hmmer-examples (3.4+dfsg-3)
Details
Core information at a glance
- Distribution
- kali
- Origin
- kali-last-snapshot
- Repository
- https://http.kali.org/kali
- Codename
- kali-last-snapshot
- Component
- main
- Source
- hmmer
- Architecture
- i386
- Section
- doc
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 31.9 kB
- Size expected
- 31 MB
- Size actual
- 31 MB
- Size match
Suggested packages
Recommended additional packages
- None
Description
profile hidden Markov models for protein sequence analysis (examples)
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 28cd74c9…6eba0672 | |
| SHA-1 | 2e7ac0bf…c7be983b | |
| SHA-256 | 0fd8ac39…2c479bb6 | |
| SHA-512 | e977d0a4…1061ddbc |
Contents
Files and directories included
. usr usr/share usr/share/doc usr/share/doc/hmmer usr/share/doc/hmmer/examples usr/share/doc/hmmer/examples/easel usr/share/doc/hmmer/examples/easel/.travis.yml usr/share/doc/hmmer/examples/easel/LICENSE usr/share/doc/hmmer/examples/easel/Makefile.gz usr/share/doc/hmmer/examples/easel/Makefile.in.gz usr/share/doc/hmmer/examples/easel/README.md usr/share/doc/hmmer/examples/easel/config.guess.gz usr/share/doc/hmmer/examples/easel/config.sub.gz usr/share/doc/hmmer/examples/easel/configure.ac.gz usr/share/doc/hmmer/examples/easel/decoy_config.h usr/share/doc/hmmer/examples/easel/decoy_config.h.in usr/share/doc/hmmer/examples/easel/demotic usr/share/doc/hmmer/examples/easel/demotic/00README.gz usr/share/doc/hmmer/examples/easel/demotic/blast2profmark usr/share/doc/hmmer/examples/easel/demotic/blast2tbl usr/share/doc/hmmer/examples/easel/demotic/demotic_blast.pm.gz usr/share/doc/hmmer/examples/easel/demotic/demotic_fasta.pm.gz usr/share/doc/hmmer/examples/easel/demotic/demotic_h2.pm.gz usr/share/doc/hmmer/examples/easel/demotic/demotic_hmmer.pm.gz usr/share/doc/hmmer/examples/easel/demotic/demotic_infernal_tab.pm.gz usr/share/doc/hmmer/examples/easel/demotic/examples usr/share/doc/hmmer/examples/easel/demotic/examples/example-single-psiquery.fa usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.asnt.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.phr.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.pin usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.fa.psq.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.pbl.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example-single.sto.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.fa usr/share/doc/hmmer/examples/easel/demotic/examples/example.fasta.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.h2.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.hmm.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.hmm2.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.hmmsearch.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.ncbi-blastp.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.phmmer.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.psiblast.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.ssearch.out.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.sto.gz usr/share/doc/hmmer/examples/easel/demotic/examples/example.wu-blastp.out.gz usr/share/doc/hmmer/examples/easel/demotic/fasta2profmark usr/share/doc/hmmer/examples/easel/demotic/fasta2tbl usr/share/doc/hmmer/examples/easel/demotic/h22profmark usr/share/doc/hmmer/examples/easel/demotic/h22tbl usr/share/doc/hmmer/examples/easel/demotic/hmmer2profmark usr/share/doc/hmmer/examples/easel/demotic/hmmer2tbl usr/share/doc/hmmer/examples/easel/demotic/infernal_tab2gff.pl.gz usr/share/doc/hmmer/examples/easel/demotic/regress usr/share/doc/hmmer/examples/easel/demotic/regress/fasta-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/fasta-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/h2-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/h2-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/hmmsearch-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/hmmsearch-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/ncbi-blastp-profmark.out usr/share/doc/hmmer/examples/easel/demotic/regress/ncbi-blastp-tbl.out usr/share/doc/hmmer/examples/easel/demotic/regress/phmmer-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/phmmer-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/psiblast-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/psiblast-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/ssearch-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/ssearch-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/wu-blastp-profmark.out.gz usr/share/doc/hmmer/examples/easel/demotic/regress/wu-blastp-tbl.out.gz usr/share/doc/hmmer/examples/easel/demotic/test.pl usr/share/doc/hmmer/examples/easel/devkit usr/share/doc/hmmer/examples/easel/devkit/00README usr/share/doc/hmmer/examples/easel/devkit/autodoc.gz usr/share/doc/hmmer/examples/easel/devkit/autodoc.md.gz usr/share/doc/hmmer/examples/easel/devkit/autodoc.py.gz usr/share/doc/hmmer/examples/easel/devkit/c2optlist usr/share/doc/hmmer/examples/easel/devkit/cexcerpt usr/share/doc/hmmer/examples/easel/devkit/cexcerpt.man usr/share/doc/hmmer/examples/easel/devkit/ctags-fix usr/share/doc/hmmer/examples/easel/devkit/man2optlist usr/share/doc/hmmer/examples/easel/devkit/rmanprocess.pl usr/share/doc/hmmer/examples/easel/devkit/rmanprocess.py usr/share/doc/hmmer/examples/easel/devkit/sedition usr/share/doc/hmmer/examples/easel/devkit/sedition-pp usr/share/doc/hmmer/examples/easel/devkit/sqc.gz usr/share/doc/hmmer/examples/easel/devkit/techtree.py.gz usr/share/doc/hmmer/examples/easel/documentation usr/share/doc/hmmer/examples/easel/documentation/Makefile.gz usr/share/doc/hmmer/examples/easel/documentation/Makefile.in.gz usr/share/doc/hmmer/examples/easel/documentation/codestyle.md.gz usr/share/doc/hmmer/examples/easel/documentation/codestyle.tex.gz usr/share/doc/hmmer/examples/easel/documentation/copyright.tex usr/share/doc/hmmer/examples/easel/documentation/doctricks.tex usr/share/doc/hmmer/examples/easel/documentation/figures usr/share/doc/hmmer/examples/easel/documentation/figures/easel_techtree.ai.gz usr/share/doc/hmmer/examples/easel/documentation/figures/easel_techtree.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/easel_techtree.png usr/share/doc/hmmer/examples/easel/documentation/figures/evd_basic.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/evd_location.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/evd_scale.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/gev_density.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/gev_logdensity.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rna_elements.ai.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rna_elements.eps.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rna_elements.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-bsu-alignment.ai.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-bsu-alignment.eps.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-bsu-alignment.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-ecoli.ai.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-ecoli.eps.gz usr/share/doc/hmmer/examples/easel/documentation/figures/rnaseP-ecoli.pdf.gz usr/share/doc/hmmer/examples/easel/documentation/format_a2m.tex.gz usr/share/doc/hmmer/examples/easel/documentation/format_ncbi.tex.gz usr/share/doc/hmmer/examples/easel/documentation/format_stockholm.tex.gz usr/share/doc/hmmer/examples/easel/documentation/format_wuss.tex.gz usr/share/doc/hmmer/examples/easel/documentation/install.tex usr/share/doc/hmmer/examples/easel/documentation/installation.tex usr/share/doc/hmmer/examples/easel/documentation/intro.tex.gz usr/share/doc/hmmer/examples/easel/documentation/macros.tex usr/share/doc/hmmer/examples/easel/documentation/main.tex.gz usr/share/doc/hmmer/examples/easel/documentation/statistics.tex usr/share/doc/hmmer/examples/easel/documentation/titlepage.tex usr/share/doc/hmmer/examples/easel/documentation/typography.tex usr/share/doc/hmmer/examples/easel/easel.c.gz usr/share/doc/hmmer/examples/easel/easel.h.gz usr/share/doc/hmmer/examples/easel/easel.tex.gz usr/share/doc/hmmer/examples/easel/easel_utest.gz usr/share/doc/hmmer/examples/easel/esl_alloc.c.gz usr/share/doc/hmmer/examples/easel/esl_alloc.h usr/share/doc/hmmer/examples/easel/esl_alloc.md.gz usr/share/doc/hmmer/examples/easel/esl_alloc_utest.gz usr/share/doc/hmmer/examples/easel/esl_alphabet.c.gz usr/share/doc/hmmer/examples/easel/esl_alphabet.h.gz usr/share/doc/hmmer/examples/easel/esl_alphabet.tex.gz usr/share/doc/hmmer/examples/easel/esl_alphabet_utest.gz usr/share/doc/hmmer/examples/easel/esl_arr2.c usr/share/doc/hmmer/examples/easel/esl_arr2.h usr/share/doc/hmmer/examples/easel/esl_arr3.c usr/share/doc/hmmer/examples/easel/esl_arr3.h usr/share/doc/hmmer/examples/easel/esl_avx.c.gz usr/share/doc/hmmer/examples/easel/esl_avx.h.gz usr/share/doc/hmmer/examples/easel/esl_avx512.c.gz usr/share/doc/hmmer/examples/easel/esl_avx512.h.gz usr/share/doc/hmmer/examples/easel/esl_avx512_utest.gz usr/share/doc/hmmer/examples/easel/esl_avx_utest.gz usr/share/doc/hmmer/examples/easel/esl_bitfield.c.gz usr/share/doc/hmmer/examples/easel/esl_bitfield.h usr/share/doc/hmmer/examples/easel/esl_bitfield_utest.gz usr/share/doc/hmmer/examples/easel/esl_buffer.c.gz usr/share/doc/hmmer/examples/easel/esl_buffer.h.gz usr/share/doc/hmmer/examples/easel/esl_buffer.tex.gz usr/share/doc/hmmer/examples/easel/esl_buffer_utest.gz usr/share/doc/hmmer/examples/easel/esl_cluster.c.gz usr/share/doc/hmmer/examples/easel/esl_cluster.h usr/share/doc/hmmer/examples/easel/esl_cluster.tex usr/share/doc/hmmer/examples/easel/esl_cluster_utest.gz usr/share/doc/hmmer/examples/easel/esl_composition.c.gz usr/share/doc/hmmer/examples/easel/esl_composition.h usr/share/doc/hmmer/examples/easel/esl_config.h usr/share/doc/hmmer/examples/easel/esl_config.h.in usr/share/doc/hmmer/examples/easel/esl_cpu.c.gz usr/share/doc/hmmer/examples/easel/esl_cpu.h usr/share/doc/hmmer/examples/easel/esl_cpu_utest.gz usr/share/doc/hmmer/examples/easel/esl_dirichlet.c.gz usr/share/doc/hmmer/examples/easel/esl_dirichlet.h usr/share/doc/hmmer/examples/easel/esl_dirichlet.tex usr/share/doc/hmmer/examples/easel/esl_dirichlet_utest.gz usr/share/doc/hmmer/examples/easel/esl_distance.c.gz usr/share/doc/hmmer/examples/easel/esl_distance.h usr/share/doc/hmmer/examples/easel/esl_distance.tex.gz usr/share/doc/hmmer/examples/easel/esl_distance_utest.gz usr/share/doc/hmmer/examples/easel/esl_dmatrix.c.gz usr/share/doc/hmmer/examples/easel/esl_dmatrix.h usr/share/doc/hmmer/examples/easel/esl_dmatrix.tex.gz usr/share/doc/hmmer/examples/easel/esl_dmatrix_utest.gz usr/share/doc/hmmer/examples/easel/esl_dsqdata.c.gz usr/share/doc/hmmer/examples/easel/esl_dsqdata.h.gz usr/share/doc/hmmer/examples/easel/esl_dsqdata.md.gz usr/share/doc/hmmer/examples/easel/esl_dsqdata.tex.gz usr/share/doc/hmmer/examples/easel/esl_dsqdata_utest.gz usr/share/doc/hmmer/examples/easel/esl_exponential.c.gz 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usr/share/doc/hmmer/examples/easel/esl_getopts_utest.gz usr/share/doc/hmmer/examples/easel/esl_gev.c.gz usr/share/doc/hmmer/examples/easel/esl_gev.h usr/share/doc/hmmer/examples/easel/esl_gev.tex.gz usr/share/doc/hmmer/examples/easel/esl_graph.c.gz usr/share/doc/hmmer/examples/easel/esl_graph.h usr/share/doc/hmmer/examples/easel/esl_graph_utest.gz usr/share/doc/hmmer/examples/easel/esl_gumbel.c.gz usr/share/doc/hmmer/examples/easel/esl_gumbel.h usr/share/doc/hmmer/examples/easel/esl_gumbel.tex.gz usr/share/doc/hmmer/examples/easel/esl_gumbel_utest.gz usr/share/doc/hmmer/examples/easel/esl_heap.c.gz usr/share/doc/hmmer/examples/easel/esl_heap.h usr/share/doc/hmmer/examples/easel/esl_heap_utest.gz usr/share/doc/hmmer/examples/easel/esl_histogram.c.gz usr/share/doc/hmmer/examples/easel/esl_histogram.h.gz usr/share/doc/hmmer/examples/easel/esl_histogram.tex.gz usr/share/doc/hmmer/examples/easel/esl_histogram_utest.gz usr/share/doc/hmmer/examples/easel/esl_hmm.c.gz usr/share/doc/hmmer/examples/easel/esl_hmm.h usr/share/doc/hmmer/examples/easel/esl_hmm_utest.gz usr/share/doc/hmmer/examples/easel/esl_huffman.c.gz usr/share/doc/hmmer/examples/easel/esl_huffman.h usr/share/doc/hmmer/examples/easel/esl_huffman_utest.gz usr/share/doc/hmmer/examples/easel/esl_hyperexp.c.gz usr/share/doc/hmmer/examples/easel/esl_hyperexp.h usr/share/doc/hmmer/examples/easel/esl_hyperexp.tex usr/share/doc/hmmer/examples/easel/esl_hyperexp_utest.gz usr/share/doc/hmmer/examples/easel/esl_iset.c.gz usr/share/doc/hmmer/examples/easel/esl_iset.h usr/share/doc/hmmer/examples/easel/esl_iset_utest.gz usr/share/doc/hmmer/examples/easel/esl_json.c.gz usr/share/doc/hmmer/examples/easel/esl_json.h.gz usr/share/doc/hmmer/examples/easel/esl_json_utest.gz usr/share/doc/hmmer/examples/easel/esl_keyhash.c.gz usr/share/doc/hmmer/examples/easel/esl_keyhash.h usr/share/doc/hmmer/examples/easel/esl_keyhash.tex usr/share/doc/hmmer/examples/easel/esl_keyhash_utest.gz 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