gubbins (3.4.3-4)

3 versions available in kali/kali-last-snapshot/main/i386

Details

Core information at a glance

Distribution
kali
Origin
kali-last-snapshot
Repository
https://http.kali.org/kali
Codename
kali-last-snapshot
Component
main
Source
none
Architecture
i386
Section
science
Priority
optional
Maintainer
Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
520 B
Size expected
99.1 kB
Size actual
99.1 kB
Size match

Dependencies

Required package dependencies

  • libc6 (>= 2.38)
  • zlib1g (>= 1:1.1.4)
  • python3-biopython
  • python3-dendropy
  • python3-multiprocess
  • python3-numpy
  • python3-scipy
  • python3:any
  • python3
  • raxml

Suggested packages

Recommended additional packages

  • r-base-core

Description

phylogenetic analysis of genome sequences

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD511811ea1…691dcf93
SHA-124f796a4…0b471483
SHA-2561626f382…0bc84d3a
SHA-51297926ba8…f10dd678

Contents

Files and directories included

.
usr
usr/bin
usr/lib
usr/lib/gubbins
usr/lib/gubbins/gubbins
usr/lib/i386-linux-gnu
usr/lib/i386-linux-gnu/libgubbins.so.0.0.1
usr/share
usr/share/doc
usr/share/doc/gubbins
usr/share/doc/gubbins/changelog.Debian.gz
usr/share/doc/gubbins/changelog.gz
usr/share/doc/gubbins/copyright
usr/share/gubbins
usr/share/gubbins/count_recombinations_per_gene.py
usr/share/gubbins/extract_gubbins_clade.py
usr/share/gubbins/extract_gubbins_clade_statistics.py
usr/share/gubbins/extract_recombinant_sequences.py
usr/share/gubbins/generate_files_for_clade_analysis.py
usr/share/gubbins/generate_ska_alignment.py
usr/share/gubbins/gubbins
usr/share/gubbins/gubbins/PreProcessFasta.py
usr/share/gubbins/gubbins/ValidateFastaAlignment.py
usr/share/gubbins/gubbins/__init__.py
usr/share/gubbins/gubbins/common.py
usr/share/gubbins/gubbins/pyjar.py
usr/share/gubbins/gubbins/run_gubbins.py
usr/share/gubbins/gubbins/tests
usr/share/gubbins/gubbins/tests/__init__.py
usr/share/gubbins/gubbins/tests/test_alignment_python_methods.py
usr/share/gubbins/gubbins/tests/test_converging_recombinations.py
usr/share/gubbins/gubbins/tests/test_dependencies.py
usr/share/gubbins/gubbins/tests/test_pre_process_fasta.py
usr/share/gubbins/gubbins/tests/test_python_scripts.py
usr/share/gubbins/gubbins/tests/test_tree_methods.py
usr/share/gubbins/gubbins/tests/test_treebuilders.py
usr/share/gubbins/gubbins/tests/test_utils.py
usr/share/gubbins/gubbins/tests/test_validate_fasta_input.py
usr/share/gubbins/gubbins/tests/test_validate_starting_tree.py
usr/share/gubbins/gubbins/treebuilders.py
usr/share/gubbins/gubbins/utils.py
usr/share/gubbins/gubbins-3.4.2.egg-info
usr/share/gubbins/gubbins-3.4.2.egg-info/PKG-INFO
usr/share/gubbins/gubbins-3.4.2.egg-info/dependency_links.txt
usr/share/gubbins/gubbins-3.4.2.egg-info/entry_points.txt
usr/share/gubbins/gubbins-3.4.2.egg-info/requires.txt
usr/share/gubbins/gubbins-3.4.2.egg-info/top_level.txt
usr/share/gubbins/gubbins_alignment_checker.py
usr/share/gubbins/mask_gubbins_aln.py
usr/share/gubbins/plot_gubbins.R
usr/share/gubbins/run_gubbins.py
usr/share/lintian
usr/share/lintian/overrides
usr/share/lintian/overrides/gubbins
usr/share/man
usr/share/man/man1
usr/share/man/man1/run_gubbins.1.gz
usr/share/python3
usr/share/python3/runtime.d
usr/share/python3/runtime.d/gubbins.rtupdate
usr/bin/run_gubbins
usr/lib/i386-linux-gnu/libgubbins.so
usr/lib/i386-linux-gnu/libgubbins.so.0