freebayes (1.3.9-2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- freebayes
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 3.1 MB
- Size expected
- 1.5 MB
- Size actual
- 1.5 MB
- Size match
- match
Dependencies
Required package dependencies
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.3.1)
- libseqlib2 (>= 1.2.0)
- libstdc++6 (>= 13.1)
- libtabixpp0t64 (>= 1.0.0)
- libvcflib2 (>= 1.0.12+dfsg)
- zlib1g (>= 1:1.1.4)
- python3
Recommends
Recommended package dependencies
Suggested packages
Recommended additional packages
- None
Provides
Virtual packages provided
- None
Description
Bayesian haplotype-based polymorphism discovery and genotyping
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 19d964b0…adabe8df | not available |
| SHA-1 | 8d5536ce…771508f3 | not available |
| SHA-256 | d744364b…469457e1 | not available |
| SHA-512 | 20fb279d…84c45274 | match |
Contents
Files and directories included
. usr usr/bin usr/bin/bamleftalign usr/bin/freebayes usr/share usr/share/doc usr/share/doc/freebayes usr/share/doc/freebayes/README.md.gz usr/share/doc/freebayes/README.test usr/share/doc/freebayes/README.test_data usr/share/doc/freebayes/RELEASE-NOTES.md.gz usr/share/doc/freebayes/changelog.Debian.gz usr/share/doc/freebayes/copyright usr/share/doc/freebayes/examples usr/share/doc/freebayes/examples/README.test_data usr/share/doc/freebayes/examples/data usr/share/doc/freebayes/examples/data/targets.bed usr/share/doc/freebayes/examples/data/test.alt usr/share/doc/freebayes/examples/data/test.bam usr/share/doc/freebayes/examples/data/test.bam.bai usr/share/doc/freebayes/examples/data/test.bed usr/share/doc/freebayes/examples/data/test.ref usr/share/doc/freebayes/examples/data/test.ref.fai usr/share/doc/freebayes/examples/data/test.vcf usr/share/doc/freebayes/examples/freebayes-env.yaml usr/share/doc/freebayes/examples/performance usr/share/doc/freebayes/examples/performance/benchmark.md usr/share/doc/freebayes/examples/pipeline.sh usr/share/doc/freebayes/examples/regression usr/share/doc/freebayes/examples/regression/NA12878.chr22.tiny.vcf usr/share/doc/freebayes/examples/regression/README.md usr/share/doc/freebayes/examples/runner.sh usr/share/doc/freebayes/examples/snakemake-freebayes-parallel.smk usr/share/doc/freebayes/examples/splice usr/share/doc/freebayes/examples/splice/1:883884-887618.bam usr/share/doc/freebayes/examples/splice/1:883884-887618.bam.bai usr/share/doc/freebayes/examples/splice/1:883884-887618.fa usr/share/doc/freebayes/examples/splice/1:883884-887618.fa.fai usr/share/doc/freebayes/examples/t usr/share/doc/freebayes/examples/t/00_region_and_target_handling.t usr/share/doc/freebayes/examples/t/01_call_variants.t usr/share/doc/freebayes/examples/t/01b_call_variants.t usr/share/doc/freebayes/examples/t/02_multi_bam.t usr/share/doc/freebayes/examples/t/03_reference_bases.t usr/share/doc/freebayes/examples/targets.bed usr/share/doc/freebayes/examples/test.alt usr/share/doc/freebayes/examples/test.bam usr/share/doc/freebayes/examples/test.bam.bai usr/share/doc/freebayes/examples/test.bed usr/share/doc/freebayes/examples/test.ref usr/share/doc/freebayes/examples/test.ref.fai usr/share/doc/freebayes/examples/test.vcf usr/share/doc/freebayes/examples/tiny usr/share/doc/freebayes/examples/tiny/1read.bam usr/share/doc/freebayes/examples/tiny/1read.bam.bai usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.bam.bai usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.cram usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.giab.vcf usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam usr/share/doc/freebayes/examples/tiny/NA12878.chr22.tiny.hla.bam.bai usr/share/doc/freebayes/examples/tiny/hla.fa usr/share/doc/freebayes/examples/tiny/hla.fa.fai usr/share/doc/freebayes/examples/tiny/hla.vcf.gz usr/share/doc/freebayes/examples/tiny/hla.vcf.gz.tbi usr/share/doc/freebayes/examples/tiny/q with spaces.fa usr/share/doc/freebayes/examples/tiny/q with spaces.fa.fai usr/share/doc/freebayes/examples/tiny/q with spaces.regions usr/share/doc/freebayes/examples/tiny/q.fa usr/share/doc/freebayes/examples/tiny/q.fa.fai usr/share/doc/freebayes/examples/tiny/q.regions usr/share/doc/freebayes/examples/tiny/q.vcf.gz usr/share/doc/freebayes/examples/tiny/q.vcf.gz.tbi usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz usr/share/doc/freebayes/examples/tiny/q_spiked.vcf.gz.tbi usr/share/doc/freebayes/run-unit-test.gz usr/share/freebayes usr/share/freebayes/scripts usr/share/freebayes/scripts/GenerateFreebayesRegions.R usr/share/freebayes/scripts/bgziptabix usr/share/freebayes/scripts/coverage_to_regions.py usr/share/freebayes/scripts/fasta_generate_regions.py usr/share/freebayes/scripts/freebayes-parallel usr/share/freebayes/scripts/generate_freebayes_region_scripts.sh usr/share/freebayes/scripts/sam_add_rg.pl usr/share/freebayes/scripts/samples.cnv usr/share/freebayes/scripts/split_ref_by_bai_datasize.py usr/share/freebayes/scripts/update_version.sh usr/share/freebayes/scripts/vcffirstheader