phast (1.8+dfsg-1)
Details
Core information at a glance
- Distribution
- kali
- Origin
- kali-last-snapshot
- Repository
- https://http.kali.org/kali
- Codename
- kali-last-snapshot
- Component
- main
- Source
- none
- Architecture
- i386
- Section
- science
- Priority
- optional
- Maintainer
- Debian Med Packaging Team <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 32.4 kB
- Size expected
- 3.6 MB
- Size actual
- 3.6 MB
- Size match
Dependencies
Required package dependencies
Suggested packages
Recommended additional packages
- None
Description
phylogenetic analysis with space/time models
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 58a1464b…ba144398 | |
| SHA-1 | 6dc82561…e2b6200e | |
| SHA-256 | 2e77adf3…624a7e9d | |
| SHA-512 | d6bb1fe6…47286abc |
Contents
Files and directories included
. usr usr/bin usr/bin/all_dists usr/bin/base_evolve usr/bin/chooseLines usr/bin/clean_genes usr/bin/consEntropy usr/bin/convert_coords usr/bin/display_rate_matrix usr/bin/dless usr/bin/dlessP usr/bin/draw_tree usr/bin/eval_predictions usr/bin/exoniphy usr/bin/hmm_train usr/bin/hmm_tweak usr/bin/hmm_view usr/bin/indelFit usr/bin/indelHistory usr/bin/maf_parse usr/bin/makeHKY usr/bin/modFreqs usr/bin/msa_diff usr/bin/msa_split usr/bin/msa_view usr/bin/pbsDecode usr/bin/pbsEncode usr/bin/pbsScoreMatrix usr/bin/pbsTrain usr/bin/phast usr/bin/phastBias usr/bin/phastCons usr/bin/phastMotif usr/bin/phastOdds usr/bin/phyloBoot usr/bin/phyloFit usr/bin/phyloP usr/bin/prequel usr/bin/refeature usr/bin/stringiphy usr/bin/treeGen usr/bin/tree_doctor usr/share usr/share/doc usr/share/doc/phast usr/share/doc/phast/changelog.Debian.gz usr/share/doc/phast/copyright usr/share/doc/phast/examples usr/share/doc/phast/examples/Makefile.xz usr/share/doc/phast/examples/chr22.14500000-15500000.fa.xz usr/share/doc/phast/examples/chr22.14500000-15500000.gp.xz usr/share/doc/phast/examples/chr22.14500000-15500000.maf.xz usr/share/doc/phast/examples/chr22_correct.oss.gz.xz usr/share/doc/phast/examples/cons-4way_correct.dat.xz usr/share/doc/phast/examples/cons-hmr_correct.dat.xz usr/share/doc/phast/examples/cons_correct.dat.xz usr/share/doc/phast/examples/elemcfa.bed usr/share/doc/phast/examples/elements-4way_correct.bed usr/share/doc/phast/examples/elements_correct.bed usr/share/doc/phast/examples/f81.mod usr/share/doc/phast/examples/hky-dg.mod usr/share/doc/phast/examples/hky-em.mod usr/share/doc/phast/examples/hky.mod usr/share/doc/phast/examples/hmrc.ss.xz usr/share/doc/phast/examples/hmrc_correct.fa.xz usr/share/doc/phast/examples/hmrc_summary_correct usr/share/doc/phast/examples/hpmrc-rev-dg-global.mod usr/share/doc/phast/examples/hpmrc.fa.xz usr/share/doc/phast/examples/hpmrc.ss.xz usr/share/doc/phast/examples/jc.mod usr/share/doc/phast/examples/rev-dg.mod usr/share/doc/phast/examples/rev-em.mod usr/share/doc/phast/examples/rev-gaps.mod usr/share/doc/phast/examples/rev-hm.mod usr/share/doc/phast/examples/rev-hmc-lnl.mod usr/share/doc/phast/examples/rev-hmc.postprob.xz usr/share/doc/phast/examples/rev-hmr.mod usr/share/doc/phast/examples/rev-hmr2.mod usr/share/doc/phast/examples/rev-lnl.mod usr/share/doc/phast/examples/rev.mod usr/share/doc/phast/examples/rev.postprob.xz usr/share/doc/phast/examples/testPhast.pl.xz usr/share/doc/phast/examples/test_phast.sh.xz usr/share/doc/phast/examples/unrest-cow-anc.mod usr/share/doc/phast/examples/unrest.mod usr/share/man usr/share/man/man1 usr/share/man/man1/all_dists.1.gz usr/share/man/man1/base_evolve.1.gz usr/share/man/man1/chooseLines.1.gz usr/share/man/man1/clean_genes.1.gz usr/share/man/man1/consEntropy.1.gz usr/share/man/man1/convert_coords.1.gz usr/share/man/man1/display_rate_matrix.1.gz usr/share/man/man1/dless.1.gz usr/share/man/man1/dlessP.1.gz usr/share/man/man1/draw_tree.1.gz usr/share/man/man1/eval_predictions.1.gz usr/share/man/man1/exoniphy.1.gz usr/share/man/man1/hmm_train.1.gz usr/share/man/man1/hmm_tweak.1.gz usr/share/man/man1/hmm_view.1.gz usr/share/man/man1/indelFit.1.gz usr/share/man/man1/indelHistory.1.gz usr/share/man/man1/maf_parse.1.gz usr/share/man/man1/makeHKY.1.gz usr/share/man/man1/modFreqs.1.gz usr/share/man/man1/msa_diff.1.gz usr/share/man/man1/msa_split.1.gz usr/share/man/man1/msa_view.1.gz usr/share/man/man1/pbsDecode.1.gz usr/share/man/man1/pbsEncode.1.gz usr/share/man/man1/pbsScoreMatrix.1.gz usr/share/man/man1/pbsTrain.1.gz usr/share/man/man1/phast.1.gz usr/share/man/man1/phastBias.1.gz usr/share/man/man1/phastCons.1.gz usr/share/man/man1/phastMotif.1.gz usr/share/man/man1/phastOdds.1.gz usr/share/man/man1/phyloBoot.1.gz usr/share/man/man1/phyloFit.1.gz usr/share/man/man1/phyloP.1.gz usr/share/man/man1/prequel.1.gz usr/share/man/man1/refeature.1.gz usr/share/man/man1/stringiphy.1.gz usr/share/man/man1/treeGen.1.gz usr/share/man/man1/tree_doctor.1.gz usr/share/phast usr/share/phast/data usr/share/phast/data/exoniphy usr/share/phast/data/exoniphy/default-no-cns.cm usr/share/phast/data/exoniphy/default.cm usr/share/phast/data/exoniphy/mammals usr/share/phast/data/exoniphy/mammals/cftr25_hybrid.nh usr/share/phast/data/exoniphy/mammals/default-indels-no-cns.hmm usr/share/phast/data/exoniphy/mammals/default-indels.hmm usr/share/phast/data/exoniphy/mammals/default-no-cns.hmm usr/share/phast/data/exoniphy/mammals/default.hmm usr/share/phast/data/exoniphy/mammals/hky.3'splice-1.mod usr/share/phast/data/exoniphy/mammals/hky.3'splice-2.mod usr/share/phast/data/exoniphy/mammals/hky.3'splice-3.mod usr/share/phast/data/exoniphy/mammals/hky.3'splice-4.mod usr/share/phast/data/exoniphy/mammals/hky.3'splice-5.mod usr/share/phast/data/exoniphy/mammals/hky.3'splice-6.mod usr/share/phast/data/exoniphy/mammals/hky.5'splice-1.mod usr/share/phast/data/exoniphy/mammals/hky.5'splice-2.mod usr/share/phast/data/exoniphy/mammals/hky.5'splice-3.mod usr/share/phast/data/exoniphy/mammals/hky.5'splice-4.mod usr/share/phast/data/exoniphy/mammals/hky.5'splice-5.mod usr/share/phast/data/exoniphy/mammals/hky.5'splice-6.mod usr/share/phast/data/exoniphy/mammals/hky.cds3'ss.mod usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-1.mod usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-2.mod usr/share/phast/data/exoniphy/mammals/hky.cds5'ss-3.mod usr/share/phast/data/exoniphy/mammals/hky.prestart-1.mod usr/share/phast/data/exoniphy/mammals/hky.prestart-2.mod usr/share/phast/data/exoniphy/mammals/hky.prestart-3.mod usr/share/phast/data/exoniphy/mammals/hky.prestart-4.mod usr/share/phast/data/exoniphy/mammals/hky.start-1.mod usr/share/phast/data/exoniphy/mammals/hky.start-2.mod usr/share/phast/data/exoniphy/mammals/hky.start-3.mod usr/share/phast/data/exoniphy/mammals/hky.stop-1.mod usr/share/phast/data/exoniphy/mammals/hky.stop-2.mod usr/share/phast/data/exoniphy/mammals/hky.stop-3.mod usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc1.mod usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc2.mod usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc3.mod usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc4.mod usr/share/phast/data/exoniphy/mammals/r3.cds-1.gc5.mod usr/share/phast/data/exoniphy/mammals/r3.cds-1.mod usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc1.mod usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc2.mod usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc3.mod usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc4.mod usr/share/phast/data/exoniphy/mammals/r3.cds-2.gc5.mod usr/share/phast/data/exoniphy/mammals/r3.cds-2.mod usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc1.mod usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc2.mod usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc3.mod usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc4.mod usr/share/phast/data/exoniphy/mammals/r3.cds-3.gc5.mod usr/share/phast/data/exoniphy/mammals/r3.cds-3.mod usr/share/phast/data/exoniphy/mammals/r3.cns.gc1.mod usr/share/phast/data/exoniphy/mammals/r3.cns.gc2.mod usr/share/phast/data/exoniphy/mammals/r3.cns.gc3.mod usr/share/phast/data/exoniphy/mammals/r3.cns.gc4.mod usr/share/phast/data/exoniphy/mammals/r3.cns.gc5.mod usr/share/phast/data/exoniphy/mammals/r3.cns.mod usr/share/phast/data/exoniphy/mammals/r3.ncns.gc1.mod usr/share/phast/data/exoniphy/mammals/r3.ncns.gc2.mod usr/share/phast/data/exoniphy/mammals/r3.ncns.gc3.mod usr/share/phast/data/exoniphy/mammals/r3.ncns.gc4.mod usr/share/phast/data/exoniphy/mammals/r3.ncns.gc5.mod usr/share/phast/data/exoniphy/mammals/r3.ncns.mod usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc1.mod usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc2.mod usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc3.mod usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc4.mod usr/share/phast/data/exoniphy/mammals/r3.noncoding.gc5.mod usr/share/phast/data/exoniphy/mammals/r3.noncoding.mod usr/share/phast/data/exoniphy/models usr/share/phast/data/exoniphy/models-gc1 usr/share/phast/data/exoniphy/models-gc2 usr/share/phast/data/exoniphy/models-gc3 usr/share/phast/data/exoniphy/models-gc4 usr/share/phast/data/exoniphy/models-gc5 usr/share/phast/data/exoniphy/models-no-cns usr/share/phast/data/exoniphy/models-no-cns-gc1 usr/share/phast/data/exoniphy/models-no-cns-gc2 usr/share/phast/data/exoniphy/models-no-cns-gc3 usr/share/phast/data/exoniphy/models-no-cns-gc4 usr/share/phast/data/exoniphy/models-no-cns-gc5 usr/share/phast/data/phastCons usr/share/phast/data/phastCons/simple-coding-indels.hmm usr/share/phast/data/phastCons/simple-coding.hmm