffixsort/bwtb3m/PreIsaAdapter.hpp usr/include/libmaus2/suffixsort/divsufsort.hpp usr/include/libmaus2/suffixtree usr/include/libmaus2/suffixtree/CompressedSuffixTree.hpp usr/include/libmaus2/sv usr/include/libmaus2/sv/sv.hpp usr/include/libmaus2/timing usr/include/libmaus2/timing/RealTimeClock.hpp usr/include/libmaus2/trie usr/include/libmaus2/trie/SimpleTrie.hpp usr/include/libmaus2/trie/TrieState.hpp usr/include/libmaus2/types usr/include/libmaus2/types/types.hpp usr/include/libmaus2/uint usr/include/libmaus2/uint/uint.hpp usr/include/libmaus2/util usr/include/libmaus2/util/AlphaDigitTable.hpp usr/include/libmaus2/util/AlphaTable.hpp usr/include/libmaus2/util/ArgInfo.hpp usr/include/libmaus2/util/ArgInfoParseBase.hpp usr/include/libmaus2/util/ArgParser.hpp usr/include/libmaus2/util/ArrayIterator.hpp usr/include/libmaus2/util/AtomicArray.hpp usr/include/libmaus2/util/AutoArrayCharBaseAllocator.hpp usr/include/libmaus2/util/AutoArrayCharBaseTypeInfo.hpp usr/include/libmaus2/util/AutoArrayUInt8TBaseAllocator.hpp usr/include/libmaus2/util/AutoArrayUInt8TBaseTypeInfo.hpp usr/include/libmaus2/util/Base64.hpp usr/include/libmaus2/util/BitList.hpp usr/include/libmaus2/util/BitsPerNum.hpp usr/include/libmaus2/util/BorderArray.hpp usr/include/libmaus2/util/CompactNumberArray.hpp usr/include/libmaus2/util/Concat.hpp usr/include/libmaus2/util/ConcatRequest.hpp usr/include/libmaus2/util/ConsoleColor.hpp usr/include/libmaus2/util/ContainerDescription.hpp usr/include/libmaus2/util/ContainerDescriptionList.hpp usr/include/libmaus2/util/ContainerElementFreeList.hpp usr/include/libmaus2/util/ContainerGetObject.hpp usr/include/libmaus2/util/CountGetObject.hpp usr/include/libmaus2/util/CountPutIterator.hpp usr/include/libmaus2/util/CountPutObject.hpp usr/include/libmaus2/util/DigitTable.hpp usr/include/libmaus2/util/DirectoryStructure.hpp usr/include/libmaus2/util/DynamicLoading.hpp usr/include/libmaus2/util/Enumerator.hpp usr/include/libmaus2/util/FileEnumerator.hpp usr/include/libmaus2/util/FileTempFileContainer.hpp usr/include/libmaus2/util/FiniteSizeHeap.hpp usr/include/libmaus2/util/FreeList.hpp usr/include/libmaus2/util/GenericIntervalTree.hpp usr/include/libmaus2/util/GenericSerialisation.hpp usr/include/libmaus2/util/GetCObject.hpp usr/include/libmaus2/util/GetFileSize.hpp usr/include/libmaus2/util/GrowingFreeList.hpp usr/include/libmaus2/util/Histogram.hpp usr/include/libmaus2/util/HistogramSet.hpp usr/include/libmaus2/util/ImpCompactNumberArray.hpp usr/include/libmaus2/util/IncreasingList.hpp usr/include/libmaus2/util/IntervalTree.hpp usr/include/libmaus2/util/KMP.hpp usr/include/libmaus2/util/LELoad.hpp usr/include/libmaus2/util/LineAccessor.hpp usr/include/libmaus2/util/LineBuffer.hpp usr/include/libmaus2/util/LocalTempContainer.hpp usr/include/libmaus2/util/LongestIncreasingSubsequence.hpp usr/include/libmaus2/util/LongestIncreasingSubsequenceExtendedResult.hpp usr/include/libmaus2/util/LookupIntervalTree.hpp usr/include/libmaus2/util/MemTempFileContainer.hpp usr/include/libmaus2/util/MemUsage.hpp usr/include/libmaus2/util/MemoryStatistics.hpp usr/include/libmaus2/util/MoveStack.hpp usr/include/libmaus2/util/NotDigitOrTermTable.hpp usr/include/libmaus2/util/NumberMapSerialisation.hpp usr/include/libmaus2/util/NumberSerialisation.hpp usr/include/libmaus2/util/NumberToString.hpp usr/include/libmaus2/util/Object.hpp usr/include/libmaus2/util/OctetString.hpp usr/include/libmaus2/util/OffsetArray.hpp usr/include/libmaus2/util/OutputFileNameTools.hpp usr/include/libmaus2/util/PathTools.hpp usr/include/libmaus2/util/PrefixSums.hpp usr/include/libmaus2/util/PushBuffer.hpp usr/include/libmaus2/util/PutObject.hpp usr/include/libmaus2/util/PutObjectReverse.hpp usr/include/libmaus2/util/Queue.hpp usr/include/libmaus2/util/ReverseAdapter.hpp usr/include/libmaus2/util/ReverseByteOrder.hpp usr/include/libmaus2/util/SaturatingCounter.hpp usr/include/libmaus2/util/SerialiseHelper.hpp usr/include/libmaus2/util/SimpleBloomFilter.hpp usr/include/libmaus2/util/SimpleCountingHash.hpp usr/include/libmaus2/util/SimpleHashMap.hpp usr/include/libmaus2/util/SimpleHashMapConstants.hpp usr/include/libmaus2/util/SimpleHashMapDisplaceMaskFunction.hpp usr/include/libmaus2/util/SimpleHashMapHashCompute.hpp usr/include/libmaus2/util/SimpleHashMapInsDel.hpp usr/include/libmaus2/util/SimpleHashMapKeyPrint.hpp usr/include/libmaus2/util/SimpleHashMapNumberCast.hpp usr/include/libmaus2/util/SimpleHashSet.hpp usr/include/libmaus2/util/SimpleHashSetInsDel.hpp usr/include/libmaus2/util/SimpleQueue.hpp usr/include/libmaus2/util/SplayTree.hpp usr/include/libmaus2/util/StreamGetObject.hpp usr/include/libmaus2/util/StringAllocTypes.hpp usr/include/libmaus2/util/StringMapCompare.hpp usr/include/libmaus2/util/StringSerialisation.hpp usr/include/libmaus2/util/SuccinctBorderArray.hpp usr/include/libmaus2/util/TabEntry.hpp usr/include/libmaus2/util/TempFileContainer.hpp usr/include/libmaus2/util/TempFileNameGenerator.hpp usr/include/libmaus2/util/TempFileNameGeneratorState.hpp usr/include/libmaus2/util/TempFileRemovalContainer.hpp usr/include/libmaus2/util/Terminal.hpp usr/include/libmaus2/util/ToUpperTable.hpp usr/include/libmaus2/util/U.hpp usr/include/libmaus2/util/UnitNum.hpp usr/include/libmaus2/util/UnsignedCharVariant.hpp usr/include/libmaus2/util/UnsignedIntegerIndexIterator.hpp usr/include/libmaus2/util/Utf8BlockIndex.hpp usr/include/libmaus2/util/Utf8BlockIndexDecoder.hpp usr/include/libmaus2/util/Utf8DecoderBuffer.hpp usr/include/libmaus2/util/Utf8DecoderWrapper.hpp usr/include/libmaus2/util/Utf8String.hpp usr/include/libmaus2/util/Utf8StringPairAdapter.hpp usr/include/libmaus2/util/VarBitList.hpp usr/include/libmaus2/util/VarList.hpp usr/include/libmaus2/util/WriteableString.hpp usr/include/libmaus2/util/atomic_shared_ptr.hpp usr/include/libmaus2/util/iterator.hpp 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