python3-cogent3 (2026.6.2a0+dfsg-1)
Details
Core information at a glance
- Distribution
- kali
- Origin
- kali-last-snapshot
- Repository
- https://http.kali.org/kali
- Codename
- kali-last-snapshot
- Component
- main
- Source
- python-cogent
- Architecture
- amd64
- Section
- python
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 2.8 kB
- Size expected
- 522.8 kB
- Size actual
- 522.8 kB
- Size match
Dependencies
Required package dependencies
- python3-charset-normalizer
- python3-citeable
- python3-numba | python3-supported-max (<< 3.11) | python3-supported-min (>= 3.12)
- python3-numba | python3-supported-max (<< 3.12) | python3-supported-min (>= 3.13)
- python3-numba | python3-supported-max (<< 3.13) | python3-supported-min (>= 3.14)
- python3-numba | python3-supported-max (<< 3.14) | python3-supported-min (>= 3.15)
- python3-numpy
- python3-scinexus
- python3-scipy
- python3-stevedore
- python3-tqdm
- python3-typeguard
- python3-typing-extensions
- python3:any
Description
framework for genomic biology
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 7ae0bbe4…3541442d | |
| SHA-1 | eca9ad41…8ae5e209 | |
| SHA-256 | b0261cb7…37677c72 | |
| SHA-512 | 32326b1c…cca56e7e |
Contents
Files and directories included
. usr usr/lib usr/lib/python3 usr/lib/python3/dist-packages usr/lib/python3/dist-packages/cogent3 usr/lib/python3/dist-packages/cogent3/__init__.py usr/lib/python3/dist-packages/cogent3/_dataset usr/lib/python3/dist-packages/cogent3/_dataset/__init__.py usr/lib/python3/dist-packages/cogent3/_dataset/brca1.fasta usr/lib/python3/dist-packages/cogent3/_dataset/murphy.tree usr/lib/python3/dist-packages/cogent3/_plugin.py usr/lib/python3/dist-packages/cogent3/_version.py usr/lib/python3/dist-packages/cogent3/align usr/lib/python3/dist-packages/cogent3/align/__init__.py usr/lib/python3/dist-packages/cogent3/align/align.py usr/lib/python3/dist-packages/cogent3/align/dp_calculation.py usr/lib/python3/dist-packages/cogent3/align/indel_model.py usr/lib/python3/dist-packages/cogent3/align/indel_positions.py usr/lib/python3/dist-packages/cogent3/align/pairwise.py usr/lib/python3/dist-packages/cogent3/align/pairwise_pogs_numba.py usr/lib/python3/dist-packages/cogent3/align/pairwise_seqs_numba.py usr/lib/python3/dist-packages/cogent3/align/progressive.py usr/lib/python3/dist-packages/cogent3/align/pycompare.py usr/lib/python3/dist-packages/cogent3/align/traceback.py usr/lib/python3/dist-packages/cogent3/app usr/lib/python3/dist-packages/cogent3/app/__init__.py usr/lib/python3/dist-packages/cogent3/app/_citations.py usr/lib/python3/dist-packages/cogent3/app/align.py usr/lib/python3/dist-packages/cogent3/app/composable.py usr/lib/python3/dist-packages/cogent3/app/data_store.py usr/lib/python3/dist-packages/cogent3/app/dist.py usr/lib/python3/dist-packages/cogent3/app/evo.py usr/lib/python3/dist-packages/cogent3/app/io.py usr/lib/python3/dist-packages/cogent3/app/result.py usr/lib/python3/dist-packages/cogent3/app/sample.py usr/lib/python3/dist-packages/cogent3/app/sqlite_data_store.py usr/lib/python3/dist-packages/cogent3/app/translate.py usr/lib/python3/dist-packages/cogent3/app/tree.py usr/lib/python3/dist-packages/cogent3/app/typing.py usr/lib/python3/dist-packages/cogent3/cluster usr/lib/python3/dist-packages/cogent3/cluster/UPGMA.py usr/lib/python3/dist-packages/cogent3/cluster/__init__.py usr/lib/python3/dist-packages/cogent3/core usr/lib/python3/dist-packages/cogent3/core/__init__.py usr/lib/python3/dist-packages/cogent3/core/alignment.py usr/lib/python3/dist-packages/cogent3/core/alphabet.py usr/lib/python3/dist-packages/cogent3/core/annotation.py usr/lib/python3/dist-packages/cogent3/core/annotation_db.py usr/lib/python3/dist-packages/cogent3/core/genetic_code.py usr/lib/python3/dist-packages/cogent3/core/info.py usr/lib/python3/dist-packages/cogent3/core/location.py usr/lib/python3/dist-packages/cogent3/core/moltype.py usr/lib/python3/dist-packages/cogent3/core/profile.py usr/lib/python3/dist-packages/cogent3/core/seq_storage.py usr/lib/python3/dist-packages/cogent3/core/sequence.py usr/lib/python3/dist-packages/cogent3/core/seqview.py usr/lib/python3/dist-packages/cogent3/core/slice_record.py usr/lib/python3/dist-packages/cogent3/core/table.py usr/lib/python3/dist-packages/cogent3/core/tree.py usr/lib/python3/dist-packages/cogent3/data usr/lib/python3/dist-packages/cogent3/data/__init__.py usr/lib/python3/dist-packages/cogent3/data/energy_params.py usr/lib/python3/dist-packages/cogent3/data/molecular_weight.py usr/lib/python3/dist-packages/cogent3/draw usr/lib/python3/dist-packages/cogent3/draw/__init__.py usr/lib/python3/dist-packages/cogent3/draw/annotation.py usr/lib/python3/dist-packages/cogent3/draw/dendrogram.py usr/lib/python3/dist-packages/cogent3/draw/dotplot.py usr/lib/python3/dist-packages/cogent3/draw/drawable.py usr/lib/python3/dist-packages/cogent3/draw/letter.py usr/lib/python3/dist-packages/cogent3/draw/logo.py usr/lib/python3/dist-packages/cogent3/evolve usr/lib/python3/dist-packages/cogent3/evolve/__init__.py usr/lib/python3/dist-packages/cogent3/evolve/best_likelihood.py usr/lib/python3/dist-packages/cogent3/evolve/bootstrap.py usr/lib/python3/dist-packages/cogent3/evolve/coevolution.py usr/lib/python3/dist-packages/cogent3/evolve/discrete_markov.py usr/lib/python3/dist-packages/cogent3/evolve/distance.py usr/lib/python3/dist-packages/cogent3/evolve/fast_distance.py usr/lib/python3/dist-packages/cogent3/evolve/likelihood_calculation.py usr/lib/python3/dist-packages/cogent3/evolve/likelihood_function.py usr/lib/python3/dist-packages/cogent3/evolve/likelihood_tree.py usr/lib/python3/dist-packages/cogent3/evolve/likelihood_tree_numba.py usr/lib/python3/dist-packages/cogent3/evolve/models.py usr/lib/python3/dist-packages/cogent3/evolve/motif_prob_model.py usr/lib/python3/dist-packages/cogent3/evolve/ns_substitution_model.py usr/lib/python3/dist-packages/cogent3/evolve/pairwise_distance_numba.py usr/lib/python3/dist-packages/cogent3/evolve/parameter_controller.py usr/lib/python3/dist-packages/cogent3/evolve/predicate.py usr/lib/python3/dist-packages/cogent3/evolve/simulate.py usr/lib/python3/dist-packages/cogent3/evolve/solved_models.py usr/lib/python3/dist-packages/cogent3/evolve/solved_models_numba.py usr/lib/python3/dist-packages/cogent3/evolve/substitution_calculation.py usr/lib/python3/dist-packages/cogent3/evolve/substitution_model.py usr/lib/python3/dist-packages/cogent3/format usr/lib/python3/dist-packages/cogent3/format/__init__.py usr/lib/python3/dist-packages/cogent3/format/bedgraph.py usr/lib/python3/dist-packages/cogent3/format/clustal.py usr/lib/python3/dist-packages/cogent3/format/fasta.py usr/lib/python3/dist-packages/cogent3/format/gde.py usr/lib/python3/dist-packages/cogent3/format/nexus.py usr/lib/python3/dist-packages/cogent3/format/paml.py usr/lib/python3/dist-packages/cogent3/format/phylip.py usr/lib/python3/dist-packages/cogent3/format/sequence.py usr/lib/python3/dist-packages/cogent3/format/table.py usr/lib/python3/dist-packages/cogent3/format/util.py usr/lib/python3/dist-packages/cogent3/maths usr/lib/python3/dist-packages/cogent3/maths/__init__.py usr/lib/python3/dist-packages/cogent3/maths/distance_transform.py usr/lib/python3/dist-packages/cogent3/maths/geometry.py usr/lib/python3/dist-packages/cogent3/maths/markov.py usr/lib/python3/dist-packages/cogent3/maths/matrix_exponential_integration.py usr/lib/python3/dist-packages/cogent3/maths/matrix_exponentiation.py usr/lib/python3/dist-packages/cogent3/maths/matrix_logarithm.py usr/lib/python3/dist-packages/cogent3/maths/measure.py usr/lib/python3/dist-packages/cogent3/maths/optimisers.py usr/lib/python3/dist-packages/cogent3/maths/period.py usr/lib/python3/dist-packages/cogent3/maths/period_numba.py usr/lib/python3/dist-packages/cogent3/maths/scipy_optimisers.py usr/lib/python3/dist-packages/cogent3/maths/scipy_optimize.py usr/lib/python3/dist-packages/cogent3/maths/simannealingoptimiser.py usr/lib/python3/dist-packages/cogent3/maths/solve.py usr/lib/python3/dist-packages/cogent3/maths/stats usr/lib/python3/dist-packages/cogent3/maths/stats/__init__.py usr/lib/python3/dist-packages/cogent3/maths/stats/contingency.py usr/lib/python3/dist-packages/cogent3/maths/stats/information_criteria.py usr/lib/python3/dist-packages/cogent3/maths/stats/jackknife.py usr/lib/python3/dist-packages/cogent3/maths/stats/kendall.py usr/lib/python3/dist-packages/cogent3/maths/stats/ks.py usr/lib/python3/dist-packages/cogent3/maths/stats/number.py usr/lib/python3/dist-packages/cogent3/maths/stats/period.py usr/lib/python3/dist-packages/cogent3/maths/stats/test.py usr/lib/python3/dist-packages/cogent3/maths/util.py usr/lib/python3/dist-packages/cogent3/parse usr/lib/python3/dist-packages/cogent3/parse/__init__.py usr/lib/python3/dist-packages/cogent3/parse/blast.py usr/lib/python3/dist-packages/cogent3/parse/blast_xml.py usr/lib/python3/dist-packages/cogent3/parse/cigar.py usr/lib/python3/dist-packages/cogent3/parse/cisbp.py usr/lib/python3/dist-packages/cogent3/parse/clustal.py usr/lib/python3/dist-packages/cogent3/parse/cogent3_json.py usr/lib/python3/dist-packages/cogent3/parse/dialign.py usr/lib/python3/dist-packages/cogent3/parse/ebi.py usr/lib/python3/dist-packages/cogent3/parse/fasta.py usr/lib/python3/dist-packages/cogent3/parse/fastq.py usr/lib/python3/dist-packages/cogent3/parse/gbseq.py usr/lib/python3/dist-packages/cogent3/parse/gcg.py usr/lib/python3/dist-packages/cogent3/parse/genbank.py usr/lib/python3/dist-packages/cogent3/parse/gff.py usr/lib/python3/dist-packages/cogent3/parse/greengenes.py usr/lib/python3/dist-packages/cogent3/parse/jaspar.py usr/lib/python3/dist-packages/cogent3/parse/locuslink.py usr/lib/python3/dist-packages/cogent3/parse/ncbi_taxonomy.py usr/lib/python3/dist-packages/cogent3/parse/newick.py usr/lib/python3/dist-packages/cogent3/parse/nexus.py usr/lib/python3/dist-packages/cogent3/parse/paml.py usr/lib/python3/dist-packages/cogent3/parse/paml_matrix.py usr/lib/python3/dist-packages/cogent3/parse/phylip.py usr/lib/python3/dist-packages/cogent3/parse/psl.py usr/lib/python3/dist-packages/cogent3/parse/rdb.py usr/lib/python3/dist-packages/cogent3/parse/record.py usr/lib/python3/dist-packages/cogent3/parse/record_finder.py usr/lib/python3/dist-packages/cogent3/parse/sequence.py usr/lib/python3/dist-packages/cogent3/parse/table.py usr/lib/python3/dist-packages/cogent3/parse/tinyseq.py usr/lib/python3/dist-packages/cogent3/parse/tree.py usr/lib/python3/dist-packages/cogent3/parse/unigene.py usr/lib/python3/dist-packages/cogent3/phylo usr/lib/python3/dist-packages/cogent3/phylo/__init__.py usr/lib/python3/dist-packages/cogent3/phylo/consensus.py usr/lib/python3/dist-packages/cogent3/phylo/least_squares.py usr/lib/python3/dist-packages/cogent3/phylo/maximum_likelihood.py usr/lib/python3/dist-packages/cogent3/phylo/nj.py usr/lib/python3/dist-packages/cogent3/phylo/tree_collection.py usr/lib/python3/dist-packages/cogent3/phylo/tree_distance.py usr/lib/python3/dist-packages/cogent3/phylo/tree_space.py usr/lib/python3/dist-packages/cogent3/phylo/util.py usr/lib/python3/dist-packages/cogent3/py.typed usr/lib/python3/dist-packages/cogent3/recalculation usr/lib/python3/dist-packages/cogent3/recalculation/__init__.py usr/lib/python3/dist-packages/cogent3/recalculation/calculation.py usr/lib/python3/dist-packages/cogent3/recalculation/definition.py usr/lib/python3/dist-packages/cogent3/recalculation/scope.py usr/lib/python3/dist-packages/cogent3/recalculation/setting.py usr/lib/python3/dist-packages/cogent3/util usr/lib/python3/dist-packages/cogent3/util/__init__.py usr/lib/python3/dist-packages/cogent3/util/checkpointing.py usr/lib/python3/dist-packages/cogent3/util/deserialise.py usr/lib/python3/dist-packages/cogent3/util/dict_array.py usr/lib/python3/dist-packages/cogent3/util/io.py usr/lib/python3/dist-packages/cogent3/util/misc.py usr/lib/python3/dist-packages/cogent3/util/parallel.py usr/lib/python3/dist-packages/cogent3/util/progress_display.py usr/lib/python3/dist-packages/cogent3/util/transform.py usr/lib/python3/dist-packages/cogent3/util/union_dict.py usr/lib/python3/dist-packages/cogent3/util/warning.py usr/lib/python3/dist-packages/cogent3-2026.6.2a0.dist-info usr/lib/python3/dist-packages/cogent3-2026.6.2a0.dist-info/INSTALLER usr/lib/python3/dist-packages/cogent3-2026.6.2a0.dist-info/METADATA usr/lib/python3/dist-packages/cogent3-2026.6.2a0.dist-info/WHEEL usr/lib/python3/dist-packages/cogent3-2026.6.2a0.dist-info/entry_points.txt usr/share usr/share/doc usr/share/doc/python3-cogent3 usr/share/doc/python3-cogent3/changelog.Debian.gz usr/share/doc/python3-cogent3/changelog.gz usr/share/doc/python3-cogent3/copyright