r-bioc-phyloseq (1.50.0+dfsg-2)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-phyloseq
- Architecture
- amd64
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 3.2 MB
- Size expected
- 2.2 MB
- Size actual
- 2.2 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-cran-ade4 (>= 1.7-4)
- r-cran-ape (>= 5.0)
- r-bioc-biobase (>= 2.36.2)
- r-bioc-biocgenerics (>= 0.22.0)
- r-bioc-biomformat (>= 1.0.0)
- r-bioc-biostrings (>= 2.40.0)
- r-cran-cluster (>= 2.0.4)
- r-cran-data.table (>= 1.10.4)
- r-cran-foreach (>= 1.4.3)
- r-cran-ggplot2 (>= 2.1.0)
- r-cran-igraph (>= 1.0.1)
- r-bioc-multtest (>= 2.28.0)
- r-cran-plyr (>= 1.8.3)
- r-cran-reshape2 (>= 1.4.1)
- r-cran-scales (>= 0.4.0)
- r-cran-vegan (>= 2.5)
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
- r-bioc-biocstyle (>= 2.4)
- r-bioc-deseq2 (>= 1.16.1)
- r-bioc-genefilter (>= 1.58)
- r-cran-knitr (>= 1.16)
- r-cran-magrittr (>= 1.5)
- r-bioc-metagenomeseq (>= 1.14)
- r-cran-rmarkdown (>= 1.6)
- r-cran-testthat (>= 1.0.2)
Provides
Virtual packages provided
- None
Description
GNU R handling and analysis of high-throughput microbiome census data
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 0505ec0a…4837bbc9 | match |
| SHA-1 | 175d476a…f87c190c | match |
| SHA-256 | 0c3e3154…8871f645 | match |
| SHA-512 | 3ed5fa00…da763f14 | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/phyloseq usr/lib/R/site-library/phyloseq/CITATION usr/lib/R/site-library/phyloseq/DESCRIPTION usr/lib/R/site-library/phyloseq/INDEX usr/lib/R/site-library/phyloseq/Meta usr/lib/R/site-library/phyloseq/Meta/Rd.rds usr/lib/R/site-library/phyloseq/Meta/data.rds usr/lib/R/site-library/phyloseq/Meta/features.rds usr/lib/R/site-library/phyloseq/Meta/hsearch.rds usr/lib/R/site-library/phyloseq/Meta/links.rds usr/lib/R/site-library/phyloseq/Meta/nsInfo.rds usr/lib/R/site-library/phyloseq/Meta/package.rds usr/lib/R/site-library/phyloseq/Meta/vignette.rds usr/lib/R/site-library/phyloseq/NAMESPACE usr/lib/R/site-library/phyloseq/NEWS usr/lib/R/site-library/phyloseq/R usr/lib/R/site-library/phyloseq/R/phyloseq usr/lib/R/site-library/phyloseq/R/phyloseq.rdb usr/lib/R/site-library/phyloseq/R/phyloseq.rdx usr/lib/R/site-library/phyloseq/data usr/lib/R/site-library/phyloseq/data/GlobalPatterns.RData usr/lib/R/site-library/phyloseq/data/datalist usr/lib/R/site-library/phyloseq/data/enterotype.RData usr/lib/R/site-library/phyloseq/data/esophagus.RData usr/lib/R/site-library/phyloseq/data/soilrep.RData usr/lib/R/site-library/phyloseq/doc usr/lib/R/site-library/phyloseq/doc/Unweighted_UniFrac.RData usr/lib/R/site-library/phyloseq/doc/index.html usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.R usr/lib/R/site-library/phyloseq/doc/phyloseq-FAQ.Rmd usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.R usr/lib/R/site-library/phyloseq/doc/phyloseq-analysis.Rmd usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.R usr/lib/R/site-library/phyloseq/doc/phyloseq-basics.Rmd usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.R usr/lib/R/site-library/phyloseq/doc/phyloseq-mixture-models.Rmd usr/lib/R/site-library/phyloseq/extdata usr/lib/R/site-library/phyloseq/extdata/GP_otu_table_rand_short.txt.gz usr/lib/R/site-library/phyloseq/extdata/GP_tree_rand_short.newick.gz usr/lib/R/site-library/phyloseq/extdata/biom-refseq.fasta usr/lib/R/site-library/phyloseq/extdata/biom-tree.phy usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.list.gz usr/lib/R/site-library/phyloseq/extdata/esophagus.fn.shared.gz usr/lib/R/site-library/phyloseq/extdata/esophagus.good.groups.gz usr/lib/R/site-library/phyloseq/extdata/esophagus.tree.gz usr/lib/R/site-library/phyloseq/extdata/gg13-5-73.tree.gz usr/lib/R/site-library/phyloseq/extdata/gp500-pycogent.py usr/lib/R/site-library/phyloseq/extdata/gp500-uuf.csv usr/lib/R/site-library/phyloseq/extdata/gp500-wuf.csv usr/lib/R/site-library/phyloseq/extdata/gp500-wufu.csv usr/lib/R/site-library/phyloseq/extdata/gp500test.env.txt usr/lib/R/site-library/phyloseq/extdata/gp500test.tree usr/lib/R/site-library/phyloseq/extdata/master_map.txt usr/lib/R/site-library/phyloseq/extdata/min_dense_otu_table.biom usr/lib/R/site-library/phyloseq/extdata/min_sparse_otu_table.biom usr/lib/R/site-library/phyloseq/extdata/mothur_example.cons.taxonomy.gz usr/lib/R/site-library/phyloseq/extdata/phyloseq.png usr/lib/R/site-library/phyloseq/extdata/qiime500-refseq.fasta usr/lib/R/site-library/phyloseq/extdata/rformat_dist_0.03.txt.gz usr/lib/R/site-library/phyloseq/extdata/rich_dense_otu_table.biom usr/lib/R/site-library/phyloseq/extdata/rich_sparse_otu_table.biom usr/lib/R/site-library/phyloseq/extdata/study_1457_split_library_seqs_and_mapping.zip usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.tar.gz usr/lib/R/site-library/phyloseq/extdata/study_816_split_library_seqs_and_mapping.zip usr/lib/R/site-library/phyloseq/extdata/study_gp.txt usr/lib/R/site-library/phyloseq/extdata/usearch.uc usr/lib/R/site-library/phyloseq/help usr/lib/R/site-library/phyloseq/help/AnIndex usr/lib/R/site-library/phyloseq/help/aliases.rds usr/lib/R/site-library/phyloseq/help/paths.rds usr/lib/R/site-library/phyloseq/help/phyloseq.rdb usr/lib/R/site-library/phyloseq/help/phyloseq.rdx usr/lib/R/site-library/phyloseq/html usr/lib/R/site-library/phyloseq/html/00Index.html usr/lib/R/site-library/phyloseq/html/R.css usr/lib/R/site-library/phyloseq/scripts usr/lib/R/site-library/phyloseq/scripts/installer.R usr/share usr/share/doc usr/share/doc/r-bioc-phyloseq usr/share/doc/r-bioc-phyloseq/changelog.Debian.gz usr/share/doc/r-bioc-phyloseq/copyright