bbmap (39.20+dfsg-3)

Details

Core information at a glance

Distribution: ubuntu
Origin: ubuntu-resolute
Repository: https://nl.archive.ubuntu.com/ubuntu
Codename: resolute
Component: universe
Source: bbmap
Architecture: amd64
Section: universe/science
Priority: optional
Maintainer: Ubuntu Developers <[email protected]>

Size & integrity

Byte sizes and integrity verification

Installed size: 11.7 MB
Size expected: 10.6 MB
Size actual: 10.6 MB
Size match: match

Dependencies

Required package dependencies

Recommends

Recommended package dependencies

pigz

Suggested packages

Recommended additional packages

None

Provides

Virtual packages provided

bbtools

Description

BBTools genomic aligner and other tools for short sequences

Homepage Download .deb

Checksums

Hash values and integrity verification status

Type	Expected	Actual	Match
MD5	Not provided	b3747fe1…e2e53bf2	not available
SHA-1	Not provided	a4a97a96…53740ab0	not available
SHA-256	Not provided	3e0f5953…c9061b68	not available
SHA-512	e0b37d6e…59ddfbfb	e0b37d6e…59ddfbfb	match

Files and directories included

.
usr
usr/bin
usr/share
usr/share/bbmap
usr/share/bbmap/Xcalcmem.sh
usr/share/bbmap/a_sample_mt.sh
usr/share/bbmap/addadapters.sh
usr/share/bbmap/addssu.sh
usr/share/bbmap/adjusthomopolymers.sh
usr/share/bbmap/alltoall.sh
usr/share/bbmap/analyzeaccession.sh
usr/share/bbmap/analyzegenes.sh
usr/share/bbmap/analyzesketchresults.sh
usr/share/bbmap/applyvariants.sh
usr/share/bbmap/bbcms.sh
usr/share/bbmap/bbcountunique.sh
usr/share/bbmap/bbcrisprfinder.sh
usr/share/bbmap/bbduk.sh
usr/share/bbmap/bbest.sh
usr/share/bbmap/bbfakereads.sh
usr/share/bbmap/bbmap.sh
usr/share/bbmap/bbmapskimmer.sh
usr/share/bbmap/bbmask.sh
usr/share/bbmap/bbmerge-auto.sh
usr/share/bbmap/bbmerge.sh
usr/share/bbmap/bbnorm.sh
usr/share/bbmap/bbrealign.sh
usr/share/bbmap/bbrename.sh
usr/share/bbmap/bbsketch.sh
usr/share/bbmap/bbsort.sh
usr/share/bbmap/bbsplit.sh
usr/share/bbmap/bbsplitpairs.sh
usr/share/bbmap/bbstats.sh
usr/share/bbmap/bbversion.sh
usr/share/bbmap/bbwrap.sh
usr/share/bbmap/bloomfilter.sh
usr/share/bbmap/bloomfilterparser.sh
usr/share/bbmap/calcmem.sh
usr/share/bbmap/calctruequality.sh
usr/share/bbmap/callgenes.sh
usr/share/bbmap/callpeaks.sh
usr/share/bbmap/callvariants.sh
usr/share/bbmap/callvariants2.sh
usr/share/bbmap/cat.sh
usr/share/bbmap/cg2illumina.sh
usr/share/bbmap/checkstrand.sh
usr/share/bbmap/clumpify.sh
usr/share/bbmap/commonkmers.sh
usr/share/bbmap/comparegff.sh
usr/share/bbmap/comparelabels.sh
usr/share/bbmap/comparesketch.sh
usr/share/bbmap/comparessu.sh
usr/share/bbmap/comparevcf.sh
usr/share/bbmap/consect.sh
usr/share/bbmap/consensus.sh
usr/share/bbmap/copyfile.sh
usr/share/bbmap/countbarcodes.sh
usr/share/bbmap/countbarcodes2.sh
usr/share/bbmap/countduplicates.sh
usr/share/bbmap/countgc.sh
usr/share/bbmap/countsharedlines.sh
usr/share/bbmap/crossblock.sh
usr/share/bbmap/crosscontaminate.sh
usr/share/bbmap/cutgff.sh
usr/share/bbmap/cutprimers.sh
usr/share/bbmap/decontaminate.sh
usr/share/bbmap/dedupe.sh
usr/share/bbmap/dedupe2.sh
usr/share/bbmap/dedupebymapping.sh
usr/share/bbmap/demuxbyname.sh
usr/share/bbmap/demuxserver.sh
usr/share/bbmap/diskbench.sh
usr/share/bbmap/estherfilter.sh
usr/share/bbmap/explodetree.sh
usr/share/bbmap/fetchproks.sh
usr/share/bbmap/filterassemblysummary.sh
usr/share/bbmap/filterbarcodes.sh
usr/share/bbmap/filterbycoverage.sh
usr/share/bbmap/filterbyname.sh
usr/share/bbmap/filterbysequence.sh
usr/share/bbmap/filterbytaxa.sh
usr/share/bbmap/filterbytile.sh
usr/share/bbmap/filterlines.sh
usr/share/bbmap/filterqc.sh
usr/share/bbmap/filtersam.sh
usr/share/bbmap/filtersilva.sh
usr/share/bbmap/filtersubs.sh
usr/share/bbmap/filtervcf.sh
usr/share/bbmap/findrepeats.sh
usr/share/bbmap/fixgaps.sh
usr/share/bbmap/fungalrelease.sh
usr/share/bbmap/fuse.sh
usr/share/bbmap/gbff2gff.sh
usr/share/bbmap/getreads.sh
usr/share/bbmap/gi2ancestors.sh
usr/share/bbmap/gi2taxid.sh
usr/share/bbmap/gitable.sh
usr/share/bbmap/gradebins.sh
usr/share/bbmap/grademerge.sh
usr/share/bbmap/gradesam.sh
usr/share/bbmap/icecreamfinder.sh
usr/share/bbmap/icecreamgrader.sh
usr/share/bbmap/icecreammaker.sh
usr/share/bbmap/idmatrix.sh
usr/share/bbmap/idtree.sh
usr/share/bbmap/invertkey.sh
usr/share/bbmap/kapastats.sh
usr/share/bbmap/kcompress.sh
usr/share/bbmap/keepbestcopy.sh
usr/share/bbmap/khist.sh
usr/share/bbmap/kmercountexact.sh
usr/share/bbmap/kmercountmulti.sh
usr/share/bbmap/kmercoverage.sh
usr/share/bbmap/kmerfilterset.sh
usr/share/bbmap/kmerlimit.sh
usr/share/bbmap/kmerlimit2.sh
usr/share/bbmap/kmerposition.sh
usr/share/bbmap/kmutate.sh
usr/share/bbmap/lilypad.sh
usr/share/bbmap/loadreads.sh
usr/share/bbmap/loglog.sh
usr/share/bbmap/makechimeras.sh
usr/share/bbmap/makecontaminatedgenomes.sh
usr/share/bbmap/makepolymers.sh
usr/share/bbmap/makequickbinvector.sh
usr/share/bbmap/mapPacBio.sh
usr/share/bbmap/matrixtocolumns.sh
usr/share/bbmap/mergeOTUs.sh
usr/share/bbmap/mergebarcodes.sh
usr/share/bbmap/mergepgm.sh
usr/share/bbmap/mergeribo.sh
usr/share/bbmap/mergesam.sh
usr/share/bbmap/mergesketch.sh
usr/share/bbmap/mergesorted.sh
usr/share/bbmap/microalign.sh
usr/share/bbmap/msa.sh
usr/share/bbmap/mutate.sh
usr/share/bbmap/muxbyname.sh
usr/share/bbmap/netfilter.sh
usr/share/bbmap/novademux.sh
usr/share/bbmap/partition.sh
usr/share/bbmap/phylip2fasta.sh
usr/share/bbmap/picksubset.sh
usr/share/bbmap/pileup.sh
usr/share/bbmap/pileup2.sh
usr/share/bbmap/plotflowcell.sh
usr/share/bbmap/plotgc.sh
usr/share/bbmap/plothist.sh
usr/share/bbmap/plotreadposition.sh
usr/share/bbmap/polyfilter.sh
usr/share/bbmap/postfilter.sh
usr/share/bbmap/printtime.sh
usr/share/bbmap/processfrag.sh
usr/share/bbmap/processhi-c.sh
usr/share/bbmap/processspeed.sh
usr/share/bbmap/quickbin.sh
usr/share/bbmap/randomgenome.sh
usr/share/bbmap/randomreads.sh
usr/share/bbmap/randomreadsmg.sh
usr/share/bbmap/readlength.sh
usr/share/bbmap/readqc.sh
usr/share/bbmap/reducecolumns.sh
usr/share/bbmap/reducesilva.sh
usr/share/bbmap/reformat.sh
usr/share/bbmap/reformatpb.sh
usr/share/bbmap/removebadbarcodes.sh
usr/share/bbmap/removecatdogmousehuman.sh
usr/share/bbmap/removehuman.sh
usr/share/bbmap/removehuman2.sh
usr/share/bbmap/removemicrobes.sh
usr/share/bbmap/removesmartbell.sh
usr/share/bbmap/rename.sh
usr/share/bbmap/renamebymapping.sh
usr/share/bbmap/renamebysketch.sh
usr/share/bbmap/renameimg.sh
usr/share/bbmap/repair.sh
usr/share/bbmap/replaceheaders.sh
usr/share/bbmap/representative.sh
usr/share/bbmap/rqcfilter.sh
usr/share/bbmap/rqcfilter2.sh
usr/share/bbmap/runhmm.sh
usr/share/bbmap/samtoroc.sh
usr/share/bbmap/scoresequence.sh
usr/share/bbmap/seal.sh
usr/share/bbmap/sendsketch.sh
usr/share/bbmap/seqtovec.sh
usr/share/bbmap/shred.sh
usr/share/bbmap/shrinkaccession.sh
usr/share/bbmap/shuffle.sh
usr/share/bbmap/shuffle2.sh
usr/share/bbmap/sketch.sh
usr/share/bbmap/sketchblacklist.sh
usr/share/bbmap/sketchblacklist2.sh
usr/share/bbmap/sortbyname.sh
usr/share/bbmap/splitbytaxa.sh
usr/share/bbmap/splitnextera.sh
usr/share/bbmap/splitribo.sh
usr/share/bbmap/splitsam.sh
usr/share/bbmap/splitsam4way.sh
usr/share/bbmap/splitsam6way.sh
usr/share/bbmap/stats.sh
usr/share/bbmap/stats3.sh
usr/share/bbmap/statswrapper.sh
usr/share/bbmap/streamsam.sh
usr/share/bbmap/subsketch.sh
usr/share/bbmap/summarizecontam.sh
usr/share/bbmap/summarizecoverage.sh
usr/share/bbmap/summarizecrossblock.sh
usr/share/bbmap/summarizemerge.sh
usr/share/bbmap/summarizequast.sh
usr/share/bbmap/summarizescafstats.sh
usr/share/bbmap/summarizeseal.sh
usr/share/bbmap/summarizesketch.sh
usr/share/bbmap/synthmda.sh
usr/share/bbmap/tadpipe.sh
usr/share/bbmap/tadpole.sh
usr/share/bbmap/tadwrapper.sh
usr/share/bbmap/tagandmerge.sh
usr/share/bbmap/taxonomy.sh
usr/share/bbmap/taxserver.sh
usr/share/bbmap/taxsize.sh
usr/share/bbmap/taxtree.sh
usr/share/bbmap/testfilesystem.sh
usr/share/bbmap/testformat.sh
usr/share/bbmap/testformat2.sh
usr/share/bbmap/tetramerfreq.sh
usr/share/bbmap/textfile.sh
usr/share/bbmap/tiledump.sh
usr/share/bbmap/train.sh
usr/share/bbmap/translate6frames.sh
usr/share/bbmap/trimcontigs.sh
usr/share/bbmap/unicode2ascii.sh
usr/share/bbmap/unzip.sh
usr/share/bbmap/vcf2gff.sh
usr/share/bbmap/webcheck.sh
usr/share/doc
usr/share/doc/bbmap
usr/share/doc/bbmap/README.Debian
usr/share/doc/bbmap/RestartingServers.txt
usr/share/doc/bbmap/TableOfContents.txt.gz
usr/share/doc/bbmap/ToolDescriptions.txt.gz
usr/share/doc/bbmap/UsageGuide.txt.gz
usr/share/doc/bbmap/bbcms.txt.gz
usr/share/doc/bbmap/changelog.Debian.gz
usr/share/doc/bbmap/citation.txt
usr/share/doc/bbmap/copyright
usr/share/doc/bbmap/guides
usr/share/doc/bbmap/guides/A_SampleGuide.txt
usr/share/doc/bbmap/guides/AddAdaptersGuide.txt
usr/share/doc/bbmap/guides/BBDukGuide.txt.gz
usr/share/doc/bbmap/guides/BBMapGuide.txt.gz
usr/share/doc/bbmap/guides/BBMap_old_readme.txt.gz
usr/share/doc/bbmap/guides/BBMaskGuide.txt
usr/share/doc/bbmap/guides/BBMergeGuide.txt.gz
usr/share/doc/bbmap/guides/BBNormGuide.txt.gz
usr/share/doc/bbmap/guides/BBSketchGuide.txt.gz
usr/share/doc/bbmap/guides/CalcUniquenessGuide.txt
usr/share/doc/bbmap/guides/CallVariantsGuide.txt.gz
usr/share/doc/bbmap/guides/ClumpifyGuide.txt
usr/share/doc/bbmap/guides/DedupeGuide.txt.gz
usr/share/doc/bbmap/guides/FilterByTileGuide.txt.gz
usr/share/doc/bbmap/guides/PreprocessingGuide.txt
usr/share/doc/bbmap/guides/ReformatGuide.txt.gz
usr/share/doc/bbmap/guides/RepairGuide.txt
usr/share/doc/bbmap/guides/SealGuide.txt.gz
usr/share/doc/bbmap/guides/SplitNexteraGuide.txt
usr/share/doc/bbmap/guides/StatsGuide.txt
usr/share/doc/bbmap/guides/TadpoleGuide.txt.gz
usr/share/doc/bbmap/guides/TaxonomyGuide.txt.gz
usr/share/doc/bbmap/readme.txt
usr/share/doc/bbmap/readme_config.txt
usr/share/doc/bbmap/readme_filetypes.txt
usr/share/java
usr/share/java/bbmap.jar
usr/share/lintian
usr/share/lintian/overrides
usr/share/lintian/overrides/bbmap
usr/share/man
usr/share/man/man1
usr/share/man/man1/bbduk.sh.1.gz
usr/share/man/man1/bbmap.sh.1.gz
usr/share/man/man1/bbnorm.sh.1.gz
usr/share/man/man1/bloomfilter.sh.1.gz
usr/share/man/man1/dedupe.sh.1.gz
usr/share/man/man1/reformat.sh.1.gz
usr/bin/bbduk.sh
usr/bin/bbmap.sh
usr/bin/bbnorm.sh
usr/bin/bloomfilter.sh
usr/bin/dedupe.sh
usr/bin/reformat.sh