metaphlan (4.0.4+ds-1)

Details

Core information at a glance

Distribution
kali
Origin
kali-last-snapshot
Repository
https://http.kali.org/kali
Codename
kali-last-snapshot
Component
main
Source
none
Architecture
i386
Section
science
Priority
optional
Maintainer
Debian Med Packaging Team <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size
6.2 kB
Size expected
2 MB
Size actual
2 MB
Size match

Dependencies

Required package dependencies

  • python3-biom-format
  • python3-biopython
  • python3-dendropy
  • python3-h5py
  • python3-numpy
  • python3-pandas
  • python3-pysam
  • python3-requests
  • python3-scipy
  • python3:any
  • metaphlan2-data
  • python3-msgpack
  • python3-packaging
  • r-base-core
  • bowtie2

Suggested packages

Recommended additional packages

  • None

Description

Metagenomic Phylogenetic Analysis

Homepage Download .deb

Tags

Package classification tags

None

Checksums

Hash values and integrity verification status

TypeActualMatch
MD51c817cb3…90e94157
SHA-11fb4c4e1…526a68b0
SHA-256baa6094b…bacbac9b
SHA-512e2546c1d…764881ec

Contents

Files and directories included

.
usr
usr/bin
usr/bin/add_metadata_tree.py
usr/bin/extract_markers.py
usr/bin/merge_metaphlan_tables.py
usr/bin/metaphlan
usr/bin/metaphlan2krona.py
usr/bin/plot_tree_graphlan.py
usr/bin/read_fastx.py
usr/bin/run_treeshrink.py
usr/bin/sample2markers.py
usr/bin/sgb_to_gtdb_profile.py
usr/bin/strain_transmission.py
usr/bin/strainphlan
usr/bin/treeshrink.py
usr/lib
usr/lib/python3
usr/lib/python3/dist-packages
usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info
usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/PKG-INFO
usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/dependency_links.txt
usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/entry_points.txt
usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/requires.txt
usr/lib/python3/dist-packages/MetaPhlAn-4.0.4.egg-info/top_level.txt
usr/lib/python3/dist-packages/metaphlan
usr/lib/python3/dist-packages/metaphlan/__init__.py
usr/lib/python3/dist-packages/metaphlan/metaphlan.py
usr/lib/python3/dist-packages/metaphlan/metaphlan_databases
usr/lib/python3/dist-packages/metaphlan/metaphlan_databases/README.txt
usr/lib/python3/dist-packages/metaphlan/strainphlan.py
usr/lib/python3/dist-packages/metaphlan/utils
usr/lib/python3/dist-packages/metaphlan/utils/VallesColomerM_2022_Jan21_thresholds.tsv
usr/lib/python3/dist-packages/metaphlan/utils/VallesColomerM_2022_Nov19_thresholds.tsv
usr/lib/python3/dist-packages/metaphlan/utils/__init__.py
usr/lib/python3/dist-packages/metaphlan/utils/add_metadata_tree.py
usr/lib/python3/dist-packages/metaphlan/utils/calculate_diversity.R
usr/lib/python3/dist-packages/metaphlan/utils/consensus_markers.py
usr/lib/python3/dist-packages/metaphlan/utils/database_controller.py
usr/lib/python3/dist-packages/metaphlan/utils/external_exec.py
usr/lib/python3/dist-packages/metaphlan/utils/extract_markers.py
usr/lib/python3/dist-packages/metaphlan/utils/merge_metaphlan_tables.py
usr/lib/python3/dist-packages/metaphlan/utils/metaphlan2krona.py
usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103.nwk
usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_SGB2GTDB.tsv
usr/lib/python3/dist-packages/metaphlan/utils/mpa_vJan21_CHOCOPhlAnSGB_202103_size.txt.bz2
usr/lib/python3/dist-packages/metaphlan/utils/parallelisation.py
usr/lib/python3/dist-packages/metaphlan/utils/phylophlan_controller.py
usr/lib/python3/dist-packages/metaphlan/utils/plot_bug.py
usr/lib/python3/dist-packages/metaphlan/utils/plot_tree_graphlan.py
usr/lib/python3/dist-packages/metaphlan/utils/pyphlan.py
usr/lib/python3/dist-packages/metaphlan/utils/read_fastx.py
usr/lib/python3/dist-packages/metaphlan/utils/sample2markers.py
usr/lib/python3/dist-packages/metaphlan/utils/sgb_to_gtdb_profile.py
usr/lib/python3/dist-packages/metaphlan/utils/strain_transmission.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/Rfunctions.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_d.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_IQR.log.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_adjIQR.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_outliers_bootliers.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_IQR.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_hnorm.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_kernel.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_lkernel.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_lnorm.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/find_threshold_loglnorm.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_allgenes.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_pergene.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_perspecies.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/R_scripts/plot_threshold.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/CITATION
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/DESCRIPTION
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/INDEX
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/Rd.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/data.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/demo.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/features.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/hsearch.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/links.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/nsInfo.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/package.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/Meta/vignette.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/NAMESPACE
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdb
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/R/BMS.rdx
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/data/datafls.rda
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/demo/BMS.growth.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bmasmall.bib
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.R
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.Rnw
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/bms.pdf
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/doc/index.html
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/AnIndex
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdb
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/BMS.rdx
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/aliases.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/help/paths.rds
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html/00Index.html
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/Rlib/BMS/html/R.css
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/run_treeshrink.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/Tree_extend.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/__init__.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/alignment.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/decompose_lib.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/filemgr.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/filter_lib.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/optimal_filter_lib.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/sequence_lib.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/tree_lib.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/scripts/util_lib.py
usr/lib/python3/dist-packages/metaphlan/utils/treeshrink/treeshrink.py
usr/lib/python3/dist-packages/metaphlan/utils/util_fun.py
usr/share
usr/share/doc
usr/share/doc/metaphlan
usr/share/doc/metaphlan/README.html
usr/share/doc/metaphlan/changelog.Debian.gz
usr/share/doc/metaphlan/changelog.gz
usr/share/doc/metaphlan/copyright
usr/share/doc/metaphlan/images
usr/share/doc/metaphlan/images/1574126761-RAxML_bestTree.s__Bacteroides_caccae.tree.metadata.png
usr/share/doc/metaphlan/images/1771497600-snp_distance.png
usr/share/doc/metaphlan/images/476974413-tree_alignment.png
usr/share/doc/metaphlan/images/get-pngs
usr/share/lintian
usr/share/lintian/overrides
usr/share/lintian/overrides/metaphlan
usr/share/man
usr/share/man/man1
usr/share/man/man1/metaphlan.1.gz
usr/share/man/man1/strainphlan.1.gz