r-bioc-variantannotation (1.52.0-3)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- r-bioc-variantannotation
- Architecture
- amd64
- Section
- universe/gnu-r
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 7.1 MB
- Size expected
- 3.6 MB
- Size actual
- 3.6 MB
- Size match
- match
Dependencies
Required package dependencies
- r-api-4.0
- r-api-bioc-3.20
- r-bioc-biocgenerics (>= 0.37.0)
- r-bioc-matrixgenerics
- r-bioc-genomeinfodb (>= 1.15.2)
- r-bioc-genomicranges (>= 1.41.5)
- r-bioc-summarizedexperiment (>= 1.19.5)
- r-bioc-rsamtools (>= 2.19.1)
- r-cran-dbi
- r-bioc-zlibbioc
- r-bioc-biobase
- r-bioc-s4vectors (>= 0.27.12)
- r-bioc-iranges (>= 2.23.9)
- r-bioc-xvector (>= 0.29.2)
- r-bioc-biostrings (>= 2.57.2)
- r-bioc-annotationdbi (>= 1.27.9)
- r-bioc-rtracklayer (>= 1.39.7)
- r-bioc-bsgenome (>= 1.47.3)
- r-bioc-genomicfeatures (>= 1.31.3)
- r-bioc-rhtslib (>= 2.99.0)
- libbz2-1.0
- libc6 (>= 2.38)
- libcurl4t64 (>= 7.18.0)
- liblzma5 (>= 5.1.1alpha+20120614)
- zlib1g (>= 1:1.2.3.4)
Recommends
Recommended package dependencies
- None
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
- None
Description
BioConductor annotation of genetic variants
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | da19c53d…ec34478d | match |
| SHA-1 | 5483a3cb…c204f372 | match |
| SHA-256 | 3892370a…90f347ad | match |
| SHA-512 | c8df1fe1…9130095e | match |
Contents
Files and directories included
. usr usr/lib usr/lib/R usr/lib/R/site-library usr/lib/R/site-library/VariantAnnotation usr/lib/R/site-library/VariantAnnotation/CITATION usr/lib/R/site-library/VariantAnnotation/DESCRIPTION usr/lib/R/site-library/VariantAnnotation/INDEX usr/lib/R/site-library/VariantAnnotation/Meta usr/lib/R/site-library/VariantAnnotation/Meta/Rd.rds usr/lib/R/site-library/VariantAnnotation/Meta/features.rds usr/lib/R/site-library/VariantAnnotation/Meta/hsearch.rds usr/lib/R/site-library/VariantAnnotation/Meta/links.rds usr/lib/R/site-library/VariantAnnotation/Meta/nsInfo.rds usr/lib/R/site-library/VariantAnnotation/Meta/package.rds usr/lib/R/site-library/VariantAnnotation/Meta/vignette.rds usr/lib/R/site-library/VariantAnnotation/NAMESPACE usr/lib/R/site-library/VariantAnnotation/NEWS usr/lib/R/site-library/VariantAnnotation/R usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdb usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdx usr/lib/R/site-library/VariantAnnotation/doc usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.R usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.Rmd usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.html usr/lib/R/site-library/VariantAnnotation/doc/ensemblVEP.R usr/lib/R/site-library/VariantAnnotation/doc/ensemblVEP.Rmd usr/lib/R/site-library/VariantAnnotation/doc/ensemblVEP.html usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.Rmd usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.html usr/lib/R/site-library/VariantAnnotation/doc/index.html usr/lib/R/site-library/VariantAnnotation/extdata usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi usr/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf usr/lib/R/site-library/VariantAnnotation/extdata/gl_chr1.vcf usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz.tbi usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi usr/lib/R/site-library/VariantAnnotation/extdata/structural.vcf usr/lib/R/site-library/VariantAnnotation/help usr/lib/R/site-library/VariantAnnotation/help/AnIndex usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdb usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdx usr/lib/R/site-library/VariantAnnotation/help/aliases.rds usr/lib/R/site-library/VariantAnnotation/help/paths.rds usr/lib/R/site-library/VariantAnnotation/html usr/lib/R/site-library/VariantAnnotation/html/00Index.html usr/lib/R/site-library/VariantAnnotation/html/R.css usr/lib/R/site-library/VariantAnnotation/libs usr/lib/R/site-library/VariantAnnotation/libs/VariantAnnotation.so usr/lib/R/site-library/VariantAnnotation/scripts usr/lib/R/site-library/VariantAnnotation/scripts/test_Rplinkseq.R usr/lib/R/site-library/VariantAnnotation/unitTests usr/lib/R/site-library/VariantAnnotation/unitTests/cases usr/lib/R/site-library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/VarScan_header.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/buffer_realloc.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/ex1-seq1-90.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/expand.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/meta_header.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/mixedStructural.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf usr/lib/R/site-library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_VCF-class.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_VRanges-class.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_expand-methods.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_filterVcf.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_isSNV.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_readVcf-methods.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_scanVcf.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_snpSummary.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_vcfFields.R usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R usr/share usr/share/doc usr/share/doc/r-bioc-variantannotation usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz usr/share/doc/r-bioc-variantannotation/copyright