htslib-test (1.22.1+ds2-1)
Details
Core information at a glance
- Distribution
- kali
- Origin
- kali-last-snapshot
- Repository
- https://http.kali.org/kali
- Codename
- kali-last-snapshot
- Component
- main
- Source
- htslib
- Architecture
- i386
- Section
- libs
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 8.4 kB
- Size expected
- 1.2 MB
- Size actual
- 1.2 MB
- Size match
Suggested packages
Recommended additional packages
- None
Description
Test data for HTSlib
Tags
Package classification tags
role::shared-lib
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 989e9177…6369139a | |
| SHA-1 | 04de49f4…babd1006 | |
| SHA-256 | 0e885498…581d1bc1 | |
| SHA-512 | 6c42309f…36ffb14a |
Contents
Files and directories included
. usr usr/share usr/share/doc usr/share/doc/htslib-test usr/share/doc/htslib-test/changelog.Debian.gz usr/share/doc/htslib-test/changelog.gz usr/share/doc/htslib-test/copyright usr/share/doc/libhts-dev usr/share/doc/libhts-dev/run-unit-test usr/share/htslib-test usr/share/htslib-test/Makefile usr/share/htslib-test/annot-tsv.c usr/share/htslib-test/bcf_sr_sort.c usr/share/htslib-test/bcf_sr_sort.h usr/share/htslib-test/bgzf.c usr/share/htslib-test/bgzip.c usr/share/htslib-test/builddir_vars.mk.in usr/share/htslib-test/config.h.in usr/share/htslib-test/config.mk.in usr/share/htslib-test/configure.ac usr/share/htslib-test/cram usr/share/htslib-test/cram/cram.h usr/share/htslib-test/cram/cram_codecs.c usr/share/htslib-test/cram/cram_codecs.h usr/share/htslib-test/cram/cram_decode.c usr/share/htslib-test/cram/cram_decode.h usr/share/htslib-test/cram/cram_encode.c usr/share/htslib-test/cram/cram_encode.h usr/share/htslib-test/cram/cram_external.c usr/share/htslib-test/cram/cram_index.c usr/share/htslib-test/cram/cram_index.h usr/share/htslib-test/cram/cram_io.c usr/share/htslib-test/cram/cram_io.h usr/share/htslib-test/cram/cram_samtools.h usr/share/htslib-test/cram/cram_stats.c usr/share/htslib-test/cram/cram_stats.h usr/share/htslib-test/cram/cram_structs.h usr/share/htslib-test/cram/mFILE.c usr/share/htslib-test/cram/mFILE.h usr/share/htslib-test/cram/misc.h usr/share/htslib-test/cram/open_trace_file.c usr/share/htslib-test/cram/open_trace_file.h usr/share/htslib-test/cram/os.h usr/share/htslib-test/cram/pooled_alloc.c usr/share/htslib-test/cram/pooled_alloc.h usr/share/htslib-test/cram/string_alloc.c usr/share/htslib-test/cram/string_alloc.h usr/share/htslib-test/errmod.c usr/share/htslib-test/faidx.c usr/share/htslib-test/fuzz_settings.h usr/share/htslib-test/header.c usr/share/htslib-test/header.h usr/share/htslib-test/hfile.c usr/share/htslib-test/hfile_gcs.c usr/share/htslib-test/hfile_internal.h usr/share/htslib-test/hfile_libcurl.c usr/share/htslib-test/hfile_s3.c usr/share/htslib-test/hfile_s3_write.c usr/share/htslib-test/hts.c usr/share/htslib-test/hts_expr.c usr/share/htslib-test/hts_internal.h usr/share/htslib-test/hts_os.c usr/share/htslib-test/hts_time_funcs.h usr/share/htslib-test/htscodecs_bundled.mk usr/share/htslib-test/htscodecs_external.mk usr/share/htslib-test/htsfile.c usr/share/htslib-test/htslib.mk usr/share/htslib-test/htslib.pc.in usr/share/htslib-test/htslib_vars.mk usr/share/htslib-test/kfunc.c usr/share/htslib-test/kstring.c usr/share/htslib-test/m4 usr/share/htslib-test/m4/hts_check_compile_flags_needed.m4 usr/share/htslib-test/m4/hts_hide_dynamic_syms.m4 usr/share/htslib-test/m4/hts_prog_cc_warnings.m4 usr/share/htslib-test/m4/pkg.m4 usr/share/htslib-test/md5.c usr/share/htslib-test/multipart.c usr/share/htslib-test/os usr/share/htslib-test/os/lzma_stub.h usr/share/htslib-test/os/rand.c usr/share/htslib-test/plugin.c usr/share/htslib-test/probaln.c usr/share/htslib-test/realn.c usr/share/htslib-test/ref_cache usr/share/htslib-test/ref_cache/cmsg_wrap.c usr/share/htslib-test/ref_cache/cmsg_wrap.h usr/share/htslib-test/ref_cache/http_parser.c usr/share/htslib-test/ref_cache/http_parser.h usr/share/htslib-test/ref_cache/listener.c usr/share/htslib-test/ref_cache/listener.h usr/share/htslib-test/ref_cache/log_files.c usr/share/htslib-test/ref_cache/log_files.h usr/share/htslib-test/ref_cache/main.c usr/share/htslib-test/ref_cache/misc.c usr/share/htslib-test/ref_cache/misc.h usr/share/htslib-test/ref_cache/options.h usr/share/htslib-test/ref_cache/ping.c usr/share/htslib-test/ref_cache/ping.h usr/share/htslib-test/ref_cache/poll_wrap.h usr/share/htslib-test/ref_cache/poll_wrap_epoll.c usr/share/htslib-test/ref_cache/poll_wrap_poll.c usr/share/htslib-test/ref_cache/ref_files.c usr/share/htslib-test/ref_cache/ref_files.h usr/share/htslib-test/ref_cache/request_handler.c usr/share/htslib-test/ref_cache/request_handler.h usr/share/htslib-test/ref_cache/sendfile_wrap.c usr/share/htslib-test/ref_cache/sendfile_wrap.h usr/share/htslib-test/ref_cache/server.c usr/share/htslib-test/ref_cache/server.h usr/share/htslib-test/ref_cache/transaction.c usr/share/htslib-test/ref_cache/transaction.h usr/share/htslib-test/ref_cache/types.h usr/share/htslib-test/ref_cache/upstream.c usr/share/htslib-test/ref_cache/upstream.h usr/share/htslib-test/regidx.c usr/share/htslib-test/region.c usr/share/htslib-test/sam.c usr/share/htslib-test/sam_internal.h usr/share/htslib-test/sam_mods.c usr/share/htslib-test/simd.c usr/share/htslib-test/synced_bcf_reader.c usr/share/htslib-test/tabix.c usr/share/htslib-test/tbx.c usr/share/htslib-test/test usr/share/htslib-test/test/annot-tsv usr/share/htslib-test/test/annot-tsv/dst.1.txt usr/share/htslib-test/test/annot-tsv/dst.10.txt usr/share/htslib-test/test/annot-tsv/dst.11.txt usr/share/htslib-test/test/annot-tsv/dst.12.txt usr/share/htslib-test/test/annot-tsv/dst.14.txt usr/share/htslib-test/test/annot-tsv/dst.2.txt usr/share/htslib-test/test/annot-tsv/dst.3.txt usr/share/htslib-test/test/annot-tsv/dst.4.txt usr/share/htslib-test/test/annot-tsv/dst.5.txt usr/share/htslib-test/test/annot-tsv/dst.6.txt usr/share/htslib-test/test/annot-tsv/dst.7.txt usr/share/htslib-test/test/annot-tsv/dst.8.txt usr/share/htslib-test/test/annot-tsv/dst.9.txt usr/share/htslib-test/test/annot-tsv/out.1.1.txt usr/share/htslib-test/test/annot-tsv/out.1.2.txt usr/share/htslib-test/test/annot-tsv/out.1.3.txt usr/share/htslib-test/test/annot-tsv/out.1.4.txt usr/share/htslib-test/test/annot-tsv/out.1.5.txt usr/share/htslib-test/test/annot-tsv/out.1.6.txt usr/share/htslib-test/test/annot-tsv/out.10.1.txt usr/share/htslib-test/test/annot-tsv/out.10.2.txt usr/share/htslib-test/test/annot-tsv/out.10.3.txt usr/share/htslib-test/test/annot-tsv/out.10.4.txt usr/share/htslib-test/test/annot-tsv/out.10.5.txt usr/share/htslib-test/test/annot-tsv/out.10.6.txt usr/share/htslib-test/test/annot-tsv/out.11.1.txt usr/share/htslib-test/test/annot-tsv/out.11.2.txt usr/share/htslib-test/test/annot-tsv/out.11.3.txt usr/share/htslib-test/test/annot-tsv/out.12.1.txt usr/share/htslib-test/test/annot-tsv/out.13.1.txt usr/share/htslib-test/test/annot-tsv/out.13.2.txt usr/share/htslib-test/test/annot-tsv/out.13.3.txt usr/share/htslib-test/test/annot-tsv/out.13.4.txt usr/share/htslib-test/test/annot-tsv/out.14.1.txt usr/share/htslib-test/test/annot-tsv/out.14.2.txt usr/share/htslib-test/test/annot-tsv/out.2.1.txt usr/share/htslib-test/test/annot-tsv/out.2.2.txt usr/share/htslib-test/test/annot-tsv/out.2.3.txt usr/share/htslib-test/test/annot-tsv/out.2.4.txt usr/share/htslib-test/test/annot-tsv/out.2.5.txt usr/share/htslib-test/test/annot-tsv/out.2.6.txt usr/share/htslib-test/test/annot-tsv/out.3.1.txt usr/share/htslib-test/test/annot-tsv/out.4.1.txt usr/share/htslib-test/test/annot-tsv/out.5.1.txt usr/share/htslib-test/test/annot-tsv/out.6.1.txt usr/share/htslib-test/test/annot-tsv/out.7.1.txt usr/share/htslib-test/test/annot-tsv/out.8.1.txt usr/share/htslib-test/test/annot-tsv/out.9.1.txt usr/share/htslib-test/test/annot-tsv/src.1.txt usr/share/htslib-test/test/annot-tsv/src.10.txt usr/share/htslib-test/test/annot-tsv/src.11.txt usr/share/htslib-test/test/annot-tsv/src.12.txt usr/share/htslib-test/test/annot-tsv/src.13.txt usr/share/htslib-test/test/annot-tsv/src.14.txt usr/share/htslib-test/test/annot-tsv/src.2.txt usr/share/htslib-test/test/annot-tsv/src.3.txt usr/share/htslib-test/test/annot-tsv/src.4.txt usr/share/htslib-test/test/annot-tsv/src.5.txt usr/share/htslib-test/test/annot-tsv/src.6.txt usr/share/htslib-test/test/annot-tsv/src.7.txt usr/share/htslib-test/test/annot-tsv/src.8.txt usr/share/htslib-test/test/annot-tsv/src.9.txt usr/share/htslib-test/test/auxf#values.sam usr/share/htslib-test/test/auxf#values_java.cram usr/share/htslib-test/test/auxf.fa usr/share/htslib-test/test/auxf.fa.fai usr/share/htslib-test/test/base_mods usr/share/htslib-test/test/base_mods/MM-MNf1.sam usr/share/htslib-test/test/base_mods/MM-MNf2.sam usr/share/htslib-test/test/base_mods/MM-MNp.sam usr/share/htslib-test/test/base_mods/MM-bounds+.sam usr/share/htslib-test/test/base_mods/MM-bounds-.sam usr/share/htslib-test/test/base_mods/MM-chebi.out usr/share/htslib-test/test/base_mods/MM-chebi.sam usr/share/htslib-test/test/base_mods/MM-double.out usr/share/htslib-test/test/base_mods/MM-double.sam usr/share/htslib-test/test/base_mods/MM-explicit-f.out usr/share/htslib-test/test/base_mods/MM-explicit-x.out usr/share/htslib-test/test/base_mods/MM-explicit.out usr/share/htslib-test/test/base_mods/MM-explicit.sam usr/share/htslib-test/test/base_mods/MM-multi.out usr/share/htslib-test/test/base_mods/MM-multi.sam usr/share/htslib-test/test/base_mods/MM-not-all-modded.out usr/share/htslib-test/test/base_mods/MM-not-all-modded.sam usr/share/htslib-test/test/base_mods/MM-orient.sam usr/share/htslib-test/test/base_mods/MM-pileup.out usr/share/htslib-test/test/base_mods/MM-pileup.sam usr/share/htslib-test/test/base_mods/MM-pileup2.out usr/share/htslib-test/test/base_mods/MM-pileup2.sam usr/share/htslib-test/test/base_mods/base-mods.sh usr/share/htslib-test/test/base_mods/base-mods.tst usr/share/htslib-test/test/bcf-sr usr/share/htslib-test/test/bcf-sr/merge.noidx.a.vcf usr/share/htslib-test/test/bcf-sr/merge.noidx.abc.expected.out usr/share/htslib-test/test/bcf-sr/merge.noidx.b.vcf usr/share/htslib-test/test/bcf-sr/merge.noidx.c.vcf usr/share/htslib-test/test/bcf-sr/merge.noidx.hdr_order.vcf usr/share/htslib-test/test/bcf-sr/merge.noidx.rec_order.vcf usr/share/htslib-test/test/bcf-sr/weird-chr-names.1.out usr/share/htslib-test/test/bcf-sr/weird-chr-names.2.out usr/share/htslib-test/test/bcf-sr/weird-chr-names.3.out usr/share/htslib-test/test/bcf-sr/weird-chr-names.4.out usr/share/htslib-test/test/bcf-sr/weird-chr-names.5.out usr/share/htslib-test/test/bcf-sr/weird-chr-names.6.out usr/share/htslib-test/test/bcf-sr/weird-chr-names.vcf usr/share/htslib-test/test/bgzf_boundaries usr/share/htslib-test/test/bgzf_boundaries/bgzf_boundaries1.bam usr/share/htslib-test/test/bgzf_boundaries/bgzf_boundaries2.bam usr/share/htslib-test/test/bgzf_boundaries/bgzf_boundaries3.bam usr/share/htslib-test/test/bgziptest.txt usr/share/htslib-test/test/bgziptest.txt.gz usr/share/htslib-test/test/bgziptest.txt.gz.gzi usr/share/htslib-test/test/c1#bounds.sam usr/share/htslib-test/test/c1#clip.sam usr/share/htslib-test/test/c1#noseq.sam usr/share/htslib-test/test/c1#pad1.sam usr/share/htslib-test/test/c1#pad2.sam usr/share/htslib-test/test/c1#pad3.sam usr/share/htslib-test/test/c1#unknown.sam usr/share/htslib-test/test/c1.fa usr/share/htslib-test/test/c1.fa.fai usr/share/htslib-test/test/c2#pad.sam usr/share/htslib-test/test/c2.fa usr/share/htslib-test/test/c2.fa.fai usr/share/htslib-test/test/ce#1.sam usr/share/htslib-test/test/ce#1000.sam usr/share/htslib-test/test/ce#2.sam usr/share/htslib-test/test/ce#5.sam usr/share/htslib-test/test/ce#5b.sam usr/share/htslib-test/test/ce#5b_java.cram usr/share/htslib-test/test/ce#large_seq.sam usr/share/htslib-test/test/ce#supp.sam usr/share/htslib-test/test/ce#tag_depadded.sam usr/share/htslib-test/test/ce#tag_padded.sam usr/share/htslib-test/test/ce#unmap.sam usr/share/htslib-test/test/ce#unmap1.sam usr/share/htslib-test/test/ce#unmap2.sam usr/share/htslib-test/test/ce.fa usr/share/htslib-test/test/ce.fa.fai usr/share/htslib-test/test/colons.bam usr/share/htslib-test/test/colons.bam.bai usr/share/htslib-test/test/compare_sam.pl usr/share/htslib-test/test/cross_validate.sh usr/share/htslib-test/test/emptyfile usr/share/htslib-test/test/faidx usr/share/htslib-test/test/faidx/ce.1.expected.fa usr/share/htslib-test/test/faidx/faidx.1.expected.fa usr/share/htslib-test/test/faidx/faidx.fa usr/share/htslib-test/test/faidx/faidx.fa.expected.fai usr/share/htslib-test/test/faidx/faidx.tst usr/share/htslib-test/test/faidx/fastqs.1.expected.fq usr/share/htslib-test/test/faidx/fastqs.2.expected.fa usr/share/htslib-test/test/faidx/fastqs.fq usr/share/htslib-test/test/faidx/fastqs.fq.expected.fai usr/share/htslib-test/test/faidx/test-faidx.sh usr/share/htslib-test/test/fastq usr/share/htslib-test/test/fastq/fastq.tst usr/share/htslib-test/test/fastq/filter_casava-q.sam usr/share/htslib-test/test/fastq/filter_casava.fa usr/share/htslib-test/test/fastq/filter_casava.fq usr/share/htslib-test/test/fastq/filter_casava.sam usr/share/htslib-test/test/fastq/inter_aux-q.sam usr/share/htslib-test/test/fastq/inter_aux.sam usr/share/htslib-test/test/fastq/inter_casava-q.sam usr/share/htslib-test/test/fastq/inter_casava.sam usr/share/htslib-test/test/fastq/inter_casavaOX-q.sam usr/share/htslib-test/test/fastq/inter_casavaOX.sam usr/share/htslib-test/test/fastq/inter_noaux-q.sam usr/share/htslib-test/test/fastq/inter_noaux.sam usr/share/htslib-test/test/fastq/interleaved.fa usr/share/htslib-test/test/fastq/interleaved.fq usr/share/htslib-test/test/fastq/interleaved_casava.fa usr/share/htslib-test/test/fastq/interleaved_casava.fq usr/share/htslib-test/test/fastq/longline.fq usr/share/htslib-test/test/fastq/longline.sam usr/share/htslib-test/test/fastq/minimal-q.sam usr/share/htslib-test/test/fastq/minimal.fa usr/share/htslib-test/test/fastq/minimal.fq usr/share/htslib-test/test/fastq/minimal.sam usr/share/htslib-test/test/fastq/multiline-q.sam usr/share/htslib-test/test/fastq/multiline.fa usr/share/htslib-test/test/fastq/multiline.fq usr/share/htslib-test/test/fastq/multiline.sam usr/share/htslib-test/test/fastq/name2-q.sam usr/share/htslib-test/test/fastq/name2.fa usr/share/htslib-test/test/fastq/name2.fq usr/share/htslib-test/test/fastq/name2.sam usr/share/htslib-test/test/fastq/r1-q.sam usr/share/htslib-test/test/fastq/r1.fa usr/share/htslib-test/test/fastq/r1.fq usr/share/htslib-test/test/fastq/r1.sam usr/share/htslib-test/test/fastq/r2-q.sam usr/share/htslib-test/test/fastq/r2.fa usr/share/htslib-test/test/fastq/r2.fq usr/share/htslib-test/test/fastq/r2.sam usr/share/htslib-test/test/fastq/single.fa usr/share/htslib-test/test/fastq/single.fq usr/share/htslib-test/test/fastq/single_aux-q.sam usr/share/htslib-test/test/fastq/single_aux.sam usr/share/htslib-test/test/fastq/single_noaux-q.sam usr/share/htslib-test/test/fastq/single_noaux.sam usr/share/htslib-test/test/fastq/test-fastq.sh usr/share/htslib-test/test/fastqs_README.txt usr/share/htslib-test/test/fieldarith.c usr/share/htslib-test/test/fieldarith.sam usr/share/htslib-test/test/formatcols.vcf usr/share/htslib-test/test/formatmissing-out.vcf usr/share/htslib-test/test/formatmissing.vcf usr/share/htslib-test/test/fuzz usr/share/htslib-test/test/fuzz/hts_open_fuzzer.c usr/share/htslib-test/test/header_syms.pl usr/share/htslib-test/test/hfile.c usr/share/htslib-test/test/hts_endian.c usr/share/htslib-test/test/index.bam.bai usr/share/htslib-test/test/index.bam.csi usr/share/htslib-test/test/index.bcf.csi usr/share/htslib-test/test/index.cram.crai usr/share/htslib-test/test/index.sam usr/share/htslib-test/test/index.sam.gz.bai usr/share/htslib-test/test/index.sam.gz.csi usr/share/htslib-test/test/index.vcf usr/share/htslib-test/test/index.vcf.gz.csi usr/share/htslib-test/test/index.vcf.gz.tbi usr/share/htslib-test/test/index2.sam usr/share/htslib-test/test/index_dos.sam usr/share/htslib-test/test/longrefs usr/share/htslib-test/test/longrefs/index.expected1.vcf usr/share/htslib-test/test/longrefs/index.expected2.vcf usr/share/htslib-test/test/longrefs/index.vcf usr/share/htslib-test/test/longrefs/longref.sam usr/share/htslib-test/test/longrefs/longref_itr.expected.sam usr/share/htslib-test/test/longrefs/longref_multi.expected.sam usr/share/htslib-test/test/maintainer usr/share/htslib-test/test/maintainer/check_copyright.pl usr/share/htslib-test/test/maintainer/check_spaces.pl usr/share/htslib-test/test/md#1.sam usr/share/htslib-test/test/md.fa usr/share/htslib-test/test/md.fa.fai usr/share/htslib-test/test/modhdr.expected.vcf usr/share/htslib-test/test/modhdr.vcf.gz usr/share/htslib-test/test/modhdr.vcf.gz.csi usr/share/htslib-test/test/mpileup usr/share/htslib-test/test/mpileup/c1#pad1.out usr/share/htslib-test/test/mpileup/c1#pad1.sam usr/share/htslib-test/test/mpileup/c1#pad2.out usr/share/htslib-test/test/mpileup/c1#pad2.sam usr/share/htslib-test/test/mpileup/c1#pad3.out usr/share/htslib-test/test/mpileup/c1#pad3.sam usr/share/htslib-test/test/mpileup/mp_D.out usr/share/htslib-test/test/mpileup/mp_D.sam usr/share/htslib-test/test/mpileup/mp_DI.out usr/share/htslib-test/test/mpileup/mp_DI.sam usr/share/htslib-test/test/mpileup/mp_I.out usr/share/htslib-test/test/mpileup/mp_I.sam usr/share/htslib-test/test/mpileup/mp_ID.out usr/share/htslib-test/test/mpileup/mp_ID.sam usr/share/htslib-test/test/mpileup/mp_N.out usr/share/htslib-test/test/mpileup/mp_N.sam usr/share/htslib-test/test/mpileup/mp_N2.out usr/share/htslib-test/test/mpileup/mp_N2.sam usr/share/htslib-test/test/mpileup/mp_P.out usr/share/htslib-test/test/mpileup/mp_P.sam usr/share/htslib-test/test/mpileup/mp_overlap1.out usr/share/htslib-test/test/mpileup/mp_overlap1.sam usr/share/htslib-test/test/mpileup/mp_overlap2.out usr/share/htslib-test/test/mpileup/mp_overlap2.sam usr/share/htslib-test/test/mpileup/mpileup.tst usr/share/htslib-test/test/mpileup/small.bam usr/share/htslib-test/test/mpileup/small.out usr/share/htslib-test/test/mpileup/test-pileup.sh usr/share/htslib-test/test/no_hdr_sq_1.bam usr/share/htslib-test/test/no_hdr_sq_1.bam.csi usr/share/htslib-test/test/no_hdr_sq_1.expected.sam usr/share/htslib-test/test/noroundtrip-out.vcf usr/share/htslib-test/test/noroundtrip.vcf usr/share/htslib-test/test/pileup.c usr/share/htslib-test/test/pileup_mod.c usr/share/htslib-test/test/plugins-dlhts.c usr/share/htslib-test/test/range.bam usr/share/htslib-test/test/range.bam.bai usr/share/htslib-test/test/range.cram usr/share/htslib-test/test/range.cram.crai usr/share/htslib-test/test/range.out usr/share/htslib-test/test/range.out2 usr/share/htslib-test/test/realn01.fa usr/share/htslib-test/test/realn01.fa.fai usr/share/htslib-test/test/realn01.sam usr/share/htslib-test/test/realn01_exp-a.sam usr/share/htslib-test/test/realn01_exp-e.sam usr/share/htslib-test/test/realn01_exp.sam usr/share/htslib-test/test/realn02-r.sam usr/share/htslib-test/test/realn02.fa usr/share/htslib-test/test/realn02.fa.fai usr/share/htslib-test/test/realn02.sam usr/share/htslib-test/test/realn02_exp-a.sam usr/share/htslib-test/test/realn02_exp-e.sam usr/share/htslib-test/test/realn02_exp.sam usr/share/htslib-test/test/realn03.fa usr/share/htslib-test/test/realn03.fa.fai usr/share/htslib-test/test/realn03.sam usr/share/htslib-test/test/realn03_exp.sam usr/share/htslib-test/test/ref_cache usr/share/htslib-test/test/ref_cache/ce_m5.sam usr/share/htslib-test/test/sam.c usr/share/htslib-test/test/sam_filter usr/share/htslib-test/test/sam_filter/filter.sh usr/share/htslib-test/test/sam_filter/filter.tst usr/share/htslib-test/test/sam_filter/func1.out usr/share/htslib-test/test/sam_filter/func2.out usr/share/htslib-test/test/sam_filter/func3.out usr/share/htslib-test/test/sam_filter/func4.out usr/share/htslib-test/test/sam_filter/func5.out usr/share/htslib-test/test/sam_filter/func6.out usr/share/htslib-test/test/sam_filter/func7.out usr/share/htslib-test/test/sam_filter/func8.out usr/share/htslib-test/test/sam_filter/int1.out usr/share/htslib-test/test/sam_filter/int2.out usr/share/htslib-test/test/sam_filter/int3.out usr/share/htslib-test/test/sam_filter/string1.out usr/share/htslib-test/test/sam_filter/string2.out usr/share/htslib-test/test/sam_filter/string3.out usr/share/htslib-test/test/sam_filter/string4.out usr/share/htslib-test/test/sam_filter/string5.out usr/share/htslib-test/test/sam_filter/string6.out usr/share/htslib-test/test/sam_filter/string7.out usr/share/htslib-test/test/simple_test_driver.sh usr/share/htslib-test/test/tabix usr/share/htslib-test/test/tabix/bed_file.Y.100200.out usr/share/htslib-test/test/tabix/bed_file.bed usr/share/htslib-test/test/tabix/bed_file.separate.out usr/share/htslib-test/test/tabix/gff_file.X.2934832.2935190.out usr/share/htslib-test/test/tabix/gff_file.gff usr/share/htslib-test/test/tabix/large_chr.20.1.2147483647.out usr/share/htslib-test/test/tabix/large_chr.vcf usr/share/htslib-test/test/tabix/tabix.tst usr/share/htslib-test/test/tabix/test-tabix.sh usr/share/htslib-test/test/tabix/vcf_file.1.3000151.out usr/share/htslib-test/test/tabix/vcf_file.2.3199812.out usr/share/htslib-test/test/tabix/vcf_file.bcf usr/share/htslib-test/test/tabix/vcf_file.vcf usr/share/htslib-test/test/tabix.out usr/share/htslib-test/test/test-bcf-sr.c usr/share/htslib-test/test/test-bcf-sr.pl usr/share/htslib-test/test/test-bcf-translate.c usr/share/htslib-test/test/test-bcf-translate.out usr/share/htslib-test/test/test-bcf_set_variant_type.c usr/share/htslib-test/test/test-logging.pl usr/share/htslib-test/test/test-parse-reg.c usr/share/htslib-test/test/test-regidx.c usr/share/htslib-test/test/test-vcf-api.c usr/share/htslib-test/test/test-vcf-api.out usr/share/htslib-test/test/test-vcf-hdr-in.vcf usr/share/htslib-test/test/test-vcf-hdr.out usr/share/htslib-test/test/test-vcf-sweep.c usr/share/htslib-test/test/test-vcf-sweep.out usr/share/htslib-test/test/test.pl usr/share/htslib-test/test/test_bgzf.c usr/share/htslib-test/test/test_expr.c usr/share/htslib-test/test/test_faidx.c usr/share/htslib-test/test/test_index.c usr/share/htslib-test/test/test_introspection.c usr/share/htslib-test/test/test_kfunc.c usr/share/htslib-test/test/test_khash.c usr/share/htslib-test/test/test_kstring.c usr/share/htslib-test/test/test_mod.c usr/share/htslib-test/test/test_nibbles.c usr/share/htslib-test/test/test_realn.c usr/share/htslib-test/test/test_str2int.c usr/share/htslib-test/test/test_time_funcs.c usr/share/htslib-test/test/test_view.c usr/share/htslib-test/test/thrash_threads1.c usr/share/htslib-test/test/thrash_threads2.c usr/share/htslib-test/test/thrash_threads3.c usr/share/htslib-test/test/thrash_threads4.c usr/share/htslib-test/test/thrash_threads5.c usr/share/htslib-test/test/thrash_threads6.c usr/share/htslib-test/test/thrash_threads7.c usr/share/htslib-test/test/thread_pool.md usr/share/htslib-test/test/usepublic.cpp usr/share/htslib-test/test/vcf44_1.expected usr/share/htslib-test/test/vcf44_1.vcf usr/share/htslib-test/test/vcf_meta_meta.vcf usr/share/htslib-test/test/with-shlib.sh usr/share/htslib-test/test/xx#MD.sam usr/share/htslib-test/test/xx#MD2.sam usr/share/htslib-test/test/xx#blank.sam usr/share/htslib-test/test/xx#large_aux.sam usr/share/htslib-test/test/xx#large_aux2.sam usr/share/htslib-test/test/xx#large_aux_java.cram usr/share/htslib-test/test/xx#minimal.sam usr/share/htslib-test/test/xx#pair.sam usr/share/htslib-test/test/xx#repeated.sam usr/share/htslib-test/test/xx#rg.sam usr/share/htslib-test/test/xx#tlen.sam usr/share/htslib-test/test/xx#tlen2.sam usr/share/htslib-test/test/xx#triplet.sam usr/share/htslib-test/test/xx#u.sam usr/share/htslib-test/test/xx#unsorted.sam usr/share/htslib-test/test/xx.fa usr/share/htslib-test/test/xx.fa.fai usr/share/htslib-test/textutils.c usr/share/htslib-test/textutils_internal.h usr/share/htslib-test/thread_pool.c usr/share/htslib-test/thread_pool_internal.h usr/share/htslib-test/vcf.c usr/share/htslib-test/vcf_sweep.c usr/share/htslib-test/vcfutils.c usr/share/htslib-test/version.sh usr/share/lintian usr/share/lintian/overrides usr/share/lintian/overrides/htslib-test usr/share/htslib-test/htscodecs.mk