stacks (2.68+dfsg-2build1)
Details
Core information at a glance
- Distribution
- ubuntu
- Origin
- ubuntu-resolute
- Repository
- https://nl.archive.ubuntu.com/ubuntu
- Codename
- resolute
- Component
- universe
- Source
- stacks
- Architecture
- amd64
- Section
- universe/science
- Priority
- optional
- Maintainer
- Ubuntu Developers <[email protected]>
Size & integrity
Byte sizes and integrity verification
- Installed size
- 4 MB
- Size expected
- 1.1 MB
- Size actual
- 1.1 MB
- Size match
- match
Dependencies
Required package dependencies
- libc6 (>= 2.38)
- libgcc-s1 (>= 3.3.1)
- libgomp1 (>= 6)
- libhts3t64 (>= 1.17)
- libstdc++6 (>= 14)
- zlib1g (>= 1:1.2.6)
- samtools
- libdbi-perl
- bsdextrautils
- python3
Recommends
Recommended package dependencies
Suggested packages
Recommended additional packages
Provides
Virtual packages provided
Description
pipeline for building loci from short-read DNA sequences
Tags
Package classification tags
None
Checksums
Hash values and integrity verification status
| Type | Actual | Match |
|---|---|---|
| MD5 | 8e7e357d…504409f3 | match |
| SHA-1 | 592427fb…a7f2b27c | match |
| SHA-256 | b355d191…fc9e84e4 | match |
| SHA-512 | ed96c239…83adcc82 | match |
Contents
Files and directories included
. usr usr/bin usr/bin/stacks usr/libexec usr/libexec/debian-med usr/libexec/debian-med/bin usr/libexec/stacks usr/libexec/stacks/bin usr/libexec/stacks/bin/clone_filter usr/libexec/stacks/bin/cstacks usr/libexec/stacks/bin/denovo_map.pl usr/libexec/stacks/bin/gstacks usr/libexec/stacks/bin/kmer_filter usr/libexec/stacks/bin/phasedstacks usr/libexec/stacks/bin/populations usr/libexec/stacks/bin/process_radtags usr/libexec/stacks/bin/process_shortreads usr/libexec/stacks/bin/ref_map.pl usr/libexec/stacks/bin/sstacks usr/libexec/stacks/bin/stacks-count-reads-per-sample-per-locus usr/libexec/stacks/bin/stacks-dist-extract usr/libexec/stacks/bin/stacks-gdb usr/libexec/stacks/bin/stacks-hist2d-loci-samples-coverage usr/libexec/stacks/bin/stacks-integrate-alignments usr/libexec/stacks/bin/stacks-private-alleles usr/libexec/stacks/bin/stacks-samtools-tview usr/libexec/stacks/bin/tsv2bam usr/libexec/stacks/bin/ustacks usr/share usr/share/doc usr/share/doc/stacks usr/share/doc/stacks/README.Debian usr/share/doc/stacks/changelog.Debian.gz usr/share/doc/stacks/copyright usr/libexec/debian-med/bin/clone_filter usr/libexec/debian-med/bin/cstacks usr/libexec/debian-med/bin/denovo_map usr/libexec/debian-med/bin/denovo_map.pl usr/libexec/debian-med/bin/gstacks usr/libexec/debian-med/bin/kmer_filter usr/libexec/debian-med/bin/phasedstacks usr/libexec/debian-med/bin/populations usr/libexec/debian-med/bin/process_radtags usr/libexec/debian-med/bin/process_shortreads usr/libexec/debian-med/bin/ref_map usr/libexec/debian-med/bin/ref_map.pl usr/libexec/debian-med/bin/sstacks usr/libexec/debian-med/bin/stacks-count-reads-per-sample-per-locus usr/libexec/debian-med/bin/stacks-dist-extract usr/libexec/debian-med/bin/stacks-gdb usr/libexec/debian-med/bin/stacks-hist2d-loci-samples-coverage usr/libexec/debian-med/bin/stacks-integrate-alignments usr/libexec/debian-med/bin/stacks-private-alleles usr/libexec/debian-med/bin/stacks-samtools-tview usr/libexec/debian-med/bin/tsv2bam usr/libexec/debian-med/bin/ustacks usr/libexec/stacks/bin/denovo_map usr/libexec/stacks/bin/ref_map